Wall clock time and date at job start Mon Mar 30 2020 04:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09009 * 109.46814 * 2 1 4 4 C 1.52999 * 109.46961 * 240.00397 * 2 1 3 5 5 C 1.50710 * 109.46989 * 170.42216 * 4 2 1 6 6 H 1.07993 * 119.99551 * 354.30619 * 5 4 2 7 7 C 1.37874 * 119.99569 * 174.31096 * 5 4 2 8 8 N 1.31511 * 120.00753 * 0.02562 * 7 5 4 9 9 Si 1.86809 * 119.99616 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46984 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47175 * 120.00033 * 9 7 5 12 12 H 1.48498 * 109.46975 * 239.99858 * 9 7 5 13 13 N 1.46892 * 109.47504 * 120.00282 * 2 1 3 14 14 C 1.46903 * 111.00155 * 192.88143 * 13 2 1 15 15 C 1.46906 * 110.99977 * 316.83020 * 13 2 1 16 16 H 1.09004 * 110.01156 * 47.31077 * 15 13 2 17 17 C 1.54264 * 110.03340 * 285.86786 * 15 13 2 18 18 C 1.54888 * 104.19472 * 217.10071 * 17 15 13 19 19 C 1.54892 * 102.74745 * 37.94351 * 18 17 15 20 20 C 1.53871 * 110.03305 * 168.69751 * 15 13 2 21 21 H 1.08997 * 110.03215 * 238.62179 * 20 15 13 22 22 O 1.42902 * 110.03430 * 0.02562 * 20 15 13 23 23 H 1.09001 * 109.46521 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46806 * 299.99514 * 1 2 3 25 25 H 1.08996 * 109.47124 * 60.00123 * 1 2 3 26 26 H 1.09001 * 109.47077 * 290.41921 * 4 2 1 27 27 H 1.08997 * 109.47248 * 50.42522 * 4 2 1 28 28 H 0.96994 * 120.00543 * 180.02562 * 8 7 5 29 29 H 1.08994 * 109.47032 * 39.80762 * 14 13 2 30 30 H 1.09005 * 109.47072 * 159.81309 * 14 13 2 31 31 H 1.09000 * 109.46565 * 279.80709 * 14 13 2 32 32 H 1.09004 * 110.48742 * 335.78072 * 17 15 13 33 33 H 1.08994 * 110.48760 * 98.42476 * 17 15 13 34 34 H 1.08996 * 110.75788 * 279.62510 * 18 17 15 35 35 H 1.09000 * 110.91208 * 156.32653 * 18 17 15 36 36 H 1.09000 * 110.48588 * 203.37530 * 19 18 17 37 37 H 1.09004 * 110.48965 * 80.73466 * 19 18 17 38 38 H 0.96696 * 114.00289 * 180.02562 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5284 -0.5197 -1.3732 6 1 4.0430 0.1384 -0.6888 7 6 4.2329 -1.1756 -2.3604 8 7 3.6062 -1.9765 -3.1941 9 14 6.0780 -0.9264 -2.5135 10 1 6.5390 0.0168 -1.4633 11 1 6.7691 -2.2301 -2.3466 12 1 6.3925 -0.3675 -3.8529 13 7 2.0198 -0.6925 1.1993 14 6 3.4558 -0.4530 1.3960 15 6 1.2523 -0.2949 2.3871 16 1 0.1845 -0.3324 2.1711 17 6 1.6544 1.1290 2.8239 18 6 1.6192 1.0757 4.3715 19 6 2.1772 -0.3364 4.6776 20 6 1.5847 -1.2266 3.5657 21 1 0.6783 -1.7162 3.9217 22 8 2.5432 -2.2058 3.1604 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 1.8231 -1.7863 -1.1680 27 1 1.5439 -0.3155 -2.1310 28 1 4.1019 -2.4382 -3.8883 29 1 3.6869 0.5851 1.1579 30 1 3.7189 -0.6551 2.4344 31 1 4.0268 -1.1118 0.7418 32 1 2.6588 1.3663 2.4731 33 1 0.9365 1.8594 2.4510 34 1 0.5976 1.1753 4.7383 35 1 2.2594 1.8457 4.8019 36 1 1.8409 -0.6753 5.6575 37 1 3.2660 -0.3359 4.6262 38 1 2.7938 -2.8242 3.8602 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708602762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:07 Heat of formation + Delta-G solvation = -40.726654 kcal Electronic energy + Delta-G solvation = -17180.568050 eV Core-core repulsion = 14637.232803 eV Total energy + Delta-G solvation = -2543.335247 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.50187 -36.23668 -34.43576 -32.53001 -30.57271 -28.51690 -27.42835 -26.37761 -24.03579 -22.71524 -20.85312 -19.86259 -18.39262 -17.20831 -16.21822 -15.53253 -14.95399 -14.51633 -14.37082 -13.77729 -13.39041 -13.27311 -12.58302 -12.08865 -11.86170 -11.53024 -11.46153 -11.34113 -11.07777 -10.99497 -10.82838 -10.76783 -10.60251 -10.37071 -10.27370 -10.13443 -9.85701 -9.50952 -8.92100 -8.72030 -8.21072 -7.16664 -5.85727 -3.83192 3.38248 3.45764 3.48883 4.41648 4.56797 4.70692 4.76214 4.97607 5.16716 5.41854 5.50359 5.59578 5.63169 5.69523 5.81780 5.91534 5.96741 6.04283 6.07752 6.13958 6.23850 6.33571 6.35811 6.59311 6.65787 6.67738 6.89769 7.15925 7.36820 7.71496 7.85758 8.00241 8.13189 8.25013 8.36119 8.59347 9.19855 9.76086 11.26207 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032433 B = 0.008213 C = 0.007497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.103901 B = 3408.257907 C = 3733.856660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.083 3.917 3 H 0.025 0.975 4 C 0.031 3.969 5 C -0.507 4.507 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.884 3.116 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.287 1.287 13 N -0.496 5.496 14 C 0.045 3.955 15 C 0.074 3.926 16 H 0.090 0.910 17 C -0.162 4.162 18 C -0.119 4.119 19 C -0.160 4.160 20 C 0.108 3.892 21 H 0.051 0.949 22 O -0.529 6.529 23 H 0.057 0.943 24 H 0.042 0.958 25 H 0.052 0.948 26 H 0.031 0.969 27 H 0.012 0.988 28 H 0.257 0.743 29 H 0.009 0.991 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.639 3.692 15.010 16.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 H 0.043 0.957 4 C -0.006 4.006 5 C -0.546 4.546 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.712 3.288 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.219 5.219 14 C -0.102 4.102 15 C -0.036 4.036 16 H 0.108 0.892 17 C -0.201 4.201 18 C -0.157 4.157 19 C -0.198 4.198 20 C 0.048 3.952 21 H 0.069 0.931 22 O -0.331 6.331 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.030 0.970 28 H 0.067 0.933 29 H 0.027 0.973 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -4.728 3.382 14.181 15.326 hybrid contribution 1.171 0.749 0.527 1.486 sum -3.557 4.131 14.709 15.686 Atomic orbital electron populations 1.22067 0.97154 1.01560 0.99967 1.21902 0.92412 0.95384 0.92719 0.95742 1.19122 0.95475 0.96560 0.89452 1.21456 0.93416 1.25917 1.13772 0.92147 1.24970 0.97808 0.95626 0.96080 1.69974 1.35339 1.29887 1.18519 0.86666 0.86576 0.77836 0.77695 1.19877 1.21136 1.21320 1.62023 1.03327 1.56538 1.00013 1.22597 0.88656 0.98279 1.00695 1.22657 0.99405 0.90541 0.90987 0.89208 1.23165 1.02742 0.98878 0.95330 1.22317 1.00522 0.96429 0.96400 1.23196 1.01494 0.96500 0.98612 1.22439 0.90703 0.88819 0.93195 0.93111 1.86960 1.61544 1.44903 1.39668 0.92371 0.93964 0.92902 0.95035 0.96966 0.93342 0.97271 0.92879 0.89239 0.90516 0.91969 0.91765 0.91945 0.92012 0.90724 0.79723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.35 37.16 0.31 -2.41 16 2 C 0.08 1.81 2.05 -67.71 -0.14 1.67 16 3 H 0.02 0.55 7.65 -51.92 -0.40 0.15 16 4 C 0.03 0.83 4.63 -27.88 -0.13 0.70 16 5 C -0.51 -14.40 6.91 -34.44 -0.24 -14.64 16 6 H 0.06 1.67 5.35 -52.49 -0.28 1.39 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -27.64 13.29 55.43 0.74 -26.90 16 9 Si 0.88 22.17 29.54 -169.99 -5.02 17.15 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 13 N -0.50 -10.10 4.07 -225.56 -0.92 -11.02 16 14 C 0.05 0.94 5.99 60.07 0.36 1.30 16 15 C 0.07 1.19 2.42 -66.59 -0.16 1.03 16 16 H 0.09 1.41 5.43 -51.93 -0.28 1.12 16 17 C -0.16 -2.32 5.79 -25.07 -0.15 -2.47 16 18 C -0.12 -1.36 6.91 -24.74 -0.17 -1.53 16 19 C -0.16 -1.83 6.29 -25.07 -0.16 -1.99 16 20 C 0.11 1.50 3.87 -25.62 -0.10 1.40 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 22 O -0.53 -8.21 10.09 -35.23 -0.36 -8.57 16 23 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.04 0.65 6.09 -51.93 -0.32 0.34 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.01 0.34 8.12 -51.93 -0.42 -0.08 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.01 0.19 5.85 -51.93 -0.30 -0.11 16 30 H 0.05 1.00 5.17 -51.93 -0.27 0.73 16 31 H 0.09 2.19 6.16 -51.93 -0.32 1.87 16 32 H 0.08 1.24 5.66 -51.93 -0.29 0.95 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16 38 H 0.36 3.86 9.11 45.56 0.42 4.28 16 LS Contribution 282.67 15.07 4.26 4.26 Total: -1.00 -31.69 282.67 -7.35 -39.04 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.38 Total: 1.45 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -0.67 Total: -15.41 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: -0.18 Total: -37.92 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -0.36 Total: -8.57 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.69 -7.35 -39.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708602762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.691 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds