Wall clock time and date at job start Mon Mar 30 2020 03:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47069 * 2 1 4 4 C 1.52995 * 109.47435 * 240.00196 * 2 1 3 5 5 C 1.50696 * 109.47274 * 175.00005 * 4 2 1 6 6 H 1.08001 * 120.00201 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99951 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00080 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99907 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47248 * 90.00483 * 9 7 5 11 11 H 1.48506 * 109.46949 * 210.00030 * 9 7 5 12 12 H 1.48501 * 109.47253 * 329.99971 * 9 7 5 13 13 O 1.42894 * 109.47215 * 119.99679 * 2 1 3 14 14 C 1.42906 * 114.00467 * 263.43387 * 13 2 1 15 15 H 1.08998 * 109.52983 * 330.78008 * 14 13 2 16 16 C 1.53040 * 109.50314 * 90.87522 * 14 13 2 17 17 N 1.46843 * 109.52228 * 60.76524 * 16 14 13 18 18 C 1.46840 * 111.19991 * 61.74296 * 17 16 14 19 19 C 1.53037 * 109.52338 * 298.25405 * 18 17 16 20 20 C 1.53112 * 109.50548 * 210.68104 * 14 13 2 21 21 H 1.08993 * 109.52723 * 177.80925 * 20 14 13 22 22 C 1.53002 * 109.52355 * 57.61190 * 20 14 13 23 23 H 1.08996 * 109.47112 * 305.75464 * 1 2 3 24 24 H 1.09001 * 109.46948 * 65.75162 * 1 2 3 25 25 H 1.08997 * 109.46848 * 185.75423 * 1 2 3 26 26 H 1.09002 * 109.46680 * 294.99905 * 4 2 1 27 27 H 1.09007 * 109.47185 * 54.99230 * 4 2 1 28 28 H 0.96992 * 119.99668 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.45822 * 300.74672 * 16 14 13 30 30 H 1.09000 * 109.45711 * 180.78075 * 16 14 13 31 31 H 1.00900 * 111.00265 * 297.64016 * 17 16 14 32 32 H 1.08996 * 109.46467 * 58.27233 * 18 17 16 33 33 H 1.09004 * 109.46369 * 178.25702 * 18 17 16 34 34 H 1.08994 * 109.50457 * 179.12082 * 19 18 17 35 35 H 1.09006 * 109.50587 * 299.20171 * 19 18 17 36 36 H 1.08991 * 109.47652 * 300.31927 * 22 20 14 37 37 H 1.09003 * 109.46791 * 60.32287 * 22 20 14 38 38 H 1.09007 * 109.47057 * 180.31698 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3126 6 1 4.0790 -0.0854 -0.5395 7 6 4.2305 -1.1934 -2.3577 8 7 5.5412 -1.1002 -2.4134 9 14 3.3017 -2.1097 -3.6946 10 1 2.9401 -1.1655 -4.7822 11 1 4.1607 -3.1902 -4.2424 12 1 2.0661 -2.7020 -3.1219 13 8 2.0063 -0.6735 1.1668 14 6 2.3409 0.2005 2.2467 15 1 2.6622 1.1635 1.8500 16 6 1.1152 0.3997 3.1413 17 7 0.6947 -0.8947 3.6928 18 6 1.7493 -1.4841 4.5274 19 6 2.9938 -1.7396 3.6742 20 6 3.4738 -0.4163 3.0715 21 1 3.7557 0.2675 3.8721 22 6 4.6818 -0.6743 2.1685 23 1 -0.3633 0.6005 0.8339 24 1 -0.3633 0.4221 -0.9370 25 1 -0.3633 -1.0225 0.1030 26 1 1.7517 -1.7714 -1.2055 27 1 1.6053 -0.2617 -2.1370 28 1 6.0255 -1.5069 -3.1487 29 1 0.3020 0.8256 2.5535 30 1 1.3673 1.0774 3.9569 31 1 0.4186 -1.5284 2.9578 32 1 1.9983 -0.7977 5.3366 33 1 1.3967 -2.4267 4.9462 34 1 3.7816 -2.1627 4.2974 35 1 2.7491 -2.4374 2.8733 36 1 4.3974 -1.3560 1.3671 37 1 5.0228 0.2682 1.7400 38 1 5.4858 -1.1186 2.7553 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709972830.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:53 Heat of formation + Delta-G solvation = -67.915992 kcal Electronic energy + Delta-G solvation = -17142.456230 eV Core-core repulsion = 14597.941965 eV Total energy + Delta-G solvation = -2544.514265 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.38778 -36.43846 -33.18707 -32.81318 -31.31092 -29.63730 -27.88304 -26.42893 -22.92813 -22.52162 -21.98426 -20.09221 -19.57148 -16.69125 -16.19470 -15.53167 -14.88281 -14.66308 -14.19988 -13.94016 -13.51920 -13.07303 -12.93195 -12.42628 -12.15800 -12.02396 -11.72702 -11.62896 -11.52522 -11.26993 -10.95449 -10.79679 -10.66219 -10.63937 -10.29044 -9.85899 -9.73351 -9.61511 -9.12645 -8.91906 -8.49613 -7.95825 -5.99193 -3.94967 3.31810 3.40107 3.43970 4.27538 4.48794 4.62534 5.03007 5.11283 5.31154 5.32770 5.36367 5.55537 5.63463 5.70761 5.79619 5.82880 5.88531 6.00653 6.05091 6.11738 6.19429 6.27459 6.29717 6.48850 6.51960 6.61323 6.68959 6.75392 7.09526 7.19777 7.22764 7.29548 7.60344 7.81324 8.12082 8.59432 9.07208 9.63376 11.14067 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031447 B = 0.008716 C = 0.007549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.179054 B = 3211.579145 C = 3708.263234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.100 3.900 3 H 0.051 0.949 4 C -0.015 4.015 5 C -0.505 4.505 6 H 0.076 0.924 7 C 0.065 3.935 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 O -0.353 6.353 14 C 0.058 3.942 15 H 0.058 0.942 16 C 0.034 3.966 17 N -0.681 5.681 18 C 0.057 3.943 19 C -0.148 4.148 20 C -0.082 4.082 21 H 0.066 0.934 22 C -0.142 4.142 23 H 0.046 0.954 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.023 0.977 27 H 0.021 0.979 28 H 0.261 0.739 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.347 0.653 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.622 1.520 10.776 13.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.043 3.957 3 H 0.069 0.931 4 C -0.053 4.053 5 C -0.543 4.543 6 H 0.095 0.905 7 C -0.135 4.135 8 N -0.544 5.544 9 Si 0.703 3.297 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 O -0.272 6.272 14 C -0.002 4.002 15 H 0.076 0.924 16 C -0.096 4.096 17 N -0.310 5.310 18 C -0.073 4.073 19 C -0.187 4.187 20 C -0.101 4.101 21 H 0.084 0.916 22 C -0.199 4.199 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.039 0.961 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.166 0.834 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.800 1.543 11.217 13.749 hybrid contribution 0.357 -0.456 -1.560 1.664 sum -7.443 1.087 9.657 12.241 Atomic orbital electron populations 1.22441 0.97952 1.01789 1.00928 1.22175 0.90858 0.95917 0.86774 0.93088 1.19752 0.97879 0.96296 0.91324 1.21063 0.89511 1.34543 1.09176 0.90549 1.24994 0.94701 0.96001 0.97852 1.69908 1.06433 1.45794 1.32276 0.86862 0.80336 0.80059 0.82492 1.20518 1.21518 1.19100 1.87940 1.84581 1.32649 1.22023 1.22799 0.94519 0.93910 0.89012 0.92411 1.22609 0.97061 0.92383 0.97554 1.60740 1.37928 1.05868 1.26463 1.21995 0.90308 0.99201 0.95757 1.22240 0.98346 0.98107 0.99998 1.21186 0.95279 0.96685 0.96906 0.91572 1.21772 0.95457 1.02842 0.99857 0.93483 0.92346 0.92413 0.95856 0.96095 0.92945 0.90705 0.91121 0.83433 0.91693 0.91279 0.92237 0.90744 0.89720 0.93056 0.94057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 9.40 37.16 0.35 -2.43 16 2 C 0.10 1.96 2.69 -26.73 -0.07 1.89 16 3 H 0.05 1.01 7.26 -51.92 -0.38 0.63 16 4 C -0.02 -0.36 3.75 -27.89 -0.10 -0.46 16 5 C -0.50 -14.06 9.43 -34.44 -0.32 -14.39 16 6 H 0.08 2.27 7.43 -52.49 -0.39 1.88 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.70 13.96 55.43 0.77 -26.92 16 9 Si 0.87 21.80 27.47 -169.99 -4.67 17.13 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 13 O -0.35 -6.76 7.55 -35.23 -0.27 -7.03 16 14 C 0.06 0.94 2.41 -26.65 -0.06 0.87 16 15 H 0.06 0.97 7.31 -51.93 -0.38 0.59 16 16 C 0.03 0.47 6.14 -3.83 -0.02 0.45 16 17 N -0.68 -9.30 6.86 -113.82 -0.78 -10.08 16 18 C 0.06 0.72 6.55 -3.84 -0.03 0.69 16 19 C -0.15 -2.10 5.21 -26.65 -0.14 -2.24 16 20 C -0.08 -1.27 2.62 -90.50 -0.24 -1.51 16 21 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 22 C -0.14 -2.61 8.79 37.16 0.33 -2.29 16 23 H 0.05 0.66 6.14 -51.93 -0.32 0.34 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.02 0.57 7.20 -51.93 -0.37 0.20 16 27 H 0.02 0.49 7.57 -51.92 -0.39 0.09 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.07 1.01 6.07 -51.93 -0.32 0.70 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.35 5.04 8.38 -39.29 -0.33 4.71 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.23 7.80 -51.93 -0.41 0.82 16 36 H 0.08 1.89 7.31 -51.93 -0.38 1.51 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 293.13 15.07 4.42 4.42 Total: -1.00 -29.34 293.13 -7.57 -36.91 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.63 Total: 3.21 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -0.41 Total: -17.63 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: -0.01 Total: -37.00 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.27 Total: -7.03 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.34 -7.57 -36.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709972830.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.009 kcal (2) G-P(sol) polarization free energy of solvation -29.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds