Wall clock time and date at job start Mon Mar 30 2020 04:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99785 * 2 1 4 4 C 1.53780 * 113.61431 * 149.99943 * 3 2 1 5 5 C 1.53788 * 87.07917 * 89.20286 * 4 3 2 6 6 C 1.53000 * 113.61337 * 139.98014 * 5 4 3 7 7 N 1.46893 * 109.47101 * 174.99681 * 6 5 4 8 8 C 1.46904 * 111.00244 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47164 * 35.00209 * 8 7 6 10 10 C 1.53004 * 109.47219 * 275.00615 * 8 7 6 11 11 C 1.53002 * 109.47145 * 155.00252 * 8 7 6 12 12 C 1.50696 * 109.46919 * 295.00022 * 11 8 7 13 13 H 1.07999 * 120.00202 * 359.97438 * 12 11 8 14 14 C 1.37884 * 119.99746 * 180.02562 * 12 11 8 15 15 N 1.31514 * 119.99573 * 0.27650 * 14 12 11 16 16 Si 1.86800 * 119.99781 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46758 * 89.99934 * 16 14 12 18 18 H 1.48499 * 109.47026 * 209.99782 * 16 14 12 19 19 H 1.48496 * 109.47474 * 329.99818 * 16 14 12 20 20 C 1.53775 * 87.07879 * 25.43438 * 5 4 3 21 21 H 1.08999 * 109.47533 * 60.00137 * 1 2 3 22 22 H 1.09008 * 109.46539 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47353 * 299.99344 * 1 2 3 24 24 H 1.09004 * 112.84928 * 18.80448 * 3 2 1 25 25 H 1.09000 * 113.61604 * 334.65416 * 4 3 2 26 26 H 1.09003 * 113.61352 * 203.74736 * 4 3 2 27 27 H 1.08994 * 113.61376 * 270.79509 * 5 4 3 28 28 H 1.09010 * 109.47032 * 54.99827 * 6 5 4 29 29 H 1.08997 * 109.47677 * 295.00394 * 6 5 4 30 30 H 1.00898 * 111.00298 * 56.05055 * 7 6 5 31 31 H 1.09001 * 109.47356 * 59.99403 * 10 8 7 32 32 H 1.09000 * 109.47210 * 180.02562 * 10 8 7 33 33 H 1.09002 * 109.46722 * 299.99865 * 10 8 7 34 34 H 1.09000 * 109.46497 * 175.00287 * 11 8 7 35 35 H 1.08999 * 109.46623 * 55.00351 * 11 8 7 36 36 H 0.97001 * 120.00651 * 359.71956 * 15 14 12 37 37 H 1.08997 * 113.61592 * 89.12164 * 20 5 4 38 38 H 1.09006 * 113.61216 * 220.01674 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.3754 1.3720 0.7045 5 6 4.0062 1.0354 -0.6571 6 6 5.2904 1.8149 -0.9471 7 7 5.8776 1.3398 -2.2069 8 6 7.1155 2.0671 -2.5181 9 1 7.6449 2.2956 -1.5931 10 6 6.7731 3.3692 -3.2448 11 6 8.0041 1.2015 -3.4137 12 6 8.4419 -0.0237 -2.6534 13 1 8.1190 -0.1702 -1.6332 14 6 9.2555 -0.9572 -3.2598 15 7 9.6539 -0.7755 -4.4999 16 14 9.7987 -2.4757 -2.3171 17 1 8.8123 -3.5662 -2.5244 18 1 11.1304 -2.9128 -2.8077 19 1 9.8853 -2.1551 -0.8697 20 6 2.7530 1.6512 -1.3013 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 1.3136 2.0789 0.3238 25 1 3.5175 0.5949 1.4556 26 1 3.6303 2.3669 1.0698 27 1 4.1107 -0.0344 -0.8373 28 1 6.0004 1.6608 -0.1344 29 1 5.0597 2.8768 -1.0314 30 1 5.2152 1.4123 -2.9646 31 1 6.1400 3.9858 -2.6068 32 1 7.6917 3.9086 -3.4761 33 1 6.2437 3.1406 -4.1698 34 1 8.8810 1.7735 -3.7170 35 1 7.4436 0.8993 -4.2983 36 1 9.3721 0.0131 -4.9893 37 1 2.8377 2.7224 -1.4844 38 1 2.3926 1.0996 -2.1696 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705533686.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:07 Heat of formation + Delta-G solvation = -40.265519 kcal Electronic energy + Delta-G solvation = -15937.978938 eV Core-core repulsion = 13394.663687 eV Total energy + Delta-G solvation = -2543.315251 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.66032 -36.98707 -35.65896 -32.83594 -30.45768 -27.04714 -26.85852 -25.94348 -25.46085 -22.84903 -21.87491 -19.98964 -19.29208 -16.76287 -16.42764 -15.64163 -15.33169 -15.20969 -14.35482 -13.87777 -13.61408 -13.50181 -12.95232 -12.80474 -12.57425 -12.45007 -11.79819 -11.74921 -11.42543 -11.27359 -10.99839 -10.71453 -10.60655 -10.47399 -10.17307 -9.98820 -9.94761 -9.60789 -9.40657 -8.37871 -8.13537 -7.51295 -6.14153 -3.78404 3.54449 3.56559 3.60439 3.75989 4.50470 4.64657 4.71869 4.76091 4.87922 5.03415 5.17868 5.22638 5.37321 5.47103 5.62633 5.64344 5.67794 5.68824 5.81701 5.83394 5.92793 5.99602 6.01699 6.18847 6.30630 6.41126 6.57912 6.63398 6.95307 7.12170 7.39382 7.52330 7.97027 8.15791 8.49456 8.74483 9.12454 9.90081 11.26520 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026528 B = 0.005752 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.224388 B = 4866.660660 C = 5552.869895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.062 3.938 4 C -0.137 4.137 5 C -0.096 4.096 6 C 0.070 3.930 7 N -0.662 5.662 8 C 0.095 3.905 9 H 0.064 0.936 10 C -0.180 4.180 11 C 0.020 3.980 12 C -0.567 4.567 13 H 0.052 0.948 14 C 0.006 3.994 15 N -0.926 5.926 16 Si 1.071 2.929 17 H -0.290 1.290 18 H -0.288 1.288 19 H -0.291 1.291 20 C -0.158 4.158 21 H 0.040 0.960 22 H 0.085 0.915 23 H 0.039 0.961 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.068 0.932 29 H 0.017 0.983 30 H 0.329 0.671 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.006 0.994 35 H 0.007 0.993 36 H 0.265 0.735 37 H 0.083 0.917 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.571 6.839 8.774 19.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C 0.004 3.996 4 C -0.175 4.175 5 C -0.115 4.115 6 C -0.060 4.060 7 N -0.291 5.291 8 C -0.014 4.014 9 H 0.082 0.918 10 C -0.239 4.239 11 C -0.018 4.018 12 C -0.606 4.606 13 H 0.070 0.930 14 C -0.195 4.195 15 N -0.564 5.564 16 Si 0.901 3.099 17 H -0.217 1.217 18 H -0.214 1.214 19 H -0.217 1.217 20 C -0.196 4.196 21 H 0.059 0.941 22 H 0.104 0.896 23 H 0.058 0.942 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.107 0.893 27 H 0.122 0.878 28 H 0.086 0.914 29 H 0.035 0.965 30 H 0.147 0.853 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.024 0.976 35 H 0.025 0.975 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.223 4.746 8.970 18.295 hybrid contribution -1.563 2.568 -0.218 3.014 sum -16.785 7.314 8.752 20.294 Atomic orbital electron populations 1.22790 0.81264 1.02703 0.99745 1.87923 1.19372 1.26651 1.94579 1.23067 0.94298 0.84785 0.97424 1.23228 0.94179 1.02269 0.97795 1.22512 0.92715 1.01549 0.94704 1.21940 0.95045 0.94743 0.94229 1.60476 1.06330 1.58535 1.03796 1.21627 0.90952 0.90199 0.98635 0.91779 1.22575 1.01138 0.99778 1.00454 1.19234 0.92876 0.95000 0.94656 1.21970 1.31530 1.06329 1.00786 0.92986 1.25771 0.94878 1.02017 0.96865 1.70754 1.45119 1.30216 1.10306 0.83514 0.76310 0.75454 0.74661 1.21700 1.21430 1.21714 1.23550 0.97479 1.00812 0.97740 0.94115 0.89632 0.94197 0.91375 0.90581 0.89287 0.87782 0.91384 0.96538 0.85342 0.94284 0.92618 0.93149 0.97587 0.97526 0.92454 0.89818 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.85 101.05 1.10 1.38 16 2 O -0.37 -4.65 10.64 -35.23 -0.37 -5.03 16 3 C 0.06 0.70 4.37 -25.92 -0.11 0.59 16 4 C -0.14 -1.61 7.47 -25.92 -0.19 -1.80 16 5 C -0.10 -1.37 3.84 -89.81 -0.34 -1.71 16 6 C 0.07 1.12 5.32 -3.83 -0.02 1.10 16 7 N -0.66 -12.91 5.96 -106.72 -0.64 -13.55 16 8 C 0.10 2.01 2.53 -67.71 -0.17 1.83 16 9 H 0.06 1.39 7.80 -51.93 -0.40 0.99 16 10 C -0.18 -3.12 9.16 37.16 0.34 -2.78 16 11 C 0.02 0.52 3.96 -27.88 -0.11 0.40 16 12 C -0.57 -16.70 8.84 -34.44 -0.30 -17.01 16 13 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.01 0.19 5.46 -17.82 -0.10 0.09 16 15 N -0.93 -29.46 13.65 55.43 0.76 -28.70 16 16 Si 1.07 26.80 29.90 -169.99 -5.08 21.72 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 C -0.16 -1.91 7.46 -25.92 -0.19 -2.10 16 21 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 22 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 23 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.07 0.63 7.87 -51.93 -0.41 0.22 16 25 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.09 0.91 8.10 -51.93 -0.42 0.48 16 27 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 28 H 0.07 1.15 8.06 -51.92 -0.42 0.74 16 29 H 0.02 0.24 7.14 -51.93 -0.37 -0.13 16 30 H 0.33 6.05 8.47 -39.29 -0.33 5.72 16 31 H 0.04 0.59 7.45 -51.93 -0.39 0.20 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 34 H 0.01 0.17 8.00 -51.93 -0.42 -0.25 16 35 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 36 H 0.27 8.40 7.22 -40.82 -0.29 8.10 16 37 H 0.08 0.91 7.90 -51.93 -0.41 0.50 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 309.63 15.07 4.67 4.67 Total: -1.00 -32.43 309.63 -7.65 -40.08 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.86 Total: 0.82 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -0.11 Total: -20.01 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.12 Total: -42.25 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.37 Total: -5.03 kcal Atomic # 14 Polarization: 26.80 SS G_CDS: -5.08 Total: 21.72 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.43 -7.65 -40.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705533686.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.187 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds