Wall clock time and date at job start Mon Mar 30 2020 03:31:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09006 * 110.27088 * 2 1
4 4 C 1.53998 * 110.30670 * 237.91804 * 2 1 3
5 5 N 1.47900 * 107.05419 * 242.30729 * 4 2 1
6 6 C 1.46901 * 110.99996 * 214.15887 * 5 4 2
7 7 C 1.53006 * 109.46970 * 307.39460 * 6 5 4
8 8 C 1.52998 * 109.47046 * 180.02562 * 7 6 5
9 9 C 1.50694 * 109.47013 * 180.02562 * 8 7 6
10 10 H 1.08001 * 120.00053 * 359.97438 * 9 8 7
11 11 C 1.37875 * 120.00239 * 179.97438 * 9 8 7
12 12 N 1.31514 * 119.99906 * 0.02562 * 11 9 8
13 13 Si 1.86803 * 120.00250 * 179.97438 * 11 9 8
14 14 H 1.48509 * 109.47084 * 60.00131 * 13 11 9
15 15 H 1.48497 * 109.47252 * 179.97438 * 13 11 9
16 16 H 1.48500 * 109.47188 * 300.00155 * 13 11 9
17 17 C 1.48536 * 105.82189 * 334.66788 * 5 4 2
18 18 C 1.54591 * 110.30785 * 122.19976 * 2 1 3
19 19 H 1.08990 * 110.72764 * 22.51580 * 18 2 1
20 20 C 1.52997 * 110.72326 * 259.23003 * 18 2 1
21 21 O 1.42899 * 109.47339 * 180.02562 * 20 18 2
22 22 H 1.09004 * 109.47575 * 180.62896 * 1 2 3
23 23 H 1.09002 * 109.47585 * 300.63435 * 1 2 3
24 24 H 1.09007 * 109.47646 * 60.63372 * 1 2 3
25 25 H 1.08998 * 109.91739 * 122.95561 * 4 2 1
26 26 H 1.08995 * 109.91697 * 1.65745 * 4 2 1
27 27 H 1.08998 * 109.47498 * 67.39328 * 6 5 4
28 28 H 1.09001 * 109.47092 * 187.39784 * 6 5 4
29 29 H 1.08998 * 109.46902 * 300.00233 * 7 6 5
30 30 H 1.09001 * 109.46949 * 60.00236 * 7 6 5
31 31 H 1.09000 * 109.46683 * 299.99981 * 8 7 6
32 32 H 1.08994 * 109.47413 * 60.00023 * 8 7 6
33 33 H 0.97000 * 119.99972 * 180.02562 * 12 11 9
34 34 H 1.09004 * 110.66813 * 157.64005 * 17 5 4
35 35 H 1.09000 * 110.66721 * 280.77504 * 17 5 4
36 36 H 1.09004 * 109.47542 * 300.05174 * 20 18 2
37 37 H 1.09008 * 109.47371 * 60.04698 * 20 18 2
38 38 H 0.96707 * 113.99973 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9076 1.0225 0.0000
4 6 2.0644 -0.7671 -1.2237
5 7 2.8312 -1.9228 -0.7102
6 6 3.9751 -2.2246 -1.5811
7 6 3.4913 -2.3743 -3.0249
8 6 4.6825 -2.6892 -3.9319
9 6 4.2060 -2.8361 -5.3540
10 1 3.1583 -2.7172 -5.5875
11 6 5.1076 -3.1223 -6.3571
12 7 6.3834 -3.2676 -6.0727
13 14 4.5169 -3.3051 -8.1198
14 1 3.8785 -2.0391 -8.5617
15 1 5.6733 -3.6094 -9.0003
16 1 3.5294 -4.4113 -8.1987
17 6 3.2855 -1.5354 0.6499
18 6 2.0665 -0.7726 1.2268
19 1 1.3173 -1.4698 1.6015
20 6 2.5052 0.1959 2.3270
21 8 2.9961 -0.5451 3.4460
22 1 -0.3634 -1.0276 0.0113
23 1 -0.3634 0.5236 0.8842
24 1 -0.3634 0.5040 -0.8956
25 1 2.7161 -0.1207 -1.8116
26 1 1.2326 -1.1157 -1.8357
27 1 4.7000 -1.4126 -1.5233
28 1 4.4436 -3.1538 -1.2567
29 1 2.7664 -3.1863 -3.0828
30 1 3.0228 -1.4451 -3.3493
31 1 5.4077 -1.8775 -3.8740
32 1 5.1506 -3.6185 -3.6074
33 1 7.0178 -3.4686 -6.7785
34 1 3.5046 -2.4194 1.2487
35 1 4.1564 -0.8823 0.5931
36 1 3.2938 0.8451 1.9465
37 1 1.6542 0.8020 2.6382
38 1 3.2922 0.0061 4.1834
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000708688011.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:31:45
Heat of formation + Delta-G solvation = -71.060273 kcal
Electronic energy + Delta-G solvation = -15913.915359 eV
Core-core repulsion = 13369.264748 eV
Total energy + Delta-G solvation = -2544.650611 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.46206 -36.79289 -34.66020 -32.93610 -31.07871 -30.11191 -26.83999 -26.09271
-24.29791 -22.27490 -20.86369 -20.52531 -19.14221 -17.37408 -16.33124 -15.97099
-15.38093 -15.01721 -14.41976 -13.91705 -13.68999 -13.41989 -13.30948 -12.99865
-12.28939 -12.23364 -11.96641 -11.50696 -11.24052 -11.15481 -10.89380 -10.78980
-10.67689 -10.55614 -10.50993 -10.38455 -10.11842 -9.62884 -9.28570 -9.02145
-8.30732 -8.06808 -5.96156 -3.98272 3.35908 3.39886 3.42710 3.92447
4.32703 4.50206 4.59229 4.65836 4.91297 5.11519 5.16831 5.32824
5.39449 5.46514 5.50662 5.54724 5.69032 5.76991 5.90344 5.93319
5.96137 6.03807 6.19320 6.19996 6.33574 6.36407 6.73726 6.84142
7.10589 7.28590 7.40308 7.46504 7.71969 7.87444 8.04325 8.47681
9.08670 9.65441 11.15319
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.049294 B = 0.004610 C = 0.004308
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 567.879258 B = 6072.285532 C = 6497.927443
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.098 4.098
3 H 0.072 0.928
4 C 0.041 3.959
5 N -0.519 5.519
6 C 0.047 3.953
7 C -0.109 4.109
8 C 0.022 3.978
9 C -0.519 4.519
10 H 0.054 0.946
11 C 0.056 3.944
12 N -0.897 5.897
13 Si 0.892 3.108
14 H -0.277 1.277
15 H -0.287 1.287
16 H -0.276 1.276
17 C 0.045 3.955
18 C -0.088 4.088
19 H 0.089 0.911
20 C 0.085 3.915
21 O -0.571 6.571
22 H 0.061 0.939
23 H 0.051 0.949
24 H 0.057 0.943
25 H 0.048 0.952
26 H 0.081 0.919
27 H 0.029 0.971
28 H 0.072 0.928
29 H 0.055 0.945
30 H 0.047 0.953
31 H 0.013 0.987
32 H 0.016 0.984
33 H 0.260 0.740
34 H 0.081 0.919
35 H 0.041 0.959
36 H 0.045 0.955
37 H 0.045 0.955
38 H 0.377 0.623
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.653 8.449 16.181 20.201
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.117 4.117
3 H 0.091 0.909
4 C -0.087 4.087
5 N -0.243 5.243
6 C -0.080 4.080
7 C -0.146 4.146
8 C -0.016 4.016
9 C -0.557 4.557
10 H 0.072 0.928
11 C -0.145 4.145
12 N -0.536 5.536
13 Si 0.720 3.280
14 H -0.203 1.203
15 H -0.213 1.213
16 H -0.202 1.202
17 C -0.083 4.083
18 C -0.107 4.107
19 H 0.108 0.892
20 C 0.007 3.993
21 O -0.376 6.376
22 H 0.080 0.920
23 H 0.070 0.930
24 H 0.076 0.924
25 H 0.066 0.934
26 H 0.099 0.901
27 H 0.047 0.953
28 H 0.090 0.910
29 H 0.074 0.926
30 H 0.066 0.934
31 H 0.031 0.969
32 H 0.035 0.965
33 H 0.070 0.930
34 H 0.100 0.900
35 H 0.059 0.941
36 H 0.063 0.937
37 H 0.063 0.937
38 H 0.223 0.777
Dipole moment (debyes) X Y Z Total
from point charges -8.942 7.422 15.699 19.532
hybrid contribution 0.525 1.145 -0.754 1.468
sum -8.417 8.568 14.945 19.173
Atomic orbital electron populations
1.21827 0.94271 1.02308 1.01371 1.22012 0.96461 0.98894 0.94348
0.90925 1.22932 0.98397 0.91486 0.95858 1.64862 1.22157 1.35282
1.01979 1.22461 0.90930 1.00198 0.94448 1.21715 1.00622 1.00632
0.91682 1.19066 0.92369 0.96766 0.93359 1.21217 0.93977 1.47892
0.92628 0.92763 1.25025 0.94904 0.95484 0.99062 1.69959 1.01684
1.49055 1.32938 0.86660 0.78139 0.78602 0.84606 1.20294 1.21309
1.20208 1.23192 0.95357 0.98971 0.90740 1.22153 0.98349 0.96964
0.93237 0.89241 1.22220 0.97023 0.93355 0.86686 1.86517 1.85292
1.37762 1.28042 0.91996 0.93005 0.92418 0.93365 0.90089 0.95290
0.91002 0.92619 0.93423 0.96874 0.96548 0.92999 0.90036 0.94114
0.93723 0.93674 0.77702
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.37 8.89 37.16 0.33 -1.04 16
2 C -0.10 -1.11 3.16 -89.26 -0.28 -1.39 16
3 H 0.07 0.75 7.85 -51.93 -0.41 0.34 16
4 C 0.04 0.60 4.98 -2.75 -0.01 0.59 16
5 N -0.52 -8.46 5.40 -230.44 -1.24 -9.70 16
6 C 0.05 0.88 4.99 -3.82 -0.02 0.86 16
7 C -0.11 -2.35 4.90 -26.73 -0.13 -2.48 16
8 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16
9 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16
10 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16
11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16
12 N -0.90 -27.49 13.29 55.43 0.74 -26.76 16
13 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16
14 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16
15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
17 C 0.05 0.64 5.86 -1.89 -0.01 0.63 16
18 C -0.09 -1.03 2.89 -88.76 -0.26 -1.29 16
19 H 0.09 1.11 7.86 -51.93 -0.41 0.70 16
20 C 0.09 0.81 6.35 37.16 0.24 1.05 16
21 O -0.57 -5.69 13.50 -35.23 -0.48 -6.17 16
22 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16
23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16
24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
25 H 0.05 0.74 7.14 -51.93 -0.37 0.37 16
26 H 0.08 1.20 7.68 -51.93 -0.40 0.80 16
27 H 0.03 0.54 7.89 -51.93 -0.41 0.13 16
28 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16
29 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16
30 H 0.05 1.01 6.63 -51.93 -0.34 0.66 16
31 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16
32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16
33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16
34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16
35 H 0.04 0.58 7.73 -51.93 -0.40 0.18 16
36 H 0.04 0.40 8.10 -51.93 -0.42 -0.02 16
37 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16
38 H 0.38 1.94 9.12 45.56 0.42 2.35 16
LS Contribution 303.93 15.07 4.58 4.58
Total: -1.00 -31.92 303.93 -8.21 -40.14
By element:
Atomic # 1 Polarization: 3.47 SS G_CDS: -6.09 Total: -2.62 kcal
Atomic # 6 Polarization: -15.79 SS G_CDS: -0.70 Total: -16.49 kcal
Atomic # 7 Polarization: -35.95 SS G_CDS: -0.51 Total: -36.46 kcal
Atomic # 8 Polarization: -5.69 SS G_CDS: -0.48 Total: -6.17 kcal
Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal
Total LS contribution 4.58 Total: 4.58 kcal
Total: -31.92 -8.21 -40.14 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000708688011.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.924 kcal
(2) G-P(sol) polarization free energy of solvation -31.924 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.848 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.136 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.060 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds