Wall clock time and date at job start Mon Mar 30 2020 03:31:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09006 * 110.27088 * 2 1
4 4 C 1.53998 * 110.30670 * 237.91804 * 2 1 3
5 5 N 1.47900 * 107.05419 * 242.30729 * 4 2 1
6 6 C 1.46901 * 110.99996 * 214.15887 * 5 4 2
7 7 C 1.53006 * 109.46970 * 307.39460 * 6 5 4
8 8 C 1.52998 * 109.47046 * 180.02562 * 7 6 5
9 9 C 1.50694 * 109.47013 * 180.02562 * 8 7 6
10 10 H 1.08001 * 120.00053 * 359.97438 * 9 8 7
11 11 C 1.37875 * 120.00239 * 179.97438 * 9 8 7
12 12 N 1.31514 * 119.99906 * 0.02562 * 11 9 8
13 13 Si 1.86803 * 120.00250 * 179.97438 * 11 9 8
14 14 H 1.48509 * 109.47084 * 60.00131 * 13 11 9
15 15 H 1.48497 * 109.47252 * 179.97438 * 13 11 9
16 16 H 1.48500 * 109.47188 * 300.00155 * 13 11 9
17 17 C 1.48536 * 105.82189 * 334.66788 * 5 4 2
18 18 C 1.54591 * 110.30785 * 122.19976 * 2 1 3
19 19 H 1.08990 * 110.72764 * 22.51580 * 18 2 1
20 20 C 1.52997 * 110.72326 * 259.23003 * 18 2 1
21 21 O 1.42899 * 109.47339 * 180.02562 * 20 18 2
22 22 H 1.09004 * 109.47575 * 180.62896 * 1 2 3
23 23 H 1.09002 * 109.47585 * 300.63435 * 1 2 3
24 24 H 1.09007 * 109.47646 * 60.63372 * 1 2 3
25 25 H 1.08998 * 109.91739 * 122.95561 * 4 2 1
26 26 H 1.08995 * 109.91697 * 1.65745 * 4 2 1
27 27 H 1.08998 * 109.47498 * 67.39328 * 6 5 4
28 28 H 1.09001 * 109.47092 * 187.39784 * 6 5 4
29 29 H 1.08998 * 109.46902 * 300.00233 * 7 6 5
30 30 H 1.09001 * 109.46949 * 60.00236 * 7 6 5
31 31 H 1.09000 * 109.46683 * 299.99981 * 8 7 6
32 32 H 1.08994 * 109.47413 * 60.00023 * 8 7 6
33 33 H 0.97000 * 119.99972 * 180.02562 * 12 11 9
34 34 H 1.09004 * 110.66813 * 157.64005 * 17 5 4
35 35 H 1.09000 * 110.66721 * 280.77504 * 17 5 4
36 36 H 1.09004 * 109.47542 * 300.05174 * 20 18 2
37 37 H 1.09008 * 109.47371 * 60.04698 * 20 18 2
38 38 H 0.96707 * 113.99973 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9076 1.0225 0.0000
4 6 2.0644 -0.7671 -1.2237
5 7 2.8312 -1.9228 -0.7102
6 6 3.9751 -2.2246 -1.5811
7 6 3.4913 -2.3743 -3.0249
8 6 4.6825 -2.6892 -3.9319
9 6 4.2060 -2.8361 -5.3540
10 1 3.1583 -2.7172 -5.5875
11 6 5.1076 -3.1223 -6.3571
12 7 6.3834 -3.2676 -6.0727
13 14 4.5169 -3.3051 -8.1198
14 1 3.8785 -2.0391 -8.5617
15 1 5.6733 -3.6094 -9.0003
16 1 3.5294 -4.4113 -8.1987
17 6 3.2855 -1.5354 0.6499
18 6 2.0665 -0.7726 1.2268
19 1 1.3173 -1.4698 1.6015
20 6 2.5052 0.1959 2.3270
21 8 2.9961 -0.5451 3.4460
22 1 -0.3634 -1.0276 0.0113
23 1 -0.3634 0.5236 0.8842
24 1 -0.3634 0.5040 -0.8956
25 1 2.7161 -0.1207 -1.8116
26 1 1.2326 -1.1157 -1.8357
27 1 4.7000 -1.4126 -1.5233
28 1 4.4436 -3.1538 -1.2567
29 1 2.7664 -3.1863 -3.0828
30 1 3.0228 -1.4451 -3.3493
31 1 5.4077 -1.8775 -3.8740
32 1 5.1506 -3.6185 -3.6074
33 1 7.0178 -3.4686 -6.7785
34 1 3.5046 -2.4194 1.2487
35 1 4.1564 -0.8823 0.5931
36 1 3.2938 0.8451 1.9465
37 1 1.6542 0.8020 2.6382
38 1 3.2922 0.0061 4.1834
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000708688011.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:31:45
Heat of formation + Delta-G solvation = -94.476424 kcal
Electronic energy + Delta-G solvation = -15914.930760 eV
Core-core repulsion = 13369.264748 eV
Total energy + Delta-G solvation = -2545.666012 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.56031 -37.67109 -36.24736 -34.72166 -32.68703 -31.23254 -28.55141 -27.13155
-25.80148 -23.71786 -22.35673 -21.73971 -20.42079 -18.49490 -18.11684 -17.10986
-16.72707 -16.36101 -16.13663 -15.18899 -14.74977 -14.72829 -14.43851 -14.16812
-13.84925 -13.66088 -13.43286 -13.07508 -12.82267 -12.57607 -12.37702 -12.17443
-12.13048 -11.75432 -11.69580 -11.55913 -11.44830 -11.36554 -11.11935 -10.80960
-10.56103 -9.38251 -8.21010 -6.32713 1.39336 1.42996 1.50986 2.40417
2.99189 3.11870 3.29681 3.60742 3.71966 4.04183 4.18127 4.23702
4.31359 4.38491 4.49160 4.56989 4.61211 4.63405 4.66144 4.74859
4.87751 4.93033 4.99433 5.10788 5.11982 5.18526 5.19743 5.26668
5.45595 5.49300 5.70455 5.82756 5.98818 6.05059 6.25165 6.83374
6.94605 7.36592 8.90927
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.049294 B = 0.004610 C = 0.004308
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 567.879258 B = 6072.285532 C = 6497.927443
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.090 4.090
3 H 0.089 0.911
4 C 0.036 3.964
5 N -0.529 5.529
6 C 0.059 3.941
7 C -0.091 4.091
8 C 0.026 3.974
9 C -0.545 4.545
10 H 0.059 0.941
11 C -0.001 4.001
12 N -0.934 5.934
13 Si 0.967 3.033
14 H -0.266 1.266
15 H -0.281 1.281
16 H -0.267 1.267
17 C 0.043 3.957
18 C -0.083 4.083
19 H 0.083 0.917
20 C 0.089 3.911
21 O -0.593 6.593
22 H 0.051 0.949
23 H 0.072 0.928
24 H 0.062 0.938
25 H 0.037 0.963
26 H 0.076 0.924
27 H 0.026 0.974
28 H 0.064 0.936
29 H 0.050 0.950
30 H 0.053 0.947
31 H -0.010 1.010
32 H -0.009 1.009
33 H 0.264 0.736
34 H 0.074 0.926
35 H 0.040 0.960
36 H 0.050 0.950
37 H 0.069 0.931
38 H 0.397 0.603
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.165 9.573 16.501 21.616
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.109 4.109
3 H 0.107 0.893
4 C -0.092 4.092
5 N -0.253 5.253
6 C -0.069 4.069
7 C -0.129 4.129
8 C -0.012 4.012
9 C -0.583 4.583
10 H 0.078 0.922
11 C -0.198 4.198
12 N -0.574 5.574
13 Si 0.791 3.209
14 H -0.190 1.190
15 H -0.207 1.207
16 H -0.192 1.192
17 C -0.084 4.084
18 C -0.102 4.102
19 H 0.101 0.899
20 C 0.011 3.989
21 O -0.401 6.401
22 H 0.070 0.930
23 H 0.091 0.909
24 H 0.081 0.919
25 H 0.055 0.945
26 H 0.094 0.906
27 H 0.044 0.956
28 H 0.083 0.917
29 H 0.069 0.931
30 H 0.071 0.929
31 H 0.008 0.992
32 H 0.009 0.991
33 H 0.073 0.927
34 H 0.092 0.908
35 H 0.058 0.942
36 H 0.069 0.931
37 H 0.087 0.913
38 H 0.247 0.753
Dipole moment (debyes) X Y Z Total
from point charges -10.465 8.561 16.049 20.986
hybrid contribution 1.032 0.781 -0.801 1.522
sum -9.433 9.342 15.249 20.218
Atomic orbital electron populations
1.21800 0.92820 1.02122 1.02656 1.21978 0.97579 0.98995 0.92314
0.89306 1.23013 0.97781 0.91018 0.97388 1.64806 1.21069 1.36777
1.02612 1.22191 0.91723 0.99888 0.93142 1.21450 0.98272 1.00499
0.92699 1.18965 0.93578 0.94601 0.94021 1.21645 0.94444 1.48292
0.93908 0.92244 1.26008 0.94923 0.94742 1.04152 1.70096 1.03043
1.49634 1.34654 0.85472 0.77877 0.79163 0.78368 1.19039 1.20674
1.19163 1.23234 0.96702 0.99078 0.89411 1.22126 0.96808 0.97152
0.94118 0.89876 1.22172 0.98119 0.92592 0.86014 1.86461 1.85537
1.39148 1.28962 0.92957 0.90942 0.91906 0.94496 0.90602 0.95600
0.91713 0.93082 0.92866 0.99158 0.99089 0.92710 0.90793 0.94186
0.93147 0.91323 0.75318
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.32 8.89 71.98 0.64 -1.68 16
2 C -0.09 -1.84 3.16 -9.92 -0.03 -1.87 16
3 H 0.09 1.57 7.85 -2.38 -0.02 1.56 16
4 C 0.04 1.02 4.98 86.45 0.43 1.45 16
5 N -0.53 -17.16 5.40 -882.99 -4.77 -21.93 16
6 C 0.06 2.24 4.99 86.31 0.43 2.67 16
7 C -0.09 -4.04 4.90 30.60 0.15 -3.89 16
8 C 0.03 1.44 4.97 29.85 0.15 1.59 16
9 C -0.54 -32.13 9.11 25.60 0.23 -31.89 16
10 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16
11 C 0.00 -0.03 5.46 84.65 0.46 0.43 16
12 N -0.93 -58.17 13.29 21.45 0.28 -57.89 16
13 Si 0.97 45.08 29.54 68.60 2.03 47.10 16
14 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16
15 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16
16 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16
17 C 0.04 1.20 5.86 86.65 0.51 1.71 16
18 C -0.08 -1.79 2.89 -9.59 -0.03 -1.81 16
19 H 0.08 1.91 7.86 -2.39 -0.02 1.90 16
20 C 0.09 1.44 6.35 71.98 0.46 1.90 16
21 O -0.59 -10.49 13.50 -148.98 -2.01 -12.50 16
22 H 0.05 0.99 8.13 -2.38 -0.02 0.97 16
23 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16
24 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16
25 H 0.04 1.12 7.14 -2.39 -0.02 1.10 16
26 H 0.08 2.20 7.68 -2.39 -0.02 2.18 16
27 H 0.03 0.99 7.89 -2.39 -0.02 0.97 16
28 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16
29 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16
30 H 0.05 2.27 6.63 -2.39 -0.02 2.26 16
31 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16
32 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16
33 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16
34 H 0.07 2.13 8.14 -2.38 -0.02 2.12 16
35 H 0.04 1.11 7.73 -2.39 -0.02 1.09 16
36 H 0.05 0.77 8.10 -2.39 -0.02 0.75 16
37 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16
38 H 0.40 3.12 9.12 -74.05 -0.68 2.44 16
Total: -1.00 -68.67 303.93 -0.73 -69.41
By element:
Atomic # 1 Polarization: 6.89 SS G_CDS: 0.33 Total: 7.22 kcal
Atomic # 6 Polarization: -34.82 SS G_CDS: 3.40 Total: -31.42 kcal
Atomic # 7 Polarization: -75.33 SS G_CDS: -4.48 Total: -79.82 kcal
Atomic # 8 Polarization: -10.49 SS G_CDS: -2.01 Total: -12.50 kcal
Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal
Total: -68.67 -0.73 -69.41 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000708688011.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.069 kcal
(2) G-P(sol) polarization free energy of solvation -68.674 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.742 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.734 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.408 kcal
(6) G-S(sol) free energy of system = (1) + (5) -94.476 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds