Wall clock time and date at job start Mon Mar 30 2020 03:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 110.27088 * 2 1 4 4 C 1.53998 * 110.30670 * 237.91804 * 2 1 3 5 5 N 1.47900 * 107.05419 * 242.30729 * 4 2 1 6 6 C 1.46901 * 110.99996 * 214.15887 * 5 4 2 7 7 C 1.53006 * 109.46970 * 307.39460 * 6 5 4 8 8 C 1.52998 * 109.47046 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47013 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00053 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00239 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99906 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00250 * 179.97438 * 11 9 8 14 14 H 1.48509 * 109.47084 * 60.00131 * 13 11 9 15 15 H 1.48497 * 109.47252 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47188 * 300.00155 * 13 11 9 17 17 C 1.48536 * 105.82189 * 334.66788 * 5 4 2 18 18 C 1.54591 * 110.30785 * 122.19976 * 2 1 3 19 19 H 1.08990 * 110.72764 * 22.51580 * 18 2 1 20 20 C 1.52997 * 110.72326 * 259.23003 * 18 2 1 21 21 O 1.42899 * 109.47339 * 180.02562 * 20 18 2 22 22 H 1.09004 * 109.47575 * 180.62896 * 1 2 3 23 23 H 1.09002 * 109.47585 * 300.63435 * 1 2 3 24 24 H 1.09007 * 109.47646 * 60.63372 * 1 2 3 25 25 H 1.08998 * 109.91739 * 122.95561 * 4 2 1 26 26 H 1.08995 * 109.91697 * 1.65745 * 4 2 1 27 27 H 1.08998 * 109.47498 * 67.39328 * 6 5 4 28 28 H 1.09001 * 109.47092 * 187.39784 * 6 5 4 29 29 H 1.08998 * 109.46902 * 300.00233 * 7 6 5 30 30 H 1.09001 * 109.46949 * 60.00236 * 7 6 5 31 31 H 1.09000 * 109.46683 * 299.99981 * 8 7 6 32 32 H 1.08994 * 109.47413 * 60.00023 * 8 7 6 33 33 H 0.97000 * 119.99972 * 180.02562 * 12 11 9 34 34 H 1.09004 * 110.66813 * 157.64005 * 17 5 4 35 35 H 1.09000 * 110.66721 * 280.77504 * 17 5 4 36 36 H 1.09004 * 109.47542 * 300.05174 * 20 18 2 37 37 H 1.09008 * 109.47371 * 60.04698 * 20 18 2 38 38 H 0.96707 * 113.99973 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0644 -0.7671 -1.2237 5 7 2.8312 -1.9228 -0.7102 6 6 3.9751 -2.2246 -1.5811 7 6 3.4913 -2.3743 -3.0249 8 6 4.6825 -2.6892 -3.9319 9 6 4.2060 -2.8361 -5.3540 10 1 3.1583 -2.7172 -5.5875 11 6 5.1076 -3.1223 -6.3571 12 7 6.3834 -3.2676 -6.0727 13 14 4.5169 -3.3051 -8.1198 14 1 3.8785 -2.0391 -8.5617 15 1 5.6733 -3.6094 -9.0003 16 1 3.5294 -4.4113 -8.1987 17 6 3.2855 -1.5354 0.6499 18 6 2.0665 -0.7726 1.2268 19 1 1.3173 -1.4698 1.6015 20 6 2.5052 0.1959 2.3270 21 8 2.9961 -0.5451 3.4460 22 1 -0.3634 -1.0276 0.0113 23 1 -0.3634 0.5236 0.8842 24 1 -0.3634 0.5040 -0.8956 25 1 2.7161 -0.1207 -1.8116 26 1 1.2326 -1.1157 -1.8357 27 1 4.7000 -1.4126 -1.5233 28 1 4.4436 -3.1538 -1.2567 29 1 2.7664 -3.1863 -3.0828 30 1 3.0228 -1.4451 -3.3493 31 1 5.4077 -1.8775 -3.8740 32 1 5.1506 -3.6185 -3.6074 33 1 7.0178 -3.4686 -6.7785 34 1 3.5046 -2.4194 1.2487 35 1 4.1564 -0.8823 0.5931 36 1 3.2938 0.8451 1.9465 37 1 1.6542 0.8020 2.6382 38 1 3.2922 0.0061 4.1834 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708688011.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:45 Heat of formation + Delta-G solvation = -71.060273 kcal Electronic energy + Delta-G solvation = -15913.915359 eV Core-core repulsion = 13369.264748 eV Total energy + Delta-G solvation = -2544.650611 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.46206 -36.79289 -34.66020 -32.93610 -31.07871 -30.11191 -26.83999 -26.09271 -24.29791 -22.27490 -20.86369 -20.52531 -19.14221 -17.37408 -16.33124 -15.97099 -15.38093 -15.01721 -14.41976 -13.91705 -13.68999 -13.41989 -13.30948 -12.99865 -12.28939 -12.23364 -11.96641 -11.50696 -11.24052 -11.15481 -10.89380 -10.78980 -10.67689 -10.55614 -10.50993 -10.38455 -10.11842 -9.62884 -9.28570 -9.02145 -8.30732 -8.06808 -5.96156 -3.98272 3.35908 3.39886 3.42710 3.92447 4.32703 4.50206 4.59229 4.65836 4.91297 5.11519 5.16831 5.32824 5.39449 5.46514 5.50662 5.54724 5.69032 5.76991 5.90344 5.93319 5.96137 6.03807 6.19320 6.19996 6.33574 6.36407 6.73726 6.84142 7.10589 7.28590 7.40308 7.46504 7.71969 7.87444 8.04325 8.47681 9.08670 9.65441 11.15319 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.049294 B = 0.004610 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.879258 B = 6072.285532 C = 6497.927443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 H 0.072 0.928 4 C 0.041 3.959 5 N -0.519 5.519 6 C 0.047 3.953 7 C -0.109 4.109 8 C 0.022 3.978 9 C -0.519 4.519 10 H 0.054 0.946 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.045 3.955 18 C -0.088 4.088 19 H 0.089 0.911 20 C 0.085 3.915 21 O -0.571 6.571 22 H 0.061 0.939 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.029 0.971 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.013 0.987 32 H 0.016 0.984 33 H 0.260 0.740 34 H 0.081 0.919 35 H 0.041 0.959 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.653 8.449 16.181 20.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.087 4.087 5 N -0.243 5.243 6 C -0.080 4.080 7 C -0.146 4.146 8 C -0.016 4.016 9 C -0.557 4.557 10 H 0.072 0.928 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.083 4.083 18 C -0.107 4.107 19 H 0.108 0.892 20 C 0.007 3.993 21 O -0.376 6.376 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.099 0.901 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.031 0.969 32 H 0.035 0.965 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -8.942 7.422 15.699 19.532 hybrid contribution 0.525 1.145 -0.754 1.468 sum -8.417 8.568 14.945 19.173 Atomic orbital electron populations 1.21827 0.94271 1.02308 1.01371 1.22012 0.96461 0.98894 0.94348 0.90925 1.22932 0.98397 0.91486 0.95858 1.64862 1.22157 1.35282 1.01979 1.22461 0.90930 1.00198 0.94448 1.21715 1.00622 1.00632 0.91682 1.19066 0.92369 0.96766 0.93359 1.21217 0.93977 1.47892 0.92628 0.92763 1.25025 0.94904 0.95484 0.99062 1.69959 1.01684 1.49055 1.32938 0.86660 0.78139 0.78602 0.84606 1.20294 1.21309 1.20208 1.23192 0.95357 0.98971 0.90740 1.22153 0.98349 0.96964 0.93237 0.89241 1.22220 0.97023 0.93355 0.86686 1.86517 1.85292 1.37762 1.28042 0.91996 0.93005 0.92418 0.93365 0.90089 0.95290 0.91002 0.92619 0.93423 0.96874 0.96548 0.92999 0.90036 0.94114 0.93723 0.93674 0.77702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.89 37.16 0.33 -1.04 16 2 C -0.10 -1.11 3.16 -89.26 -0.28 -1.39 16 3 H 0.07 0.75 7.85 -51.93 -0.41 0.34 16 4 C 0.04 0.60 4.98 -2.75 -0.01 0.59 16 5 N -0.52 -8.46 5.40 -230.44 -1.24 -9.70 16 6 C 0.05 0.88 4.99 -3.82 -0.02 0.86 16 7 C -0.11 -2.35 4.90 -26.73 -0.13 -2.48 16 8 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 9 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 10 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.90 -27.49 13.29 55.43 0.74 -26.76 16 13 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 C 0.05 0.64 5.86 -1.89 -0.01 0.63 16 18 C -0.09 -1.03 2.89 -88.76 -0.26 -1.29 16 19 H 0.09 1.11 7.86 -51.93 -0.41 0.70 16 20 C 0.09 0.81 6.35 37.16 0.24 1.05 16 21 O -0.57 -5.69 13.50 -35.23 -0.48 -6.17 16 22 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.74 7.14 -51.93 -0.37 0.37 16 26 H 0.08 1.20 7.68 -51.93 -0.40 0.80 16 27 H 0.03 0.54 7.89 -51.93 -0.41 0.13 16 28 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.05 1.01 6.63 -51.93 -0.34 0.66 16 31 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.04 0.58 7.73 -51.93 -0.40 0.18 16 36 H 0.04 0.40 8.10 -51.93 -0.42 -0.02 16 37 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 38 H 0.38 1.94 9.12 45.56 0.42 2.35 16 LS Contribution 303.93 15.07 4.58 4.58 Total: -1.00 -31.92 303.93 -8.21 -40.14 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -6.09 Total: -2.62 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -0.70 Total: -16.49 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: -0.51 Total: -36.46 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -0.48 Total: -6.17 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.92 -8.21 -40.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708688011.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.924 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds