Wall clock time and date at job start Mon Mar 30 2020 03:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 110.27088 * 2 1 4 4 C 1.53998 * 110.30670 * 237.91804 * 2 1 3 5 5 N 1.47900 * 107.05419 * 242.30729 * 4 2 1 6 6 C 1.46901 * 110.99996 * 214.15887 * 5 4 2 7 7 C 1.53006 * 109.46970 * 307.39460 * 6 5 4 8 8 C 1.52998 * 109.47046 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47013 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00053 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00239 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99906 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00250 * 179.97438 * 11 9 8 14 14 H 1.48509 * 109.47084 * 60.00131 * 13 11 9 15 15 H 1.48497 * 109.47252 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47188 * 300.00155 * 13 11 9 17 17 C 1.48536 * 105.82189 * 334.66788 * 5 4 2 18 18 C 1.54591 * 110.30785 * 122.19976 * 2 1 3 19 19 H 1.08990 * 110.72764 * 22.51580 * 18 2 1 20 20 C 1.52997 * 110.72326 * 259.23003 * 18 2 1 21 21 O 1.42899 * 109.47339 * 180.02562 * 20 18 2 22 22 H 1.09004 * 109.47575 * 180.62896 * 1 2 3 23 23 H 1.09002 * 109.47585 * 300.63435 * 1 2 3 24 24 H 1.09007 * 109.47646 * 60.63372 * 1 2 3 25 25 H 1.08998 * 109.91739 * 122.95561 * 4 2 1 26 26 H 1.08995 * 109.91697 * 1.65745 * 4 2 1 27 27 H 1.08998 * 109.47498 * 67.39328 * 6 5 4 28 28 H 1.09001 * 109.47092 * 187.39784 * 6 5 4 29 29 H 1.08998 * 109.46902 * 300.00233 * 7 6 5 30 30 H 1.09001 * 109.46949 * 60.00236 * 7 6 5 31 31 H 1.09000 * 109.46683 * 299.99981 * 8 7 6 32 32 H 1.08994 * 109.47413 * 60.00023 * 8 7 6 33 33 H 0.97000 * 119.99972 * 180.02562 * 12 11 9 34 34 H 1.09004 * 110.66813 * 157.64005 * 17 5 4 35 35 H 1.09000 * 110.66721 * 280.77504 * 17 5 4 36 36 H 1.09004 * 109.47542 * 300.05174 * 20 18 2 37 37 H 1.09008 * 109.47371 * 60.04698 * 20 18 2 38 38 H 0.96707 * 113.99973 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0644 -0.7671 -1.2237 5 7 2.8312 -1.9228 -0.7102 6 6 3.9751 -2.2246 -1.5811 7 6 3.4913 -2.3743 -3.0249 8 6 4.6825 -2.6892 -3.9319 9 6 4.2060 -2.8361 -5.3540 10 1 3.1583 -2.7172 -5.5875 11 6 5.1076 -3.1223 -6.3571 12 7 6.3834 -3.2676 -6.0727 13 14 4.5169 -3.3051 -8.1198 14 1 3.8785 -2.0391 -8.5617 15 1 5.6733 -3.6094 -9.0003 16 1 3.5294 -4.4113 -8.1987 17 6 3.2855 -1.5354 0.6499 18 6 2.0665 -0.7726 1.2268 19 1 1.3173 -1.4698 1.6015 20 6 2.5052 0.1959 2.3270 21 8 2.9961 -0.5451 3.4460 22 1 -0.3634 -1.0276 0.0113 23 1 -0.3634 0.5236 0.8842 24 1 -0.3634 0.5040 -0.8956 25 1 2.7161 -0.1207 -1.8116 26 1 1.2326 -1.1157 -1.8357 27 1 4.7000 -1.4126 -1.5233 28 1 4.4436 -3.1538 -1.2567 29 1 2.7664 -3.1863 -3.0828 30 1 3.0228 -1.4451 -3.3493 31 1 5.4077 -1.8775 -3.8740 32 1 5.1506 -3.6185 -3.6074 33 1 7.0178 -3.4686 -6.7785 34 1 3.5046 -2.4194 1.2487 35 1 4.1564 -0.8823 0.5931 36 1 3.2938 0.8451 1.9465 37 1 1.6542 0.8020 2.6382 38 1 3.2922 0.0061 4.1834 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708688011.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:45 Heat of formation + Delta-G solvation = -94.476424 kcal Electronic energy + Delta-G solvation = -15914.930760 eV Core-core repulsion = 13369.264748 eV Total energy + Delta-G solvation = -2545.666012 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.56031 -37.67109 -36.24736 -34.72166 -32.68703 -31.23254 -28.55141 -27.13155 -25.80148 -23.71786 -22.35673 -21.73971 -20.42079 -18.49490 -18.11684 -17.10986 -16.72707 -16.36101 -16.13663 -15.18899 -14.74977 -14.72829 -14.43851 -14.16812 -13.84925 -13.66088 -13.43286 -13.07508 -12.82267 -12.57607 -12.37702 -12.17443 -12.13048 -11.75432 -11.69580 -11.55913 -11.44830 -11.36554 -11.11935 -10.80960 -10.56103 -9.38251 -8.21010 -6.32713 1.39336 1.42996 1.50986 2.40417 2.99189 3.11870 3.29681 3.60742 3.71966 4.04183 4.18127 4.23702 4.31359 4.38491 4.49160 4.56989 4.61211 4.63405 4.66144 4.74859 4.87751 4.93033 4.99433 5.10788 5.11982 5.18526 5.19743 5.26668 5.45595 5.49300 5.70455 5.82756 5.98818 6.05059 6.25165 6.83374 6.94605 7.36592 8.90927 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.049294 B = 0.004610 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.879258 B = 6072.285532 C = 6497.927443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 H 0.089 0.911 4 C 0.036 3.964 5 N -0.529 5.529 6 C 0.059 3.941 7 C -0.091 4.091 8 C 0.026 3.974 9 C -0.545 4.545 10 H 0.059 0.941 11 C -0.001 4.001 12 N -0.934 5.934 13 Si 0.967 3.033 14 H -0.266 1.266 15 H -0.281 1.281 16 H -0.267 1.267 17 C 0.043 3.957 18 C -0.083 4.083 19 H 0.083 0.917 20 C 0.089 3.911 21 O -0.593 6.593 22 H 0.051 0.949 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.037 0.963 26 H 0.076 0.924 27 H 0.026 0.974 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.053 0.947 31 H -0.010 1.010 32 H -0.009 1.009 33 H 0.264 0.736 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.165 9.573 16.501 21.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.109 4.109 3 H 0.107 0.893 4 C -0.092 4.092 5 N -0.253 5.253 6 C -0.069 4.069 7 C -0.129 4.129 8 C -0.012 4.012 9 C -0.583 4.583 10 H 0.078 0.922 11 C -0.198 4.198 12 N -0.574 5.574 13 Si 0.791 3.209 14 H -0.190 1.190 15 H -0.207 1.207 16 H -0.192 1.192 17 C -0.084 4.084 18 C -0.102 4.102 19 H 0.101 0.899 20 C 0.011 3.989 21 O -0.401 6.401 22 H 0.070 0.930 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.055 0.945 26 H 0.094 0.906 27 H 0.044 0.956 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.008 0.992 32 H 0.009 0.991 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -10.465 8.561 16.049 20.986 hybrid contribution 1.032 0.781 -0.801 1.522 sum -9.433 9.342 15.249 20.218 Atomic orbital electron populations 1.21800 0.92820 1.02122 1.02656 1.21978 0.97579 0.98995 0.92314 0.89306 1.23013 0.97781 0.91018 0.97388 1.64806 1.21069 1.36777 1.02612 1.22191 0.91723 0.99888 0.93142 1.21450 0.98272 1.00499 0.92699 1.18965 0.93578 0.94601 0.94021 1.21645 0.94444 1.48292 0.93908 0.92244 1.26008 0.94923 0.94742 1.04152 1.70096 1.03043 1.49634 1.34654 0.85472 0.77877 0.79163 0.78368 1.19039 1.20674 1.19163 1.23234 0.96702 0.99078 0.89411 1.22126 0.96808 0.97152 0.94118 0.89876 1.22172 0.98119 0.92592 0.86014 1.86461 1.85537 1.39148 1.28962 0.92957 0.90942 0.91906 0.94496 0.90602 0.95600 0.91713 0.93082 0.92866 0.99158 0.99089 0.92710 0.90793 0.94186 0.93147 0.91323 0.75318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.89 71.98 0.64 -1.68 16 2 C -0.09 -1.84 3.16 -9.92 -0.03 -1.87 16 3 H 0.09 1.57 7.85 -2.38 -0.02 1.56 16 4 C 0.04 1.02 4.98 86.45 0.43 1.45 16 5 N -0.53 -17.16 5.40 -882.99 -4.77 -21.93 16 6 C 0.06 2.24 4.99 86.31 0.43 2.67 16 7 C -0.09 -4.04 4.90 30.60 0.15 -3.89 16 8 C 0.03 1.44 4.97 29.85 0.15 1.59 16 9 C -0.54 -32.13 9.11 25.60 0.23 -31.89 16 10 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 11 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 12 N -0.93 -58.17 13.29 21.45 0.28 -57.89 16 13 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 14 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 15 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 17 C 0.04 1.20 5.86 86.65 0.51 1.71 16 18 C -0.08 -1.79 2.89 -9.59 -0.03 -1.81 16 19 H 0.08 1.91 7.86 -2.39 -0.02 1.90 16 20 C 0.09 1.44 6.35 71.98 0.46 1.90 16 21 O -0.59 -10.49 13.50 -148.98 -2.01 -12.50 16 22 H 0.05 0.99 8.13 -2.38 -0.02 0.97 16 23 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.04 1.12 7.14 -2.39 -0.02 1.10 16 26 H 0.08 2.20 7.68 -2.39 -0.02 2.18 16 27 H 0.03 0.99 7.89 -2.39 -0.02 0.97 16 28 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.05 2.27 6.63 -2.39 -0.02 2.26 16 31 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 32 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 33 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 34 H 0.07 2.13 8.14 -2.38 -0.02 2.12 16 35 H 0.04 1.11 7.73 -2.39 -0.02 1.09 16 36 H 0.05 0.77 8.10 -2.39 -0.02 0.75 16 37 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.40 3.12 9.12 -74.05 -0.68 2.44 16 Total: -1.00 -68.67 303.93 -0.73 -69.41 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 0.33 Total: 7.22 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 3.40 Total: -31.42 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -4.48 Total: -79.82 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -2.01 Total: -12.50 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -68.67 -0.73 -69.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708688011.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.069 kcal (2) G-P(sol) polarization free energy of solvation -68.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds