Wall clock time and date at job start Mon Mar 30 2020 03:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46931 * 2 1 4 4 C 1.52999 * 109.47055 * 239.99757 * 2 1 3 5 5 C 1.50696 * 109.46967 * 174.99932 * 4 2 1 6 6 H 1.08008 * 120.00350 * 0.02562 * 5 4 2 7 7 C 1.37885 * 120.00170 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99813 * 179.97438 * 7 5 4 9 9 Si 1.86791 * 119.99521 * 0.02562 * 7 5 4 10 10 H 1.48508 * 109.47324 * 90.00202 * 9 7 5 11 11 H 1.48507 * 109.47165 * 209.99608 * 9 7 5 12 12 H 1.48493 * 109.47474 * 329.99919 * 9 7 5 13 13 N 1.46901 * 109.47008 * 119.99751 * 2 1 3 14 14 C 1.47902 * 110.99972 * 62.72994 * 13 2 1 15 15 C 1.53995 * 107.05612 * 214.15687 * 14 13 2 16 16 H 1.09001 * 110.30772 * 120.14255 * 15 14 13 17 17 C 1.53007 * 110.30531 * 242.30651 * 15 14 13 18 18 C 1.54589 * 105.14152 * 1.22243 * 15 14 13 19 19 H 1.08997 * 110.88062 * 263.52945 * 18 15 14 20 20 C 1.53005 * 110.72708 * 140.31891 * 18 15 14 21 21 O 1.42891 * 109.47217 * 180.02562 * 20 18 15 22 22 C 1.48535 * 111.00054 * 305.33163 * 13 2 1 23 23 H 1.09003 * 109.47208 * 66.66728 * 1 2 3 24 24 H 1.08997 * 109.47082 * 186.66708 * 1 2 3 25 25 H 1.08999 * 109.46795 * 306.66885 * 1 2 3 26 26 H 1.08998 * 109.47263 * 294.99965 * 4 2 1 27 27 H 1.09002 * 109.46946 * 55.00585 * 4 2 1 28 28 H 0.96999 * 119.99899 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.91619 * 333.50609 * 14 13 2 30 30 H 1.08999 * 109.91561 * 94.60630 * 14 13 2 31 31 H 1.09002 * 109.46610 * 175.71755 * 17 15 14 32 32 H 1.08993 * 109.46874 * 295.71309 * 17 15 14 33 33 H 1.08994 * 109.46871 * 55.71790 * 17 15 14 34 34 H 1.08996 * 109.46808 * 60.03957 * 20 18 15 35 35 H 1.09008 * 109.46504 * 300.04670 * 20 18 15 36 36 H 0.96703 * 113.99772 * 179.97438 * 21 20 18 37 37 H 1.09000 * 110.66907 * 41.28889 * 22 13 2 38 38 H 1.08998 * 110.66976 * 278.15371 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0861 -0.5391 7 6 4.2305 -1.1936 -2.3577 8 7 5.5411 -1.1003 -2.4133 9 14 3.3015 -2.1088 -3.6952 10 1 2.9409 -1.1639 -4.7826 11 1 4.1600 -3.1896 -4.2432 12 1 2.0654 -2.7003 -3.1232 13 7 2.0197 -0.6924 1.1995 14 6 1.5998 -2.1106 1.2013 15 6 1.3466 -2.5049 2.6682 16 1 0.3136 -2.8264 2.8006 17 6 2.3085 -3.6164 3.0929 18 6 1.6175 -1.2201 3.4841 19 1 2.6321 -1.2194 3.8823 20 6 0.5952 -1.0697 4.6126 21 8 0.8696 0.1245 5.3478 22 6 1.4410 -0.0973 2.4312 23 1 -0.3634 0.4070 -0.9436 24 1 -0.3633 -1.0207 0.1193 25 1 -0.3633 0.6137 0.8243 26 1 1.7517 -1.7715 -1.2055 27 1 1.6054 -0.2617 -2.1369 28 1 6.0255 -1.5077 -3.1483 29 1 0.6839 -2.2275 0.6220 30 1 2.3888 -2.7320 0.7776 31 1 2.1696 -3.8318 4.1524 32 1 2.1057 -4.5147 2.5099 33 1 3.3352 -3.2944 2.9191 34 1 0.6607 -1.9296 5.2791 35 1 -0.4077 -1.0137 4.1891 36 1 0.2589 0.2844 6.0803 37 1 0.3853 0.1332 2.2879 38 1 1.9943 0.7950 2.7239 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708685645.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:14 Heat of formation + Delta-G solvation = -52.864865 kcal Electronic energy + Delta-G solvation = -16765.156315 eV Core-core repulsion = 14221.294716 eV Total energy + Delta-G solvation = -2543.861599 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.46597 -36.78402 -34.72376 -32.37929 -30.55409 -29.51944 -27.82871 -25.75916 -24.58382 -22.54589 -21.05386 -19.88318 -18.53767 -17.16131 -16.56099 -16.04655 -15.28134 -14.35791 -14.13667 -13.86966 -13.62783 -13.23401 -12.81428 -12.77322 -12.40751 -12.17790 -11.80430 -11.59169 -11.40619 -11.16677 -10.85305 -10.67038 -10.56688 -10.44457 -10.21779 -10.20299 -9.89100 -9.61460 -9.43733 -9.02352 -8.40717 -7.50883 -5.88757 -3.83022 3.36185 3.43947 3.46321 4.12309 4.55648 4.64756 4.86042 4.93670 5.12467 5.31923 5.36819 5.45041 5.54806 5.60201 5.73282 5.75919 5.79039 5.85283 5.91635 6.03117 6.08405 6.23252 6.31950 6.41497 6.47790 6.53985 6.60546 6.74094 6.81502 7.11493 7.40899 7.55541 7.70506 7.84836 7.99751 8.74796 9.25113 9.74081 11.25286 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034676 B = 0.007277 C = 0.006905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.287819 B = 3846.646519 C = 4054.020605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.086 3.914 3 H 0.077 0.923 4 C -0.009 4.009 5 C -0.492 4.492 6 H 0.080 0.920 7 C 0.062 3.938 8 N -0.907 5.907 9 Si 0.872 3.128 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.486 5.486 14 C 0.042 3.958 15 C -0.096 4.096 16 H 0.067 0.933 17 C -0.140 4.140 18 C -0.088 4.088 19 H 0.089 0.911 20 C 0.087 3.913 21 O -0.570 6.570 22 C 0.038 3.962 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.017 0.983 27 H 0.013 0.987 28 H 0.259 0.741 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.374 0.626 37 H 0.042 0.958 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.429 -2.227 12.536 17.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.023 4.023 3 H 0.095 0.905 4 C -0.046 4.046 5 C -0.530 4.530 6 H 0.098 0.902 7 C -0.138 4.138 8 N -0.547 5.547 9 Si 0.700 3.300 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.194 1.194 13 N -0.209 5.209 14 C -0.086 4.086 15 C -0.115 4.115 16 H 0.085 0.915 17 C -0.198 4.198 18 C -0.107 4.107 19 H 0.107 0.893 20 C 0.008 3.992 21 O -0.375 6.375 22 C -0.090 4.090 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.035 0.965 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.220 0.780 37 H 0.060 0.940 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.206 -2.189 11.950 16.527 hybrid contribution -1.810 -0.681 -0.481 1.993 sum -13.016 -2.870 11.468 17.583 Atomic orbital electron populations 1.22592 0.99903 1.01100 1.01265 1.21802 0.89824 0.99043 0.91632 0.90475 1.19706 0.98036 0.95286 0.91566 1.21086 0.89391 1.33839 1.08729 0.90199 1.25013 0.94665 0.96302 0.97785 1.69914 1.06411 1.46131 1.32280 0.86910 0.80189 0.80073 0.82812 1.20578 1.21597 1.19375 1.64967 1.53970 1.01065 1.00894 1.22934 0.99924 0.91816 0.93905 1.21989 0.99079 0.94735 0.95690 0.91507 1.21823 1.00161 0.97720 1.00076 1.22141 0.99694 0.95171 0.93691 0.89266 1.22231 0.97491 0.86403 0.93027 1.86542 1.58575 1.43984 1.48351 1.23281 0.97918 0.97481 0.90327 0.92448 0.92921 0.93337 0.96530 0.96908 0.93080 0.93911 0.89617 0.93314 0.92676 0.91601 0.93872 0.94020 0.78011 0.93971 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.16 8.38 37.16 0.31 -2.85 16 2 C 0.09 1.75 2.45 -67.71 -0.17 1.58 16 3 H 0.08 1.65 8.14 -51.92 -0.42 1.23 16 4 C -0.01 -0.21 3.33 -27.89 -0.09 -0.30 16 5 C -0.49 -14.21 9.39 -34.44 -0.32 -14.53 16 6 H 0.08 2.54 7.99 -52.48 -0.42 2.12 16 7 C 0.06 1.84 5.47 -17.82 -0.10 1.74 16 8 N -0.91 -28.63 13.96 55.43 0.77 -27.85 16 9 Si 0.87 22.11 27.47 -169.99 -4.67 17.44 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.27 -6.54 6.54 56.52 0.37 -6.17 16 13 N -0.49 -9.56 5.06 -222.49 -1.13 -10.68 16 14 C 0.04 0.75 4.72 -2.75 -0.01 0.74 16 15 C -0.10 -1.34 3.17 -89.26 -0.28 -1.62 16 16 H 0.07 0.82 7.85 -51.93 -0.41 0.41 16 17 C -0.14 -1.82 8.89 37.16 0.33 -1.48 16 18 C -0.09 -1.25 2.89 -88.76 -0.26 -1.51 16 19 H 0.09 1.39 7.87 -51.93 -0.41 0.99 16 20 C 0.09 0.98 6.35 37.16 0.24 1.21 16 21 O -0.57 -6.61 13.50 -35.23 -0.48 -7.08 16 22 C 0.04 0.62 5.65 -1.90 -0.01 0.61 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.05 0.85 5.94 -51.93 -0.31 0.54 16 25 H 0.05 0.73 6.35 -51.93 -0.33 0.40 16 26 H 0.02 0.40 5.77 -51.93 -0.30 0.10 16 27 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 28 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 29 H 0.04 0.75 5.29 -51.93 -0.27 0.47 16 30 H 0.09 1.73 7.65 -51.93 -0.40 1.33 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.04 0.43 8.10 -51.92 -0.42 0.01 16 36 H 0.37 2.43 9.12 45.56 0.42 2.85 16 37 H 0.04 0.65 5.48 -51.93 -0.28 0.37 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 291.71 15.07 4.40 4.40 Total: -1.00 -32.35 291.71 -7.12 -39.47 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -5.65 Total: 0.72 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -0.36 Total: -16.42 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.35 Total: -38.54 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.48 Total: -7.08 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.35 -7.12 -39.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708685645.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.395 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds