Wall clock time and date at job start Mon Mar 30 2020 03:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47241 * 2 1 4 4 N 1.46907 * 109.46762 * 240.00742 * 2 1 3 5 5 C 1.46901 * 110.99913 * 85.00019 * 4 2 1 6 6 C 1.52997 * 109.46950 * 180.02562 * 5 4 2 7 7 O 1.42903 * 109.47322 * 65.00025 * 6 5 4 8 8 C 1.42901 * 114.00141 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47205 * 179.97438 * 8 7 6 10 10 H 1.08008 * 119.99826 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00364 * 179.97438 * 9 8 7 12 12 N 1.31521 * 120.00000 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00410 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47253 * 60.00137 * 13 11 9 15 15 H 1.48503 * 109.47363 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47225 * 299.99761 * 13 11 9 17 17 C 1.52995 * 109.47564 * 120.00659 * 2 1 3 18 18 C 1.53006 * 115.55057 * 85.57786 * 17 2 1 19 19 C 1.52996 * 117.50022 * 231.25128 * 17 2 1 20 20 C 1.52998 * 117.49891 * 299.91505 * 17 2 1 21 21 H 1.09005 * 109.46811 * 299.99206 * 1 2 3 22 22 H 1.08996 * 109.47385 * 59.98809 * 1 2 3 23 23 H 1.09001 * 109.47241 * 179.97438 * 1 2 3 24 24 H 1.00901 * 110.99692 * 208.95304 * 4 2 1 25 25 H 1.09002 * 109.46958 * 299.99550 * 5 4 2 26 26 H 1.08995 * 109.47079 * 60.00072 * 5 4 2 27 27 H 1.09003 * 109.47025 * 184.99714 * 6 5 4 28 28 H 1.08998 * 109.47091 * 305.00093 * 6 5 4 29 29 H 1.08997 * 109.46832 * 299.99990 * 8 7 6 30 30 H 1.09004 * 109.46824 * 60.00058 * 8 7 6 31 31 H 0.96994 * 120.00579 * 180.02562 * 12 11 9 32 32 H 1.09001 * 109.47002 * 60.00028 * 18 17 2 33 33 H 1.08993 * 109.46955 * 180.02562 * 18 17 2 34 34 H 1.09000 * 109.47050 * 300.00294 * 18 17 2 35 35 H 1.09006 * 117.49850 * 215.00000 * 19 17 2 36 36 H 1.08993 * 117.49905 * 0.02562 * 19 17 2 37 37 H 1.09004 * 117.49854 * 359.96662 * 20 17 2 38 38 H 1.08999 * 117.50000 * 144.97659 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1996 5 6 2.0823 0.2229 -2.3469 6 6 2.5948 -0.5328 -3.5746 7 8 1.6489 -1.5381 -3.9443 8 6 2.0338 -2.3066 -5.0860 9 6 0.9696 -3.3311 -5.3839 10 1 0.0873 -3.3893 -4.7637 11 6 1.1217 -4.1935 -6.4489 12 7 2.1958 -4.1223 -7.2045 13 14 -0.1978 -5.4630 -6.8186 14 1 -1.4838 -4.7740 -7.0958 15 1 0.2016 -6.2608 -8.0057 16 1 -0.3604 -6.3630 -5.6487 17 6 2.0401 -0.7214 1.2491 18 6 2.1598 -2.2421 1.1303 19 6 3.0764 0.0037 2.1099 20 6 1.6375 -0.1486 2.6095 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5140 -0.8898 23 1 -0.3634 -1.0277 -0.0005 24 1 2.9172 -1.1204 -1.0290 25 1 1.0869 0.6166 -2.5525 26 1 2.7587 1.0464 -2.1182 27 1 2.7258 0.1647 -4.4020 28 1 3.5504 -1.0017 -3.3399 29 1 2.1535 -1.6462 -5.9449 30 1 2.9777 -2.8123 -4.8822 31 1 2.3027 -4.7287 -7.9539 32 1 2.8541 -2.4903 0.3275 33 1 2.5291 -2.6520 2.0703 34 1 1.1809 -2.6673 0.9085 35 1 3.8436 -0.6026 2.5916 36 1 3.3945 0.9948 1.7866 37 1 1.0097 0.7424 2.6146 38 1 1.4577 -0.8552 3.4198 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706833960.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:34 Heat of formation + Delta-G solvation = -34.496598 kcal Electronic energy + Delta-G solvation = -15851.806059 eV Core-core repulsion = 13308.740968 eV Total energy + Delta-G solvation = -2543.065091 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.05679 -36.84345 -34.92025 -32.63611 -30.60295 -28.58228 -27.72769 -26.35983 -23.13084 -22.38190 -22.21190 -21.22371 -18.68546 -16.49694 -16.17667 -15.59548 -15.41002 -14.59653 -14.54345 -14.10575 -13.67726 -13.29858 -12.95865 -12.63248 -12.33855 -12.21573 -11.98043 -11.86622 -11.57193 -11.38279 -11.18175 -10.79853 -10.73404 -10.60460 -10.43749 -10.20384 -9.93492 -9.66285 -9.03286 -8.73414 -8.11681 -8.05485 -6.04374 -4.05208 3.37065 3.39072 3.43648 3.63032 4.23315 4.40985 4.59251 4.77882 4.83815 4.98382 5.05249 5.31990 5.33131 5.47412 5.48729 5.67236 5.72246 5.73073 5.78909 5.83543 5.95580 5.98957 6.01731 6.07141 6.14841 6.18503 6.33281 6.41541 6.51534 7.17524 7.32158 7.50814 7.66170 7.87436 8.24098 8.69482 9.09528 9.59433 11.07349 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037046 B = 0.004887 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.630572 B = 5728.590814 C = 5999.228974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.122 3.878 3 H 0.037 0.963 4 N -0.667 5.667 5 C 0.065 3.935 6 C 0.066 3.934 7 O -0.379 6.379 8 C 0.194 3.806 9 C -0.510 4.510 10 H 0.066 0.934 11 C 0.055 3.945 12 N -0.901 5.901 13 Si 0.907 3.093 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.275 1.275 17 C -0.124 4.124 18 C -0.107 4.107 19 C -0.182 4.182 20 C -0.171 4.171 21 H 0.049 0.951 22 H 0.054 0.946 23 H 0.065 0.935 24 H 0.340 0.660 25 H 0.077 0.923 26 H 0.031 0.969 27 H 0.039 0.961 28 H 0.033 0.967 29 H 0.002 0.998 30 H 0.003 0.997 31 H 0.263 0.737 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.285 8.857 16.616 18.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.013 3.987 3 H 0.054 0.946 4 N -0.300 5.300 5 C -0.065 4.065 6 C -0.012 4.012 7 O -0.299 6.299 8 C 0.119 3.881 9 C -0.548 4.548 10 H 0.084 0.916 11 C -0.145 4.145 12 N -0.541 5.541 13 Si 0.735 3.265 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.200 1.200 17 C -0.125 4.125 18 C -0.164 4.164 19 C -0.219 4.219 20 C -0.209 4.209 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.160 0.840 25 H 0.095 0.905 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.019 0.981 30 H 0.021 0.979 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.579 8.487 16.367 18.445 hybrid contribution 0.534 -0.031 -0.249 0.590 sum 1.113 8.456 16.117 18.235 Atomic orbital electron populations 1.21748 0.94320 1.02751 1.00561 1.21002 0.95970 0.94129 0.87648 0.94553 1.60461 1.33551 1.32820 1.03153 1.22027 1.01110 0.92931 0.90388 1.22219 0.92755 0.91602 0.94664 1.87960 1.43932 1.47902 1.50064 1.20173 0.95992 0.89666 0.82247 1.21034 1.05513 1.15572 1.12706 0.91568 1.24941 0.96180 0.97687 0.95737 1.69959 1.27287 1.38604 1.18240 0.86406 0.81529 0.80936 0.77650 1.20063 1.21245 1.20012 1.21686 1.03013 0.96071 0.91683 1.21199 1.02952 0.91216 1.01048 1.23141 0.92609 1.01688 1.04474 1.22992 0.97738 1.03014 0.97106 0.93193 0.92682 0.91623 0.84042 0.90453 0.95092 0.94317 0.94874 0.98063 0.97937 0.92716 0.91492 0.93309 0.91490 0.88913 0.89207 0.88949 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.26 37.16 0.34 -1.37 16 2 C 0.12 1.53 2.71 -67.71 -0.18 1.34 16 3 H 0.04 0.44 7.56 -51.93 -0.39 0.05 16 4 N -0.67 -10.05 5.72 -106.72 -0.61 -10.66 16 5 C 0.06 1.00 5.87 -3.82 -0.02 0.98 16 6 C 0.07 1.25 6.22 37.16 0.23 1.48 16 7 O -0.38 -9.44 10.27 -35.23 -0.36 -9.80 16 8 C 0.19 5.47 5.69 36.00 0.20 5.67 16 9 C -0.51 -15.41 9.43 -34.44 -0.32 -15.74 16 10 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.47 13.29 55.43 0.74 -26.74 16 13 Si 0.91 22.29 29.54 -169.99 -5.02 17.27 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 17 C -0.12 -1.36 1.81 -154.51 -0.28 -1.64 16 18 C -0.11 -1.24 9.15 37.16 0.34 -0.90 16 19 C -0.18 -1.72 9.89 -26.69 -0.26 -1.99 16 20 C -0.17 -1.60 9.45 -26.69 -0.25 -1.85 16 21 H 0.05 0.53 7.29 -51.93 -0.38 0.15 16 22 H 0.05 0.73 7.45 -51.93 -0.39 0.34 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.34 4.92 6.99 -39.29 -0.27 4.65 16 25 H 0.08 1.24 7.44 -51.93 -0.39 0.86 16 26 H 0.03 0.40 8.05 -51.93 -0.42 -0.01 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 30 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.07 0.83 6.77 -51.93 -0.35 0.48 16 33 H 0.05 0.49 8.11 -51.93 -0.42 0.07 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 0.82 8.05 -51.93 -0.42 0.40 16 37 H 0.09 0.81 7.61 -51.93 -0.40 0.42 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 311.64 15.07 4.70 4.70 Total: -1.00 -31.43 311.64 -7.61 -39.04 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.75 Total: -1.32 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -0.30 Total: -12.48 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.13 Total: -37.40 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -0.36 Total: -9.80 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.43 -7.61 -39.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706833960.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.543 kcal (2) G-P(sol) polarization free energy of solvation -31.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds