Wall clock time and date at job start Mon Mar 30 2020 04:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99785 * 2 1 4 4 C 1.53780 * 113.61431 * 149.99943 * 3 2 1 5 5 C 1.53788 * 87.07917 * 89.20286 * 4 3 2 6 6 C 1.53000 * 113.61337 * 139.98014 * 5 4 3 7 7 N 1.46893 * 109.47101 * 174.99681 * 6 5 4 8 8 C 1.46904 * 111.00244 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47164 * 35.00209 * 8 7 6 10 10 C 1.53004 * 109.47219 * 275.00615 * 8 7 6 11 11 C 1.53002 * 109.47145 * 155.00252 * 8 7 6 12 12 C 1.50696 * 109.46919 * 295.00022 * 11 8 7 13 13 H 1.07999 * 120.00202 * 359.97438 * 12 11 8 14 14 C 1.37884 * 119.99746 * 180.02562 * 12 11 8 15 15 N 1.31514 * 119.99573 * 0.27650 * 14 12 11 16 16 Si 1.86800 * 119.99781 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46758 * 89.99934 * 16 14 12 18 18 H 1.48499 * 109.47026 * 209.99782 * 16 14 12 19 19 H 1.48496 * 109.47474 * 329.99818 * 16 14 12 20 20 C 1.53775 * 87.07879 * 25.43438 * 5 4 3 21 21 H 1.08999 * 109.47533 * 60.00137 * 1 2 3 22 22 H 1.09008 * 109.46539 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47353 * 299.99344 * 1 2 3 24 24 H 1.09004 * 112.84928 * 18.80448 * 3 2 1 25 25 H 1.09000 * 113.61604 * 334.65416 * 4 3 2 26 26 H 1.09003 * 113.61352 * 203.74736 * 4 3 2 27 27 H 1.08994 * 113.61376 * 270.79509 * 5 4 3 28 28 H 1.09010 * 109.47032 * 54.99827 * 6 5 4 29 29 H 1.08997 * 109.47677 * 295.00394 * 6 5 4 30 30 H 1.00898 * 111.00298 * 56.05055 * 7 6 5 31 31 H 1.09001 * 109.47356 * 59.99403 * 10 8 7 32 32 H 1.09000 * 109.47210 * 180.02562 * 10 8 7 33 33 H 1.09002 * 109.46722 * 299.99865 * 10 8 7 34 34 H 1.09000 * 109.46497 * 175.00287 * 11 8 7 35 35 H 1.08999 * 109.46623 * 55.00351 * 11 8 7 36 36 H 0.97001 * 120.00651 * 359.71956 * 15 14 12 37 37 H 1.08997 * 113.61592 * 89.12164 * 20 5 4 38 38 H 1.09006 * 113.61216 * 220.01674 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.3754 1.3720 0.7045 5 6 4.0062 1.0354 -0.6571 6 6 5.2904 1.8149 -0.9471 7 7 5.8776 1.3398 -2.2069 8 6 7.1155 2.0671 -2.5181 9 1 7.6449 2.2956 -1.5931 10 6 6.7731 3.3692 -3.2448 11 6 8.0041 1.2015 -3.4137 12 6 8.4419 -0.0237 -2.6534 13 1 8.1190 -0.1702 -1.6332 14 6 9.2555 -0.9572 -3.2598 15 7 9.6539 -0.7755 -4.4999 16 14 9.7987 -2.4757 -2.3171 17 1 8.8123 -3.5662 -2.5244 18 1 11.1304 -2.9128 -2.8077 19 1 9.8853 -2.1551 -0.8697 20 6 2.7530 1.6512 -1.3013 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 1.3136 2.0789 0.3238 25 1 3.5175 0.5949 1.4556 26 1 3.6303 2.3669 1.0698 27 1 4.1107 -0.0344 -0.8373 28 1 6.0004 1.6608 -0.1344 29 1 5.0597 2.8768 -1.0314 30 1 5.2152 1.4123 -2.9646 31 1 6.1400 3.9858 -2.6068 32 1 7.6917 3.9086 -3.4761 33 1 6.2437 3.1406 -4.1698 34 1 8.8810 1.7735 -3.7170 35 1 7.4436 0.8993 -4.2983 36 1 9.3721 0.0131 -4.9893 37 1 2.8377 2.7224 -1.4844 38 1 2.3926 1.0996 -2.1696 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705533686.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:07 Heat of formation + Delta-G solvation = -62.253863 kcal Electronic energy + Delta-G solvation = -15938.932424 eV Core-core repulsion = 13394.663687 eV Total energy + Delta-G solvation = -2544.268737 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.62664 -38.39498 -36.84043 -34.97197 -32.02208 -28.81904 -27.92979 -26.97563 -26.45854 -24.97025 -23.05713 -21.67666 -20.33289 -18.87929 -17.45018 -16.62439 -16.57860 -16.17500 -15.76604 -15.65807 -15.27188 -14.95926 -14.37494 -14.15045 -13.91401 -13.33018 -13.30591 -13.03002 -12.99385 -12.64673 -12.53397 -12.41502 -12.20742 -11.92071 -11.72527 -11.51827 -11.27913 -10.88799 -10.59544 -10.46546 -10.42687 -9.02611 -8.56547 -6.21375 1.52863 1.62749 1.80273 2.62074 2.77421 3.21728 3.35095 3.68945 3.74681 3.89458 4.03989 4.14006 4.33138 4.37063 4.45840 4.52674 4.56278 4.57828 4.76067 4.79064 4.83712 4.83735 4.89058 4.90710 5.09539 5.12325 5.14228 5.25530 5.30738 5.44771 5.52870 6.14348 6.33006 6.34522 6.41390 6.67860 6.76612 7.55666 8.84638 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026528 B = 0.005752 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.224388 B = 4866.660660 C = 5552.869895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.066 3.934 4 C -0.129 4.129 5 C -0.105 4.105 6 C 0.077 3.923 7 N -0.685 5.685 8 C 0.103 3.897 9 H 0.055 0.945 10 C -0.168 4.168 11 C 0.021 3.979 12 C -0.576 4.576 13 H 0.045 0.955 14 C -0.048 4.048 15 N -0.950 5.950 16 Si 1.118 2.882 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.272 1.272 20 C -0.151 4.151 21 H 0.048 0.952 22 H 0.092 0.908 23 H 0.056 0.944 24 H 0.097 0.903 25 H 0.067 0.933 26 H 0.112 0.888 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.042 0.958 30 H 0.335 0.665 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.052 0.948 34 H -0.013 1.013 35 H -0.015 1.015 36 H 0.252 0.748 37 H 0.103 0.897 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.109 7.768 10.196 22.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C 0.008 3.992 4 C -0.167 4.167 5 C -0.124 4.124 6 C -0.052 4.052 7 N -0.315 5.315 8 C -0.007 4.007 9 H 0.074 0.926 10 C -0.227 4.227 11 C -0.017 4.017 12 C -0.615 4.615 13 H 0.063 0.937 14 C -0.244 4.244 15 N -0.589 5.589 16 Si 0.941 3.059 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.198 1.198 20 C -0.189 4.189 21 H 0.067 0.933 22 H 0.110 0.890 23 H 0.075 0.925 24 H 0.115 0.885 25 H 0.086 0.914 26 H 0.130 0.870 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.152 0.848 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.006 0.994 35 H 0.003 0.997 36 H 0.062 0.938 37 H 0.122 0.878 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.787 5.697 10.399 20.553 hybrid contribution -1.117 2.280 -0.666 2.625 sum -17.904 7.978 9.733 21.885 Atomic orbital electron populations 1.22985 0.79449 1.03671 1.00962 1.87886 1.21531 1.27748 1.94682 1.23093 0.94580 0.85070 0.96430 1.23244 0.94204 1.03182 0.96100 1.22420 0.92962 0.99449 0.97522 1.21932 0.95185 0.96277 0.91797 1.60315 1.06277 1.59533 1.05421 1.21331 0.90920 0.91033 0.97368 0.92638 1.22411 1.01806 0.97879 1.00635 1.19178 0.93017 0.94866 0.94611 1.22305 1.31099 1.07438 1.00641 0.93687 1.27280 0.94931 1.05167 0.96978 1.70890 1.46526 1.30125 1.11367 0.82912 0.76311 0.72345 0.74376 1.20435 1.20900 1.19751 1.23543 0.96009 1.01560 0.97738 0.93282 0.88976 0.92496 0.88507 0.91420 0.86982 0.91294 0.92854 0.94042 0.84758 0.91245 0.92535 0.92875 0.99438 0.99671 0.93838 0.87827 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.85 113.37 1.23 1.62 16 2 O -0.40 -9.55 10.64 -148.98 -1.58 -11.13 16 3 C 0.07 1.33 4.37 31.12 0.14 1.46 16 4 C -0.13 -2.77 7.47 31.12 0.23 -2.54 16 5 C -0.10 -2.87 3.84 -10.27 -0.04 -2.91 16 6 C 0.08 2.35 5.32 86.30 0.46 2.81 16 7 N -0.68 -26.50 5.96 -491.56 -2.93 -29.43 16 8 C 0.10 4.32 2.53 44.92 0.11 4.44 16 9 H 0.06 2.40 7.80 -2.39 -0.02 2.38 16 10 C -0.17 -5.52 9.16 71.98 0.66 -4.86 16 11 C 0.02 1.11 3.96 29.85 0.12 1.23 16 12 C -0.58 -34.54 8.84 25.60 0.23 -34.31 16 13 H 0.04 2.71 7.74 -2.91 -0.02 2.68 16 14 C -0.05 -2.94 5.46 84.66 0.46 -2.48 16 15 N -0.95 -61.65 13.65 21.45 0.29 -61.36 16 16 Si 1.12 53.98 29.90 68.60 2.05 56.04 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 18 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 C -0.15 -3.32 7.46 31.12 0.23 -3.09 16 21 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 22 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 23 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.10 1.40 7.87 -2.38 -0.02 1.39 16 25 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.11 1.89 8.10 -2.39 -0.02 1.87 16 27 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.05 1.77 8.06 -2.38 -0.02 1.75 16 29 H 0.04 1.08 7.14 -2.39 -0.02 1.06 16 30 H 0.33 12.15 8.47 -89.70 -0.76 11.39 16 31 H 0.07 1.87 7.45 -2.39 -0.02 1.85 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16 34 H -0.01 -0.71 8.00 -2.39 -0.02 -0.73 16 35 H -0.01 -0.87 8.01 -2.39 -0.02 -0.89 16 36 H 0.25 16.54 7.22 -92.71 -0.67 15.87 16 37 H 0.10 1.88 7.90 -2.39 -0.02 1.86 16 38 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -71.00 309.63 2.00 -69.00 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.35 Total: 15.53 kcal Atomic # 6 Polarization: -42.47 SS G_CDS: 3.83 Total: -38.64 kcal Atomic # 7 Polarization: -88.15 SS G_CDS: -2.64 Total: -90.79 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -1.58 Total: -11.13 kcal Atomic # 14 Polarization: 53.98 SS G_CDS: 2.05 Total: 56.04 kcal Total: -71.00 2.00 -69.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705533686.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.747 kcal (2) G-P(sol) polarization free energy of solvation -71.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds