Wall clock time and date at job start Mon Mar 30 2020 03:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46811 * 2 1 4 4 C 1.53002 * 109.46905 * 119.99816 * 2 1 3 5 5 C 1.50707 * 109.46540 * 188.53448 * 4 2 1 6 6 H 1.07996 * 120.00296 * 5.96406 * 5 4 2 7 7 C 1.37880 * 119.99588 * 185.96783 * 5 4 2 8 8 N 1.31518 * 119.99937 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99908 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47055 * 89.99751 * 9 7 5 11 11 H 1.48503 * 109.47241 * 210.00017 * 9 7 5 12 12 H 1.48498 * 109.47098 * 329.99766 * 9 7 5 13 13 N 1.46904 * 109.46916 * 239.99772 * 2 1 3 14 14 C 1.46847 * 110.99837 * 289.77932 * 13 2 1 15 15 C 1.53042 * 109.51981 * 174.16524 * 14 13 2 16 16 C 1.53119 * 109.27962 * 59.17967 * 15 14 13 17 17 H 1.08995 * 109.52655 * 62.25020 * 16 15 14 18 18 O 1.42900 * 109.52073 * 182.44196 * 16 15 14 19 19 C 1.53120 * 109.15702 * 302.34334 * 16 15 14 20 20 C 1.46843 * 110.99620 * 165.56952 * 13 2 1 21 21 H 1.09004 * 109.46538 * 65.82546 * 20 13 2 22 22 C 1.53000 * 109.46414 * 305.85574 * 20 13 2 23 23 H 1.09007 * 109.46888 * 185.97365 * 1 2 3 24 24 H 1.08996 * 109.46845 * 305.97375 * 1 2 3 25 25 H 1.08997 * 109.46917 * 65.97930 * 1 2 3 26 26 H 1.09004 * 109.47152 * 308.53027 * 4 2 1 27 27 H 1.08999 * 109.47515 * 68.53470 * 4 2 1 28 28 H 0.96998 * 119.99553 * 179.97438 * 8 7 5 29 29 H 1.09011 * 109.45999 * 294.17610 * 14 13 2 30 30 H 1.08989 * 109.46723 * 54.15554 * 14 13 2 31 31 H 1.09002 * 109.49630 * 179.11633 * 15 14 13 32 32 H 1.08991 * 109.50200 * 299.19743 * 15 14 13 33 33 H 0.96701 * 113.99637 * 299.99589 * 18 16 15 34 34 H 1.08999 * 109.50564 * 297.71431 * 19 16 15 35 35 H 1.09006 * 109.50186 * 177.59973 * 19 16 15 36 36 H 1.08997 * 109.47499 * 66.95005 * 22 20 13 37 37 H 1.09003 * 109.46937 * 186.95298 * 22 20 13 38 38 H 1.08998 * 109.46773 * 306.95038 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5322 -0.5412 1.3592 6 1 4.0501 0.1085 0.6692 7 6 4.2363 -1.2060 2.3407 8 7 3.6056 -1.9968 3.1812 9 14 6.0860 -0.9835 2.4765 10 1 6.3824 0.1551 3.3827 11 1 6.6949 -2.2227 3.0231 12 1 6.6513 -0.7058 1.1317 13 7 2.0197 -0.6926 -1.1995 14 6 1.7577 -2.1352 -1.1179 15 6 2.1469 -2.8011 -2.4398 16 6 3.6316 -2.5478 -2.7155 17 1 4.2313 -3.0019 -1.9267 18 8 3.9873 -3.1189 -3.9762 19 6 3.8864 -1.0383 -2.7473 20 6 3.4468 -0.4235 -1.4167 21 1 4.0269 -0.8622 -0.6047 22 6 3.6811 1.0881 -1.4514 23 1 -0.3633 -1.0222 0.1070 24 1 -0.3633 0.6037 0.8317 25 1 -0.3633 0.4183 -0.9387 26 1 1.5575 -0.3029 2.1327 27 1 1.8066 -1.7834 1.1764 28 1 4.1011 -2.4648 3.8714 29 1 2.3457 -2.5658 -0.3073 30 1 0.6978 -2.3016 -0.9259 31 1 1.9670 -3.8741 -2.3734 32 1 1.5492 -2.3812 -3.2486 33 1 3.8467 -4.0742 -4.0289 34 1 3.3165 -0.5901 -3.5612 35 1 4.9494 -0.8519 -2.9009 36 1 3.4862 1.5088 -0.4649 37 1 4.7143 1.2892 -1.7345 38 1 3.0097 1.5431 -2.1795 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705273518.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:23 Heat of formation + Delta-G solvation = -54.617345 kcal Electronic energy + Delta-G solvation = -17417.516177 eV Core-core repulsion = 14873.578584 eV Total energy + Delta-G solvation = -2543.937592 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.31281 -36.65757 -33.51995 -32.41069 -31.77604 -28.82869 -27.47973 -26.48291 -23.48151 -22.85305 -21.12401 -19.79587 -18.35313 -16.90873 -16.31142 -15.58068 -14.93092 -14.31984 -14.12500 -13.86582 -13.23353 -13.03231 -12.80207 -11.99228 -11.84715 -11.62564 -11.52670 -11.47405 -11.30654 -11.12385 -11.01589 -10.57736 -10.48648 -10.36343 -10.10752 -9.89774 -9.74540 -9.44757 -9.33870 -8.93463 -8.40679 -7.15309 -6.06807 -4.06213 3.25721 3.33346 3.35385 4.39081 4.48314 4.73846 5.23713 5.26610 5.28781 5.59710 5.68167 5.90769 5.93818 6.04076 6.07968 6.18762 6.21892 6.22549 6.37566 6.41312 6.43973 6.48595 6.56548 6.69742 6.78462 6.78813 6.88904 6.97752 7.23639 7.54538 7.63593 7.87569 7.89207 8.06948 8.13882 8.35326 8.98140 9.54782 11.04076 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021084 B = 0.011525 C = 0.009518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.710326 B = 2428.993955 C = 2940.994617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.072 3.928 3 H 0.074 0.926 4 C -0.008 4.008 5 C -0.526 4.526 6 H 0.073 0.927 7 C 0.059 3.941 8 N -0.891 5.891 9 Si 0.881 3.119 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.521 5.521 14 C 0.053 3.947 15 C -0.143 4.143 16 C 0.102 3.898 17 H 0.054 0.946 18 O -0.574 6.574 19 C -0.100 4.100 20 C 0.059 3.941 21 H 0.099 0.901 22 C -0.142 4.142 23 H 0.045 0.955 24 H 0.049 0.951 25 H 0.047 0.953 26 H 0.012 0.988 27 H 0.028 0.972 28 H 0.260 0.740 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.371 0.629 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.047 0.953 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.901 -0.139 -9.242 9.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.035 4.035 3 H 0.092 0.908 4 C -0.046 4.046 5 C -0.563 4.563 6 H 0.091 0.909 7 C -0.142 4.142 8 N -0.530 5.530 9 Si 0.709 3.291 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.196 1.196 13 N -0.246 5.246 14 C -0.075 4.075 15 C -0.181 4.181 16 C 0.044 3.956 17 H 0.072 0.928 18 O -0.379 6.379 19 C -0.138 4.138 20 C -0.049 4.049 21 H 0.117 0.883 22 C -0.199 4.199 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.030 0.970 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.217 0.783 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.979 0.563 -9.624 9.841 hybrid contribution 1.280 -0.937 1.122 1.943 sum -0.699 -0.374 -8.502 8.539 Atomic orbital electron populations 1.21813 0.96695 1.00804 1.00216 1.21863 0.93036 0.98566 0.90075 0.90757 1.19789 0.95976 0.96559 0.92315 1.21561 0.92995 1.27187 1.14601 0.90901 1.25015 0.98024 0.95412 0.95766 1.69969 1.35615 1.29381 1.18078 0.86758 0.86162 0.77645 0.78549 1.20626 1.21298 1.19635 1.62363 1.16049 1.08412 1.37727 1.21972 1.00683 0.89303 0.95554 1.22269 0.96864 0.99575 0.99382 1.21929 0.94229 0.94975 0.84503 0.92802 1.86491 1.89041 1.26087 1.36262 1.21597 1.00693 0.92545 0.98949 1.22076 0.90457 0.95777 0.96541 0.88319 1.21864 1.00137 0.95731 1.02182 0.93565 0.93225 0.93398 0.96951 0.95414 0.93071 0.92534 0.91533 0.92387 0.91248 0.78323 0.91627 0.91998 0.91319 0.93349 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.08 37.16 0.34 -2.07 16 2 C 0.07 1.46 2.34 -67.71 -0.16 1.30 16 3 H 0.07 1.52 5.58 -51.93 -0.29 1.23 16 4 C -0.01 -0.20 4.03 -27.88 -0.11 -0.32 16 5 C -0.53 -13.66 6.91 -34.44 -0.24 -13.90 16 6 H 0.07 1.81 3.82 -52.49 -0.20 1.61 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 9 Si 0.88 20.95 29.54 -169.99 -5.02 15.92 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.52 -9.88 4.41 -218.75 -0.96 -10.84 16 14 C 0.05 0.98 4.44 -3.83 -0.02 0.96 16 15 C -0.14 -2.24 5.72 -26.65 -0.15 -2.39 16 16 C 0.10 1.67 3.54 -26.61 -0.09 1.58 16 17 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 18 O -0.57 -8.60 13.33 -35.23 -0.47 -9.07 16 19 C -0.10 -1.72 5.02 -26.65 -0.13 -1.86 16 20 C 0.06 1.13 1.76 -67.73 -0.12 1.01 16 21 H 0.10 2.21 4.78 -51.93 -0.25 1.97 16 22 C -0.14 -2.48 7.95 37.16 0.30 -2.18 16 23 H 0.05 0.80 6.84 -51.93 -0.36 0.45 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.01 0.32 8.13 -51.93 -0.42 -0.10 16 27 H 0.03 0.72 5.92 -51.93 -0.31 0.42 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.06 1.23 6.39 -51.92 -0.33 0.89 16 30 H 0.07 1.18 6.53 -51.94 -0.34 0.84 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.37 3.89 9.08 45.56 0.41 4.31 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.28 5.32 -51.93 -0.28 1.01 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 282.10 15.07 4.25 4.25 Total: -1.00 -28.65 282.10 -7.25 -35.90 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -5.30 Total: 5.27 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -0.49 Total: -16.34 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: -0.23 Total: -35.93 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -0.47 Total: -9.07 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.65 -7.25 -35.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705273518.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.712 kcal (2) G-P(sol) polarization free energy of solvation -28.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds