Wall clock time and date at job start Mon Mar 30 2020 04:15:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42896 * 1
3 3 C 1.42902 * 113.99785 * 2 1
4 4 C 1.53780 * 113.61431 * 149.99943 * 3 2 1
5 5 C 1.53788 * 87.07917 * 89.20286 * 4 3 2
6 6 C 1.53000 * 113.61337 * 139.98014 * 5 4 3
7 7 N 1.46893 * 109.47101 * 174.99681 * 6 5 4
8 8 C 1.46904 * 111.00244 * 180.02562 * 7 6 5
9 9 H 1.09002 * 109.47164 * 35.00209 * 8 7 6
10 10 C 1.53004 * 109.47219 * 275.00615 * 8 7 6
11 11 C 1.53002 * 109.47145 * 155.00252 * 8 7 6
12 12 C 1.50696 * 109.46919 * 295.00022 * 11 8 7
13 13 H 1.07999 * 120.00202 * 359.97438 * 12 11 8
14 14 C 1.37884 * 119.99746 * 180.02562 * 12 11 8
15 15 N 1.31514 * 119.99573 * 0.27650 * 14 12 11
16 16 Si 1.86800 * 119.99781 * 179.97438 * 14 12 11
17 17 H 1.48501 * 109.46758 * 89.99934 * 16 14 12
18 18 H 1.48499 * 109.47026 * 209.99782 * 16 14 12
19 19 H 1.48496 * 109.47474 * 329.99818 * 16 14 12
20 20 C 1.53775 * 87.07879 * 25.43438 * 5 4 3
21 21 H 1.08999 * 109.47533 * 60.00137 * 1 2 3
22 22 H 1.09008 * 109.46539 * 179.97438 * 1 2 3
23 23 H 1.08999 * 109.47353 * 299.99344 * 1 2 3
24 24 H 1.09004 * 112.84928 * 18.80448 * 3 2 1
25 25 H 1.09000 * 113.61604 * 334.65416 * 4 3 2
26 26 H 1.09003 * 113.61352 * 203.74736 * 4 3 2
27 27 H 1.08994 * 113.61376 * 270.79509 * 5 4 3
28 28 H 1.09010 * 109.47032 * 54.99827 * 6 5 4
29 29 H 1.08997 * 109.47677 * 295.00394 * 6 5 4
30 30 H 1.00898 * 111.00298 * 56.05055 * 7 6 5
31 31 H 1.09001 * 109.47356 * 59.99403 * 10 8 7
32 32 H 1.09000 * 109.47210 * 180.02562 * 10 8 7
33 33 H 1.09002 * 109.46722 * 299.99865 * 10 8 7
34 34 H 1.09000 * 109.46497 * 175.00287 * 11 8 7
35 35 H 1.08999 * 109.46623 * 55.00351 * 11 8 7
36 36 H 0.97001 * 120.00651 * 359.71956 * 15 14 12
37 37 H 1.08997 * 113.61592 * 89.12164 * 20 5 4
38 38 H 1.09006 * 113.61216 * 220.01674 * 20 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0101 1.3055 0.0000
4 6 3.3754 1.3720 0.7045
5 6 4.0062 1.0354 -0.6571
6 6 5.2904 1.8149 -0.9471
7 7 5.8776 1.3398 -2.2069
8 6 7.1155 2.0671 -2.5181
9 1 7.6449 2.2956 -1.5931
10 6 6.7731 3.3692 -3.2448
11 6 8.0041 1.2015 -3.4137
12 6 8.4419 -0.0237 -2.6534
13 1 8.1190 -0.1702 -1.6332
14 6 9.2555 -0.9572 -3.2598
15 7 9.6539 -0.7755 -4.4999
16 14 9.7987 -2.4757 -2.3171
17 1 8.8123 -3.5662 -2.5244
18 1 11.1304 -2.9128 -2.8077
19 1 9.8853 -2.1551 -0.8697
20 6 2.7530 1.6512 -1.3013
21 1 -0.3634 0.5138 -0.8900
22 1 -0.3633 -1.0278 -0.0005
23 1 -0.3634 0.5137 0.8900
24 1 1.3136 2.0789 0.3238
25 1 3.5175 0.5949 1.4556
26 1 3.6303 2.3669 1.0698
27 1 4.1107 -0.0344 -0.8373
28 1 6.0004 1.6608 -0.1344
29 1 5.0597 2.8768 -1.0314
30 1 5.2152 1.4123 -2.9646
31 1 6.1400 3.9858 -2.6068
32 1 7.6917 3.9086 -3.4761
33 1 6.2437 3.1406 -4.1698
34 1 8.8810 1.7735 -3.7170
35 1 7.4436 0.8993 -4.2983
36 1 9.3721 0.0131 -4.9893
37 1 2.8377 2.7224 -1.4844
38 1 2.3926 1.0996 -2.1696
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000705533686.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:15:07
Heat of formation + Delta-G solvation = -62.253863 kcal
Electronic energy + Delta-G solvation = -15938.932424 eV
Core-core repulsion = 13394.663687 eV
Total energy + Delta-G solvation = -2544.268737 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-40.62664 -38.39498 -36.84043 -34.97197 -32.02208 -28.81904 -27.92979 -26.97563
-26.45854 -24.97025 -23.05713 -21.67666 -20.33289 -18.87929 -17.45018 -16.62439
-16.57860 -16.17500 -15.76604 -15.65807 -15.27188 -14.95926 -14.37494 -14.15045
-13.91401 -13.33018 -13.30591 -13.03002 -12.99385 -12.64673 -12.53397 -12.41502
-12.20742 -11.92071 -11.72527 -11.51827 -11.27913 -10.88799 -10.59544 -10.46546
-10.42687 -9.02611 -8.56547 -6.21375 1.52863 1.62749 1.80273 2.62074
2.77421 3.21728 3.35095 3.68945 3.74681 3.89458 4.03989 4.14006
4.33138 4.37063 4.45840 4.52674 4.56278 4.57828 4.76067 4.79064
4.83712 4.83735 4.89058 4.90710 5.09539 5.12325 5.14228 5.25530
5.30738 5.44771 5.52870 6.14348 6.33006 6.34522 6.41390 6.67860
6.76612 7.55666 8.84638
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.026528 B = 0.005752 C = 0.005041
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1055.224388 B = 4866.660660 C = 5552.869895
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.399 6.399
3 C 0.066 3.934
4 C -0.129 4.129
5 C -0.105 4.105
6 C 0.077 3.923
7 N -0.685 5.685
8 C 0.103 3.897
9 H 0.055 0.945
10 C -0.168 4.168
11 C 0.021 3.979
12 C -0.576 4.576
13 H 0.045 0.955
14 C -0.048 4.048
15 N -0.950 5.950
16 Si 1.118 2.882
17 H -0.278 1.278
18 H -0.283 1.283
19 H -0.272 1.272
20 C -0.151 4.151
21 H 0.048 0.952
22 H 0.092 0.908
23 H 0.056 0.944
24 H 0.097 0.903
25 H 0.067 0.933
26 H 0.112 0.888
27 H 0.069 0.931
28 H 0.053 0.947
29 H 0.042 0.958
30 H 0.335 0.665
31 H 0.069 0.931
32 H 0.056 0.944
33 H 0.052 0.948
34 H -0.013 1.013
35 H -0.015 1.015
36 H 0.252 0.748
37 H 0.103 0.897
38 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.109 7.768 10.196 22.186
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.318 6.318
3 C 0.008 3.992
4 C -0.167 4.167
5 C -0.124 4.124
6 C -0.052 4.052
7 N -0.315 5.315
8 C -0.007 4.007
9 H 0.074 0.926
10 C -0.227 4.227
11 C -0.017 4.017
12 C -0.615 4.615
13 H 0.063 0.937
14 C -0.244 4.244
15 N -0.589 5.589
16 Si 0.941 3.059
17 H -0.204 1.204
18 H -0.209 1.209
19 H -0.198 1.198
20 C -0.189 4.189
21 H 0.067 0.933
22 H 0.110 0.890
23 H 0.075 0.925
24 H 0.115 0.885
25 H 0.086 0.914
26 H 0.130 0.870
27 H 0.087 0.913
28 H 0.071 0.929
29 H 0.060 0.940
30 H 0.152 0.848
31 H 0.088 0.912
32 H 0.075 0.925
33 H 0.071 0.929
34 H 0.006 0.994
35 H 0.003 0.997
36 H 0.062 0.938
37 H 0.122 0.878
38 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -16.787 5.697 10.399 20.553
hybrid contribution -1.117 2.280 -0.666 2.625
sum -17.904 7.978 9.733 21.885
Atomic orbital electron populations
1.22985 0.79449 1.03671 1.00962 1.87886 1.21531 1.27748 1.94682
1.23093 0.94580 0.85070 0.96430 1.23244 0.94204 1.03182 0.96100
1.22420 0.92962 0.99449 0.97522 1.21932 0.95185 0.96277 0.91797
1.60315 1.06277 1.59533 1.05421 1.21331 0.90920 0.91033 0.97368
0.92638 1.22411 1.01806 0.97879 1.00635 1.19178 0.93017 0.94866
0.94611 1.22305 1.31099 1.07438 1.00641 0.93687 1.27280 0.94931
1.05167 0.96978 1.70890 1.46526 1.30125 1.11367 0.82912 0.76311
0.72345 0.74376 1.20435 1.20900 1.19751 1.23543 0.96009 1.01560
0.97738 0.93282 0.88976 0.92496 0.88507 0.91420 0.86982 0.91294
0.92854 0.94042 0.84758 0.91245 0.92535 0.92875 0.99438 0.99671
0.93838 0.87827 0.92046
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.39 10.85 113.37 1.23 1.62 16
2 O -0.40 -9.55 10.64 -148.98 -1.58 -11.13 16
3 C 0.07 1.33 4.37 31.12 0.14 1.46 16
4 C -0.13 -2.77 7.47 31.12 0.23 -2.54 16
5 C -0.10 -2.87 3.84 -10.27 -0.04 -2.91 16
6 C 0.08 2.35 5.32 86.30 0.46 2.81 16
7 N -0.68 -26.50 5.96 -491.56 -2.93 -29.43 16
8 C 0.10 4.32 2.53 44.92 0.11 4.44 16
9 H 0.06 2.40 7.80 -2.39 -0.02 2.38 16
10 C -0.17 -5.52 9.16 71.98 0.66 -4.86 16
11 C 0.02 1.11 3.96 29.85 0.12 1.23 16
12 C -0.58 -34.54 8.84 25.60 0.23 -34.31 16
13 H 0.04 2.71 7.74 -2.91 -0.02 2.68 16
14 C -0.05 -2.94 5.46 84.66 0.46 -2.48 16
15 N -0.95 -61.65 13.65 21.45 0.29 -61.36 16
16 Si 1.12 53.98 29.90 68.60 2.05 56.04 16
17 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16
18 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16
19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16
20 C -0.15 -3.32 7.46 31.12 0.23 -3.09 16
21 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16
22 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16
23 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16
24 H 0.10 1.40 7.87 -2.38 -0.02 1.39 16
25 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16
26 H 0.11 1.89 8.10 -2.39 -0.02 1.87 16
27 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16
28 H 0.05 1.77 8.06 -2.38 -0.02 1.75 16
29 H 0.04 1.08 7.14 -2.39 -0.02 1.06 16
30 H 0.33 12.15 8.47 -89.70 -0.76 11.39 16
31 H 0.07 1.87 7.45 -2.39 -0.02 1.85 16
32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16
33 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16
34 H -0.01 -0.71 8.00 -2.39 -0.02 -0.73 16
35 H -0.01 -0.87 8.01 -2.39 -0.02 -0.89 16
36 H 0.25 16.54 7.22 -92.71 -0.67 15.87 16
37 H 0.10 1.88 7.90 -2.39 -0.02 1.86 16
38 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16
Total: -1.00 -71.00 309.63 2.00 -69.00
By element:
Atomic # 1 Polarization: 15.18 SS G_CDS: 0.35 Total: 15.53 kcal
Atomic # 6 Polarization: -42.47 SS G_CDS: 3.83 Total: -38.64 kcal
Atomic # 7 Polarization: -88.15 SS G_CDS: -2.64 Total: -90.79 kcal
Atomic # 8 Polarization: -9.55 SS G_CDS: -1.58 Total: -11.13 kcal
Atomic # 14 Polarization: 53.98 SS G_CDS: 2.05 Total: 56.04 kcal
Total: -71.00 2.00 -69.00 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000705533686.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.747 kcal
(2) G-P(sol) polarization free energy of solvation -71.005 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.258 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.001 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.254 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds