Wall clock time and date at job start Mon Mar 30 2020 03:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46811 * 2 1 4 4 C 1.53002 * 109.46905 * 119.99816 * 2 1 3 5 5 C 1.50707 * 109.46540 * 188.53448 * 4 2 1 6 6 H 1.07996 * 120.00296 * 5.96406 * 5 4 2 7 7 C 1.37880 * 119.99588 * 185.96783 * 5 4 2 8 8 N 1.31518 * 119.99937 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99908 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47055 * 89.99751 * 9 7 5 11 11 H 1.48503 * 109.47241 * 210.00017 * 9 7 5 12 12 H 1.48498 * 109.47098 * 329.99766 * 9 7 5 13 13 N 1.46904 * 109.46916 * 239.99772 * 2 1 3 14 14 C 1.46847 * 110.99837 * 289.77932 * 13 2 1 15 15 C 1.53042 * 109.51981 * 174.16524 * 14 13 2 16 16 C 1.53119 * 109.27962 * 59.17967 * 15 14 13 17 17 H 1.08995 * 109.52655 * 62.25020 * 16 15 14 18 18 O 1.42900 * 109.52073 * 182.44196 * 16 15 14 19 19 C 1.53120 * 109.15702 * 302.34334 * 16 15 14 20 20 C 1.46843 * 110.99620 * 165.56952 * 13 2 1 21 21 H 1.09004 * 109.46538 * 65.82546 * 20 13 2 22 22 C 1.53000 * 109.46414 * 305.85574 * 20 13 2 23 23 H 1.09007 * 109.46888 * 185.97365 * 1 2 3 24 24 H 1.08996 * 109.46845 * 305.97375 * 1 2 3 25 25 H 1.08997 * 109.46917 * 65.97930 * 1 2 3 26 26 H 1.09004 * 109.47152 * 308.53027 * 4 2 1 27 27 H 1.08999 * 109.47515 * 68.53470 * 4 2 1 28 28 H 0.96998 * 119.99553 * 179.97438 * 8 7 5 29 29 H 1.09011 * 109.45999 * 294.17610 * 14 13 2 30 30 H 1.08989 * 109.46723 * 54.15554 * 14 13 2 31 31 H 1.09002 * 109.49630 * 179.11633 * 15 14 13 32 32 H 1.08991 * 109.50200 * 299.19743 * 15 14 13 33 33 H 0.96701 * 113.99637 * 299.99589 * 18 16 15 34 34 H 1.08999 * 109.50564 * 297.71431 * 19 16 15 35 35 H 1.09006 * 109.50186 * 177.59973 * 19 16 15 36 36 H 1.08997 * 109.47499 * 66.95005 * 22 20 13 37 37 H 1.09003 * 109.46937 * 186.95298 * 22 20 13 38 38 H 1.08998 * 109.46773 * 306.95038 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5322 -0.5412 1.3592 6 1 4.0501 0.1085 0.6692 7 6 4.2363 -1.2060 2.3407 8 7 3.6056 -1.9968 3.1812 9 14 6.0860 -0.9835 2.4765 10 1 6.3824 0.1551 3.3827 11 1 6.6949 -2.2227 3.0231 12 1 6.6513 -0.7058 1.1317 13 7 2.0197 -0.6926 -1.1995 14 6 1.7577 -2.1352 -1.1179 15 6 2.1469 -2.8011 -2.4398 16 6 3.6316 -2.5478 -2.7155 17 1 4.2313 -3.0019 -1.9267 18 8 3.9873 -3.1189 -3.9762 19 6 3.8864 -1.0383 -2.7473 20 6 3.4468 -0.4235 -1.4167 21 1 4.0269 -0.8622 -0.6047 22 6 3.6811 1.0881 -1.4514 23 1 -0.3633 -1.0222 0.1070 24 1 -0.3633 0.6037 0.8317 25 1 -0.3633 0.4183 -0.9387 26 1 1.5575 -0.3029 2.1327 27 1 1.8066 -1.7834 1.1764 28 1 4.1011 -2.4648 3.8714 29 1 2.3457 -2.5658 -0.3073 30 1 0.6978 -2.3016 -0.9259 31 1 1.9670 -3.8741 -2.3734 32 1 1.5492 -2.3812 -3.2486 33 1 3.8467 -4.0742 -4.0289 34 1 3.3165 -0.5901 -3.5612 35 1 4.9494 -0.8519 -2.9009 36 1 3.4862 1.5088 -0.4649 37 1 4.7143 1.2892 -1.7345 38 1 3.0097 1.5431 -2.1795 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705273518.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:22 Heat of formation + Delta-G solvation = -75.159998 kcal Electronic energy + Delta-G solvation = -17418.406973 eV Core-core repulsion = 14873.578584 eV Total energy + Delta-G solvation = -2544.828389 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.81204 -38.00380 -35.20578 -34.20180 -33.23797 -30.32716 -29.35644 -27.87768 -25.17029 -24.56294 -22.56043 -21.28307 -19.96283 -18.54739 -17.92174 -17.08200 -16.68758 -16.00501 -15.60246 -15.30633 -14.68733 -14.59996 -14.38763 -13.79015 -13.40790 -13.31266 -13.00214 -12.89863 -12.81606 -12.66423 -12.52449 -12.36747 -12.13449 -12.03078 -11.57801 -11.50305 -11.36310 -11.05754 -10.84708 -10.66233 -10.49770 -8.82287 -8.16900 -6.20485 1.35916 1.37673 1.46389 2.39417 3.10899 3.22139 3.36256 3.89747 3.92676 4.22541 4.24217 4.43820 4.55369 4.60828 4.65454 4.76178 4.78647 4.80821 4.95474 5.01144 5.03990 5.06095 5.12749 5.21750 5.26016 5.31262 5.36855 5.38476 5.56036 5.67022 5.70875 5.86526 6.27020 6.47936 6.50942 6.89184 6.92365 7.43497 8.94807 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021084 B = 0.011525 C = 0.009518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.710326 B = 2428.993955 C = 2940.994617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.077 3.923 3 H 0.075 0.925 4 C -0.001 4.001 5 C -0.523 4.523 6 H 0.084 0.916 7 C 0.003 3.997 8 N -0.933 5.933 9 Si 0.941 3.059 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.260 1.260 13 N -0.510 5.510 14 C 0.056 3.944 15 C -0.132 4.132 16 C 0.106 3.894 17 H 0.037 0.963 18 O -0.578 6.578 19 C -0.096 4.096 20 C 0.058 3.942 21 H 0.062 0.938 22 C -0.137 4.137 23 H 0.043 0.957 24 H 0.054 0.946 25 H 0.068 0.932 26 H -0.018 1.018 27 H 0.004 0.996 28 H 0.258 0.742 29 H 0.016 0.984 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.391 0.609 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.669 0.360 -11.332 11.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.031 4.031 3 H 0.093 0.907 4 C -0.039 4.039 5 C -0.561 4.561 6 H 0.102 0.898 7 C -0.194 4.194 8 N -0.574 5.574 9 Si 0.767 3.233 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.184 1.184 13 N -0.234 5.234 14 C -0.073 4.073 15 C -0.170 4.170 16 C 0.047 3.953 17 H 0.055 0.945 18 O -0.386 6.386 19 C -0.134 4.134 20 C -0.050 4.050 21 H 0.079 0.921 22 C -0.194 4.194 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.000 1.000 27 H 0.023 0.977 28 H 0.067 0.933 29 H 0.035 0.965 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.241 0.759 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.745 1.059 -11.737 11.913 hybrid contribution 1.182 -1.120 1.743 2.385 sum -0.564 -0.061 -9.995 10.011 Atomic orbital electron populations 1.21738 0.94421 1.01041 1.01603 1.21774 0.94910 0.97948 0.88458 0.90718 1.19706 0.95385 0.95466 0.93365 1.21973 0.93920 1.26213 1.13957 0.89785 1.25805 1.02324 0.95484 0.95785 1.70105 1.37236 1.30961 1.19115 0.85793 0.81186 0.77375 0.78946 1.20197 1.21527 1.18351 1.62484 1.16068 1.08607 1.36261 1.21951 1.00372 0.88926 0.96017 1.22191 0.96460 1.00727 0.97623 1.21749 0.94313 0.94518 0.84728 0.94483 1.86445 1.88986 1.28108 1.35013 1.21519 1.01002 0.93129 0.97705 1.22004 0.89745 0.96837 0.96446 0.92064 1.21813 1.01516 0.94417 1.01695 0.93782 0.92691 0.91264 0.99959 0.97748 0.93322 0.96532 0.90938 0.90198 0.90324 0.75924 0.90884 0.91579 0.92978 0.91906 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 9.08 71.98 0.65 -3.74 16 2 C 0.08 3.08 2.34 44.92 0.11 3.19 16 3 H 0.07 2.99 5.58 -2.39 -0.01 2.97 16 4 C 0.00 -0.05 4.03 29.85 0.12 0.07 16 5 C -0.52 -27.71 6.91 25.60 0.18 -27.53 16 6 H 0.08 4.20 3.82 -2.91 -0.01 4.19 16 7 C 0.00 0.19 5.46 84.65 0.46 0.65 16 8 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 9 Si 0.94 43.50 29.54 68.60 2.03 45.53 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 12 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 13 N -0.51 -18.79 4.41 -846.01 -3.73 -22.52 16 14 C 0.06 2.03 4.44 86.33 0.38 2.41 16 15 C -0.13 -3.86 5.72 30.65 0.18 -3.69 16 16 C 0.11 3.27 3.54 30.67 0.11 3.38 16 17 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 18 O -0.58 -15.63 13.33 -148.98 -1.99 -17.62 16 19 C -0.10 -3.10 5.02 30.65 0.15 -2.94 16 20 C 0.06 2.14 1.76 44.94 0.08 2.22 16 21 H 0.06 2.75 4.78 -2.39 -0.01 2.74 16 22 C -0.14 -4.53 7.95 71.98 0.57 -3.96 16 23 H 0.04 1.48 6.84 -2.38 -0.02 1.47 16 24 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 26 H -0.02 -1.00 8.13 -2.39 -0.02 -1.02 16 27 H 0.00 0.23 5.92 -2.39 -0.01 0.22 16 28 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 29 H 0.02 0.73 6.39 -2.38 -0.02 0.72 16 30 H 0.07 2.52 6.53 -2.39 -0.02 2.50 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.39 6.99 9.08 -74.06 -0.67 6.32 16 34 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.05 1.88 5.32 -2.39 -0.01 1.87 16 37 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -61.90 282.10 -0.04 -61.94 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.37 Total: 18.15 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 2.99 Total: -29.94 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -3.44 Total: -78.06 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -1.99 Total: -17.62 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -61.90 -0.04 -61.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705273518.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.217 kcal (2) G-P(sol) polarization free energy of solvation -61.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds