Wall clock time and date at job start Mon Mar 30 2020 03:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46931 * 2 1 4 4 C 1.52999 * 109.47055 * 239.99757 * 2 1 3 5 5 C 1.50696 * 109.46967 * 174.99932 * 4 2 1 6 6 H 1.08008 * 120.00350 * 0.02562 * 5 4 2 7 7 C 1.37885 * 120.00170 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99813 * 179.97438 * 7 5 4 9 9 Si 1.86791 * 119.99521 * 0.02562 * 7 5 4 10 10 H 1.48508 * 109.47324 * 90.00202 * 9 7 5 11 11 H 1.48507 * 109.47165 * 209.99608 * 9 7 5 12 12 H 1.48493 * 109.47474 * 329.99919 * 9 7 5 13 13 N 1.46901 * 109.47008 * 119.99751 * 2 1 3 14 14 C 1.47902 * 110.99972 * 62.72994 * 13 2 1 15 15 C 1.53995 * 107.05612 * 214.15687 * 14 13 2 16 16 H 1.09001 * 110.30772 * 120.14255 * 15 14 13 17 17 C 1.53007 * 110.30531 * 242.30651 * 15 14 13 18 18 C 1.54589 * 105.14152 * 1.22243 * 15 14 13 19 19 H 1.08997 * 110.88062 * 263.52945 * 18 15 14 20 20 C 1.53005 * 110.72708 * 140.31891 * 18 15 14 21 21 O 1.42891 * 109.47217 * 180.02562 * 20 18 15 22 22 C 1.48535 * 111.00054 * 305.33163 * 13 2 1 23 23 H 1.09003 * 109.47208 * 66.66728 * 1 2 3 24 24 H 1.08997 * 109.47082 * 186.66708 * 1 2 3 25 25 H 1.08999 * 109.46795 * 306.66885 * 1 2 3 26 26 H 1.08998 * 109.47263 * 294.99965 * 4 2 1 27 27 H 1.09002 * 109.46946 * 55.00585 * 4 2 1 28 28 H 0.96999 * 119.99899 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.91619 * 333.50609 * 14 13 2 30 30 H 1.08999 * 109.91561 * 94.60630 * 14 13 2 31 31 H 1.09002 * 109.46610 * 175.71755 * 17 15 14 32 32 H 1.08993 * 109.46874 * 295.71309 * 17 15 14 33 33 H 1.08994 * 109.46871 * 55.71790 * 17 15 14 34 34 H 1.08996 * 109.46808 * 60.03957 * 20 18 15 35 35 H 1.09008 * 109.46504 * 300.04670 * 20 18 15 36 36 H 0.96703 * 113.99772 * 179.97438 * 21 20 18 37 37 H 1.09000 * 110.66907 * 41.28889 * 22 13 2 38 38 H 1.08998 * 110.66976 * 278.15371 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0861 -0.5391 7 6 4.2305 -1.1936 -2.3577 8 7 5.5411 -1.1003 -2.4133 9 14 3.3015 -2.1088 -3.6952 10 1 2.9409 -1.1639 -4.7826 11 1 4.1600 -3.1896 -4.2432 12 1 2.0654 -2.7003 -3.1232 13 7 2.0197 -0.6924 1.1995 14 6 1.5998 -2.1106 1.2013 15 6 1.3466 -2.5049 2.6682 16 1 0.3136 -2.8264 2.8006 17 6 2.3085 -3.6164 3.0929 18 6 1.6175 -1.2201 3.4841 19 1 2.6321 -1.2194 3.8823 20 6 0.5952 -1.0697 4.6126 21 8 0.8696 0.1245 5.3478 22 6 1.4410 -0.0973 2.4312 23 1 -0.3634 0.4070 -0.9436 24 1 -0.3633 -1.0207 0.1193 25 1 -0.3633 0.6137 0.8243 26 1 1.7517 -1.7715 -1.2055 27 1 1.6054 -0.2617 -2.1369 28 1 6.0255 -1.5077 -3.1483 29 1 0.6839 -2.2275 0.6220 30 1 2.3888 -2.7320 0.7776 31 1 2.1696 -3.8318 4.1524 32 1 2.1057 -4.5147 2.5099 33 1 3.3352 -3.2944 2.9191 34 1 0.6607 -1.9296 5.2791 35 1 -0.4077 -1.0137 4.1891 36 1 0.2589 0.2844 6.0803 37 1 0.3853 0.1332 2.2879 38 1 1.9943 0.7950 2.7239 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708685645.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:14 Heat of formation + Delta-G solvation = -78.136462 kcal Electronic energy + Delta-G solvation = -16766.252174 eV Core-core repulsion = 14221.294716 eV Total energy + Delta-G solvation = -2544.957458 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.78571 -37.79912 -36.11312 -34.47593 -31.98579 -30.84088 -29.57183 -26.98420 -25.90348 -24.30854 -22.47191 -21.07881 -20.04535 -18.80693 -18.05357 -17.36535 -16.54847 -16.19645 -15.45291 -15.04359 -15.00338 -14.75573 -14.31655 -13.97706 -13.88959 -13.80632 -13.50425 -12.97927 -12.71199 -12.63627 -12.46842 -12.20593 -11.82318 -11.67515 -11.61014 -11.56750 -11.47273 -11.31081 -11.06882 -10.78291 -10.69333 -8.95249 -8.19360 -6.19360 1.35140 1.37128 1.48294 2.40248 3.10137 3.19478 3.41820 3.69660 3.79123 4.07600 4.18227 4.30184 4.38105 4.43979 4.50969 4.52416 4.61072 4.66224 4.69396 4.78652 4.92116 4.94679 5.05142 5.10278 5.12940 5.19630 5.20908 5.30202 5.31974 5.49672 5.59654 5.73031 6.27552 6.35514 6.52901 6.89050 6.99610 7.41427 8.98469 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034676 B = 0.007277 C = 0.006905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.287819 B = 3846.646519 C = 4054.020605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.086 3.914 3 H 0.054 0.946 4 C -0.004 4.004 5 C -0.495 4.495 6 H 0.030 0.970 7 C -0.003 4.003 8 N -0.958 5.958 9 Si 0.947 3.053 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.248 1.248 13 N -0.523 5.523 14 C 0.041 3.959 15 C -0.086 4.086 16 H 0.099 0.901 17 C -0.138 4.138 18 C -0.086 4.086 19 H 0.066 0.934 20 C 0.093 3.907 21 O -0.593 6.593 22 C 0.042 3.958 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.021 0.979 27 H 0.020 0.980 28 H 0.262 0.738 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.036 0.964 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.396 0.604 37 H 0.061 0.939 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.779 -3.390 13.155 20.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.023 4.023 3 H 0.073 0.927 4 C -0.041 4.041 5 C -0.534 4.534 6 H 0.048 0.952 7 C -0.198 4.198 8 N -0.601 5.601 9 Si 0.771 3.229 10 H -0.193 1.193 11 H -0.214 1.214 12 H -0.171 1.171 13 N -0.247 5.247 14 C -0.086 4.086 15 C -0.104 4.104 16 H 0.117 0.883 17 C -0.195 4.195 18 C -0.105 4.105 19 H 0.084 0.916 20 C 0.015 3.985 21 O -0.402 6.402 22 C -0.086 4.086 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.039 0.961 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.246 0.754 37 H 0.079 0.921 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.586 -3.340 12.601 19.563 hybrid contribution -0.658 -0.232 -0.594 0.916 sum -15.245 -3.571 12.007 19.731 Atomic orbital electron populations 1.22430 0.96174 1.02298 1.02644 1.21607 0.92727 0.97295 0.90630 0.92721 1.19632 0.94568 0.96012 0.93886 1.21296 0.92084 1.32759 1.07225 0.95207 1.25990 0.95543 0.97506 1.00781 1.70094 1.08562 1.47829 1.33586 0.85712 0.79263 0.78678 0.79259 1.19342 1.21354 1.17141 1.64800 1.55805 1.02371 1.01725 1.22897 0.98795 0.90183 0.96763 1.21953 1.01012 0.94733 0.92747 0.88262 1.21795 0.98251 0.97582 1.01898 1.22103 0.99803 0.94301 0.94294 0.91598 1.22149 0.96787 0.87186 0.92352 1.86486 1.59955 1.44226 1.49529 1.23255 0.98247 0.97483 0.89578 0.91588 0.91835 0.91342 0.96126 0.96207 0.92971 0.93049 0.93201 0.90694 0.91940 0.94476 0.91617 0.92230 0.75388 0.92125 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.40 8.38 71.98 0.60 -4.80 16 2 C 0.09 3.52 2.45 44.92 0.11 3.63 16 3 H 0.05 2.42 8.14 -2.38 -0.02 2.40 16 4 C 0.00 -0.17 3.33 29.85 0.10 -0.07 16 5 C -0.50 -29.73 9.39 25.60 0.24 -29.49 16 6 H 0.03 2.03 7.99 -2.91 -0.02 2.00 16 7 C 0.00 -0.20 5.47 84.66 0.46 0.26 16 8 N -0.96 -62.80 13.96 21.45 0.30 -62.50 16 9 Si 0.95 45.78 27.47 68.60 1.88 47.67 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.25 -11.05 6.54 99.48 0.65 -10.39 16 13 N -0.52 -20.85 5.06 -857.84 -4.34 -25.19 16 14 C 0.04 1.45 4.72 86.45 0.41 1.85 16 15 C -0.09 -2.20 3.17 -9.91 -0.03 -2.24 16 16 H 0.10 1.98 7.85 -2.39 -0.02 1.96 16 17 C -0.14 -3.37 8.89 71.98 0.64 -2.73 16 18 C -0.09 -2.31 2.89 -9.59 -0.03 -2.34 16 19 H 0.07 2.07 7.87 -2.39 -0.02 2.05 16 20 C 0.09 1.77 6.35 71.98 0.46 2.22 16 21 O -0.59 -12.21 13.50 -148.98 -2.01 -14.22 16 22 C 0.04 1.35 5.65 86.65 0.49 1.84 16 23 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.06 1.81 5.94 -2.39 -0.01 1.80 16 25 H 0.07 1.82 6.35 -2.39 -0.02 1.81 16 26 H 0.02 0.98 5.77 -2.39 -0.01 0.96 16 27 H 0.02 0.92 7.57 -2.39 -0.02 0.90 16 28 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 29 H 0.05 1.68 5.29 -2.39 -0.01 1.66 16 30 H 0.05 2.06 7.65 -2.39 -0.02 2.04 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 0.95 8.10 -2.38 -0.02 0.93 16 36 H 0.40 3.92 9.12 -74.06 -0.68 3.25 16 37 H 0.06 1.72 5.48 -2.39 -0.01 1.70 16 38 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -73.35 291.71 -0.42 -73.77 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.30 Total: 12.33 kcal Atomic # 6 Polarization: -35.31 SS G_CDS: 3.45 Total: -31.85 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -4.04 Total: -87.69 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -2.01 Total: -14.22 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.88 Total: 47.67 kcal Total: -73.35 -0.42 -73.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708685645.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.371 kcal (2) G-P(sol) polarization free energy of solvation -73.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds