Wall clock time and date at job start Mon Mar 30 2020 03:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47241 * 2 1 4 4 N 1.46907 * 109.46762 * 240.00742 * 2 1 3 5 5 C 1.46901 * 110.99913 * 85.00019 * 4 2 1 6 6 C 1.52997 * 109.46950 * 180.02562 * 5 4 2 7 7 O 1.42903 * 109.47322 * 65.00025 * 6 5 4 8 8 C 1.42901 * 114.00141 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47205 * 179.97438 * 8 7 6 10 10 H 1.08008 * 119.99826 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00364 * 179.97438 * 9 8 7 12 12 N 1.31521 * 120.00000 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00410 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47253 * 60.00137 * 13 11 9 15 15 H 1.48503 * 109.47363 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47225 * 299.99761 * 13 11 9 17 17 C 1.52995 * 109.47564 * 120.00659 * 2 1 3 18 18 C 1.53006 * 115.55057 * 85.57786 * 17 2 1 19 19 C 1.52996 * 117.50022 * 231.25128 * 17 2 1 20 20 C 1.52998 * 117.49891 * 299.91505 * 17 2 1 21 21 H 1.09005 * 109.46811 * 299.99206 * 1 2 3 22 22 H 1.08996 * 109.47385 * 59.98809 * 1 2 3 23 23 H 1.09001 * 109.47241 * 179.97438 * 1 2 3 24 24 H 1.00901 * 110.99692 * 208.95304 * 4 2 1 25 25 H 1.09002 * 109.46958 * 299.99550 * 5 4 2 26 26 H 1.08995 * 109.47079 * 60.00072 * 5 4 2 27 27 H 1.09003 * 109.47025 * 184.99714 * 6 5 4 28 28 H 1.08998 * 109.47091 * 305.00093 * 6 5 4 29 29 H 1.08997 * 109.46832 * 299.99990 * 8 7 6 30 30 H 1.09004 * 109.46824 * 60.00058 * 8 7 6 31 31 H 0.96994 * 120.00579 * 180.02562 * 12 11 9 32 32 H 1.09001 * 109.47002 * 60.00028 * 18 17 2 33 33 H 1.08993 * 109.46955 * 180.02562 * 18 17 2 34 34 H 1.09000 * 109.47050 * 300.00294 * 18 17 2 35 35 H 1.09006 * 117.49850 * 215.00000 * 19 17 2 36 36 H 1.08993 * 117.49905 * 0.02562 * 19 17 2 37 37 H 1.09004 * 117.49854 * 359.96662 * 20 17 2 38 38 H 1.08999 * 117.50000 * 144.97659 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1996 5 6 2.0823 0.2229 -2.3469 6 6 2.5948 -0.5328 -3.5746 7 8 1.6489 -1.5381 -3.9443 8 6 2.0338 -2.3066 -5.0860 9 6 0.9696 -3.3311 -5.3839 10 1 0.0873 -3.3893 -4.7637 11 6 1.1217 -4.1935 -6.4489 12 7 2.1958 -4.1223 -7.2045 13 14 -0.1978 -5.4630 -6.8186 14 1 -1.4838 -4.7740 -7.0958 15 1 0.2016 -6.2608 -8.0057 16 1 -0.3604 -6.3630 -5.6487 17 6 2.0401 -0.7214 1.2491 18 6 2.1598 -2.2421 1.1303 19 6 3.0764 0.0037 2.1099 20 6 1.6375 -0.1486 2.6095 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5140 -0.8898 23 1 -0.3634 -1.0277 -0.0005 24 1 2.9172 -1.1204 -1.0290 25 1 1.0869 0.6166 -2.5525 26 1 2.7587 1.0464 -2.1182 27 1 2.7258 0.1647 -4.4020 28 1 3.5504 -1.0017 -3.3399 29 1 2.1535 -1.6462 -5.9449 30 1 2.9777 -2.8123 -4.8822 31 1 2.3027 -4.7287 -7.9539 32 1 2.8541 -2.4903 0.3275 33 1 2.5291 -2.6520 2.0703 34 1 1.1809 -2.6673 0.9085 35 1 3.8436 -0.6026 2.5916 36 1 3.3945 0.9948 1.7866 37 1 1.0097 0.7424 2.6146 38 1 1.4577 -0.8552 3.4198 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706833960.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:33 Heat of formation + Delta-G solvation = -54.916113 kcal Electronic energy + Delta-G solvation = -15852.691516 eV Core-core repulsion = 13308.740968 eV Total energy + Delta-G solvation = -2543.950548 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.98482 -38.58437 -36.19079 -34.83276 -31.86465 -29.67704 -29.34959 -28.02836 -24.51968 -24.12951 -23.12804 -22.52507 -19.61746 -18.60284 -17.60480 -17.17297 -16.76174 -16.31643 -15.91213 -15.36333 -15.08391 -14.78881 -14.13265 -14.00768 -13.68143 -13.39693 -13.26572 -12.99026 -12.92268 -12.76477 -12.71894 -12.48949 -12.26180 -12.17523 -11.78033 -11.54944 -11.26441 -11.04719 -10.83776 -10.50628 -10.17392 -9.22231 -8.30463 -6.42453 1.40239 1.45365 1.53701 2.36309 2.84403 3.03085 3.16728 3.27611 3.73857 3.96403 4.04052 4.15400 4.25047 4.26608 4.45879 4.55066 4.61356 4.68083 4.77398 4.82343 4.89779 4.92231 4.98525 5.02815 5.03690 5.09420 5.20726 5.23434 5.29531 5.40149 5.50639 5.56808 5.99067 6.21683 6.51485 6.60108 6.88051 7.29802 8.81788 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037046 B = 0.004887 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.630572 B = 5728.590814 C = 5999.228974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.125 3.875 3 H 0.048 0.952 4 N -0.688 5.688 5 C 0.075 3.925 6 C 0.056 3.944 7 O -0.395 6.395 8 C 0.209 3.791 9 C -0.546 4.546 10 H 0.059 0.941 11 C 0.007 3.993 12 N -0.932 5.932 13 Si 0.983 3.017 14 H -0.266 1.266 15 H -0.274 1.274 16 H -0.266 1.266 17 C -0.141 4.141 18 C -0.104 4.104 19 C -0.173 4.173 20 C -0.161 4.161 21 H 0.072 0.928 22 H 0.043 0.957 23 H 0.045 0.955 24 H 0.342 0.658 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.038 0.962 29 H -0.017 1.017 30 H -0.017 1.017 31 H 0.271 0.729 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.876 9.127 17.789 20.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.016 3.984 3 H 0.066 0.934 4 N -0.322 5.322 5 C -0.054 4.054 6 C -0.021 4.021 7 O -0.315 6.315 8 C 0.133 3.867 9 C -0.584 4.584 10 H 0.077 0.923 11 C -0.191 4.191 12 N -0.571 5.571 13 Si 0.805 3.195 14 H -0.190 1.190 15 H -0.198 1.198 16 H -0.191 1.191 17 C -0.142 4.142 18 C -0.161 4.161 19 C -0.209 4.209 20 C -0.198 4.198 21 H 0.091 0.909 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.161 0.839 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.001 0.999 30 H 0.001 0.999 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.180 8.780 17.558 19.632 hybrid contribution 0.721 -0.051 -0.575 0.924 sum 0.901 8.729 16.983 19.116 Atomic orbital electron populations 1.21740 0.94733 1.01581 1.01114 1.21013 0.95572 0.94598 0.87251 0.93424 1.60420 1.33922 1.33635 1.04184 1.21913 1.01303 0.93160 0.89032 1.22580 0.92248 0.90676 0.96638 1.87916 1.45847 1.49051 1.48663 1.19793 0.94752 0.89355 0.82768 1.21351 1.06037 1.17225 1.13792 0.92273 1.25948 0.98677 0.99585 0.94930 1.70064 1.29053 1.39448 1.18544 0.85248 0.78346 0.77912 0.77981 1.19042 1.19843 1.19092 1.21575 1.05236 0.95410 0.91943 1.21136 1.01562 0.92123 1.01288 1.23201 0.92769 1.01718 1.03260 1.23079 0.97788 1.03144 0.95825 0.90921 0.93822 0.93605 0.83868 0.91173 0.91719 0.93515 0.94345 0.99897 0.99924 0.92066 0.92909 0.91763 0.93294 0.88169 0.88559 0.88107 0.88012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 9.26 71.98 0.67 -2.61 16 2 C 0.12 2.95 2.71 44.91 0.12 3.07 16 3 H 0.05 1.03 7.56 -2.39 -0.02 1.01 16 4 N -0.69 -20.43 5.72 -491.57 -2.81 -23.24 16 5 C 0.07 2.25 5.87 86.30 0.51 2.76 16 6 C 0.06 2.14 6.22 71.98 0.45 2.58 16 7 O -0.40 -20.18 10.27 -148.98 -1.53 -21.71 16 8 C 0.21 12.17 5.69 71.23 0.41 12.57 16 9 C -0.55 -33.70 9.43 25.60 0.24 -33.46 16 10 H 0.06 3.64 7.81 -2.91 -0.02 3.61 16 11 C 0.01 0.41 5.46 84.65 0.46 0.87 16 12 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 13 Si 0.98 45.46 29.54 68.60 2.03 47.49 16 14 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 15 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 17 C -0.14 -2.87 1.81 -52.18 -0.09 -2.97 16 18 C -0.10 -2.36 9.15 71.98 0.66 -1.70 16 19 C -0.17 -2.81 9.89 30.62 0.30 -2.50 16 20 C -0.16 -2.58 9.45 30.62 0.29 -2.29 16 21 H 0.07 1.41 7.29 -2.38 -0.02 1.39 16 22 H 0.04 1.14 7.45 -2.39 -0.02 1.12 16 23 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.34 9.80 6.99 -89.69 -0.63 9.17 16 25 H 0.07 2.21 7.44 -2.39 -0.02 2.19 16 26 H 0.06 1.53 8.05 -2.39 -0.02 1.51 16 27 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 30 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 31 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 32 H 0.05 1.32 6.77 -2.39 -0.02 1.30 16 33 H 0.06 1.21 8.11 -2.39 -0.02 1.19 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.10 1.46 8.05 -2.39 -0.02 1.44 16 37 H 0.10 1.46 7.61 -2.39 -0.02 1.44 16 38 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -67.57 311.64 2.36 -65.21 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.38 Total: 12.80 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: 4.01 Total: -23.67 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -2.53 Total: -80.13 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -1.53 Total: -21.71 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -67.57 2.36 -65.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706833960.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.296 kcal (2) G-P(sol) polarization free energy of solvation -67.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds