Wall clock time and date at job start Mon Mar 30 2020 04:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09009 * 109.46814 * 2 1 4 4 C 1.52999 * 109.46961 * 240.00397 * 2 1 3 5 5 C 1.50710 * 109.46989 * 170.42216 * 4 2 1 6 6 H 1.07993 * 119.99551 * 354.30619 * 5 4 2 7 7 C 1.37874 * 119.99569 * 174.31096 * 5 4 2 8 8 N 1.31511 * 120.00753 * 0.02562 * 7 5 4 9 9 Si 1.86809 * 119.99616 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46984 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47175 * 120.00033 * 9 7 5 12 12 H 1.48498 * 109.46975 * 239.99858 * 9 7 5 13 13 N 1.46892 * 109.47504 * 120.00282 * 2 1 3 14 14 C 1.46903 * 111.00155 * 192.88143 * 13 2 1 15 15 C 1.46906 * 110.99977 * 316.83020 * 13 2 1 16 16 H 1.09004 * 110.01156 * 47.31077 * 15 13 2 17 17 C 1.54264 * 110.03340 * 285.86786 * 15 13 2 18 18 C 1.54888 * 104.19472 * 217.10071 * 17 15 13 19 19 C 1.54892 * 102.74745 * 37.94351 * 18 17 15 20 20 C 1.53871 * 110.03305 * 168.69751 * 15 13 2 21 21 H 1.08997 * 110.03215 * 238.62179 * 20 15 13 22 22 O 1.42902 * 110.03430 * 0.02562 * 20 15 13 23 23 H 1.09001 * 109.46521 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46806 * 299.99514 * 1 2 3 25 25 H 1.08996 * 109.47124 * 60.00123 * 1 2 3 26 26 H 1.09001 * 109.47077 * 290.41921 * 4 2 1 27 27 H 1.08997 * 109.47248 * 50.42522 * 4 2 1 28 28 H 0.96994 * 120.00543 * 180.02562 * 8 7 5 29 29 H 1.08994 * 109.47032 * 39.80762 * 14 13 2 30 30 H 1.09005 * 109.47072 * 159.81309 * 14 13 2 31 31 H 1.09000 * 109.46565 * 279.80709 * 14 13 2 32 32 H 1.09004 * 110.48742 * 335.78072 * 17 15 13 33 33 H 1.08994 * 110.48760 * 98.42476 * 17 15 13 34 34 H 1.08996 * 110.75788 * 279.62510 * 18 17 15 35 35 H 1.09000 * 110.91208 * 156.32653 * 18 17 15 36 36 H 1.09000 * 110.48588 * 203.37530 * 19 18 17 37 37 H 1.09004 * 110.48965 * 80.73466 * 19 18 17 38 38 H 0.96696 * 114.00289 * 180.02562 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5284 -0.5197 -1.3732 6 1 4.0430 0.1384 -0.6888 7 6 4.2329 -1.1756 -2.3604 8 7 3.6062 -1.9765 -3.1941 9 14 6.0780 -0.9264 -2.5135 10 1 6.5390 0.0168 -1.4633 11 1 6.7691 -2.2301 -2.3466 12 1 6.3925 -0.3675 -3.8529 13 7 2.0198 -0.6925 1.1993 14 6 3.4558 -0.4530 1.3960 15 6 1.2523 -0.2949 2.3871 16 1 0.1845 -0.3324 2.1711 17 6 1.6544 1.1290 2.8239 18 6 1.6192 1.0757 4.3715 19 6 2.1772 -0.3364 4.6776 20 6 1.5847 -1.2266 3.5657 21 1 0.6783 -1.7162 3.9217 22 8 2.5432 -2.2058 3.1604 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 1.8231 -1.7863 -1.1680 27 1 1.5439 -0.3155 -2.1310 28 1 4.1019 -2.4382 -3.8883 29 1 3.6869 0.5851 1.1579 30 1 3.7189 -0.6551 2.4344 31 1 4.0268 -1.1118 0.7418 32 1 2.6588 1.3663 2.4731 33 1 0.9365 1.8594 2.4510 34 1 0.5976 1.1753 4.7383 35 1 2.2594 1.8457 4.8019 36 1 1.8409 -0.6753 5.6575 37 1 3.2660 -0.3359 4.6262 38 1 2.7938 -2.8242 3.8602 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708602762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:06 Heat of formation + Delta-G solvation = -63.816815 kcal Electronic energy + Delta-G solvation = -17181.569314 eV Core-core repulsion = 14637.232803 eV Total energy + Delta-G solvation = -2544.336511 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.78856 -37.70461 -35.66819 -34.58567 -32.23992 -30.24026 -28.48578 -27.96542 -25.70613 -24.63581 -21.98821 -21.29527 -19.80718 -18.60831 -18.22087 -16.80332 -16.58969 -16.27218 -15.68994 -15.01617 -14.94929 -14.55099 -14.15843 -13.80045 -13.41387 -13.24937 -13.13850 -12.89594 -12.69009 -12.56601 -12.32576 -12.22841 -11.96345 -11.89812 -11.86231 -11.66786 -11.24847 -10.89929 -10.87636 -10.51270 -10.39844 -8.75897 -8.11599 -6.15915 1.37930 1.38981 1.50943 2.44095 3.12801 3.23623 3.65080 3.74354 3.80739 4.14331 4.33117 4.35696 4.44497 4.49763 4.60679 4.64196 4.68903 4.83891 4.84795 4.94330 5.02052 5.04298 5.13945 5.17264 5.26991 5.29741 5.40356 5.42094 5.55543 5.60528 5.67764 5.91065 6.30899 6.57572 6.66111 6.95378 7.20719 7.47488 9.01306 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032433 B = 0.008213 C = 0.007497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.103901 B = 3408.257907 C = 3733.856660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.091 3.909 3 H 0.017 0.983 4 C 0.037 3.963 5 C -0.514 4.514 6 H 0.065 0.935 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.954 3.046 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.280 1.280 13 N -0.513 5.513 14 C 0.062 3.938 15 C 0.065 3.935 16 H 0.097 0.903 17 C -0.161 4.161 18 C -0.111 4.111 19 C -0.151 4.151 20 C 0.106 3.894 21 H 0.069 0.931 22 O -0.561 6.561 23 H 0.051 0.949 24 H 0.075 0.925 25 H 0.056 0.944 26 H -0.007 1.007 27 H -0.012 1.012 28 H 0.259 0.741 29 H 0.001 0.999 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.753 4.640 17.460 18.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.017 4.017 3 H 0.035 0.965 4 C 0.000 4.000 5 C -0.552 4.552 6 H 0.083 0.917 7 C -0.200 4.200 8 N -0.580 5.580 9 Si 0.779 3.221 10 H -0.187 1.187 11 H -0.208 1.208 12 H -0.206 1.206 13 N -0.236 5.236 14 C -0.086 4.086 15 C -0.044 4.044 16 H 0.114 0.886 17 C -0.200 4.200 18 C -0.148 4.148 19 C -0.188 4.188 20 C 0.046 3.954 21 H 0.087 0.913 22 O -0.366 6.366 23 H 0.070 0.930 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.012 0.988 27 H 0.006 0.994 28 H 0.068 0.932 29 H 0.019 0.981 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -4.846 4.336 16.665 17.888 hybrid contribution 1.156 0.420 -0.210 1.248 sum -3.690 4.756 16.455 17.521 Atomic orbital electron populations 1.21973 0.94272 1.01757 1.01822 1.21639 0.94700 0.93962 0.91395 0.96527 1.18986 0.95045 0.94593 0.91385 1.21791 0.94387 1.25543 1.13477 0.91718 1.25864 1.02906 0.95413 0.95810 1.70114 1.37371 1.31110 1.19366 0.85565 0.80487 0.77995 0.78043 1.18659 1.20756 1.20609 1.61842 1.03318 1.57130 1.01339 1.22305 0.88938 0.96517 1.00804 1.22876 0.99045 0.92529 0.89944 0.88560 1.23095 1.01444 0.97580 0.97882 1.22318 1.02087 0.96701 0.93742 1.23119 1.00805 0.95918 0.98999 1.22542 0.91451 0.88689 0.92700 0.91278 1.86881 1.62130 1.45947 1.41651 0.92966 0.90627 0.92532 0.98813 0.99354 0.93234 0.98094 0.90735 0.93512 0.92761 0.91390 0.89706 0.90842 0.89178 0.91672 0.77442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.99 8.35 71.98 0.60 -4.39 16 2 C 0.09 4.00 2.05 44.92 0.09 4.10 16 3 H 0.02 0.76 7.65 -2.38 -0.02 0.74 16 4 C 0.04 2.08 4.63 29.85 0.14 2.22 16 5 C -0.51 -30.09 6.91 25.60 0.18 -29.91 16 6 H 0.06 3.66 5.35 -2.91 -0.02 3.64 16 7 C 0.00 -0.22 5.46 84.65 0.46 0.25 16 8 N -0.94 -59.65 13.29 21.45 0.28 -59.36 16 9 Si 0.95 46.36 29.54 68.60 2.03 48.39 16 10 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 13 N -0.51 -20.87 4.07 -867.54 -3.53 -24.40 16 14 C 0.06 2.62 5.99 127.69 0.76 3.39 16 15 C 0.06 1.96 2.42 45.64 0.11 2.07 16 16 H 0.10 2.75 5.43 -2.38 -0.01 2.74 16 17 C -0.16 -4.23 5.79 31.67 0.18 -4.05 16 18 C -0.11 -2.09 6.91 31.89 0.22 -1.87 16 19 C -0.15 -2.89 6.29 31.67 0.20 -2.69 16 20 C 0.11 2.63 3.87 31.32 0.12 2.75 16 21 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 22 O -0.56 -16.57 10.09 -148.98 -1.50 -18.08 16 23 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.08 2.17 6.09 -2.39 -0.01 2.15 16 25 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 26 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 27 H -0.01 -0.70 8.12 -2.39 -0.02 -0.72 16 28 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 29 H 0.00 0.03 5.85 -2.39 -0.01 0.02 16 30 H 0.07 2.76 5.17 -2.38 -0.01 2.75 16 31 H 0.05 2.34 6.16 -2.39 -0.01 2.33 16 32 H 0.05 1.68 5.66 -2.38 -0.01 1.67 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.06 1.39 7.68 -2.39 -0.02 1.37 16 38 H 0.38 7.45 9.11 -74.06 -0.67 6.78 16 Total: -1.00 -70.58 282.67 0.72 -69.86 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.37 Total: 11.72 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: 3.07 Total: -28.14 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -3.24 Total: -83.76 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -1.50 Total: -18.08 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -70.58 0.72 -69.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708602762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.048 kcal (2) G-P(sol) polarization free energy of solvation -70.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds