Wall clock time and date at job start Mon Mar 30 2020 03:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47069 * 2 1 4 4 C 1.52995 * 109.47435 * 240.00196 * 2 1 3 5 5 C 1.50696 * 109.47274 * 175.00005 * 4 2 1 6 6 H 1.08001 * 120.00201 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99951 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00080 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99907 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47248 * 90.00483 * 9 7 5 11 11 H 1.48506 * 109.46949 * 210.00030 * 9 7 5 12 12 H 1.48501 * 109.47253 * 329.99971 * 9 7 5 13 13 O 1.42894 * 109.47215 * 119.99679 * 2 1 3 14 14 C 1.42906 * 114.00467 * 263.43387 * 13 2 1 15 15 H 1.08998 * 109.52983 * 330.78008 * 14 13 2 16 16 C 1.53040 * 109.50314 * 90.87522 * 14 13 2 17 17 N 1.46843 * 109.52228 * 60.76524 * 16 14 13 18 18 C 1.46840 * 111.19991 * 61.74296 * 17 16 14 19 19 C 1.53037 * 109.52338 * 298.25405 * 18 17 16 20 20 C 1.53112 * 109.50548 * 210.68104 * 14 13 2 21 21 H 1.08993 * 109.52723 * 177.80925 * 20 14 13 22 22 C 1.53002 * 109.52355 * 57.61190 * 20 14 13 23 23 H 1.08996 * 109.47112 * 305.75464 * 1 2 3 24 24 H 1.09001 * 109.46948 * 65.75162 * 1 2 3 25 25 H 1.08997 * 109.46848 * 185.75423 * 1 2 3 26 26 H 1.09002 * 109.46680 * 294.99905 * 4 2 1 27 27 H 1.09007 * 109.47185 * 54.99230 * 4 2 1 28 28 H 0.96992 * 119.99668 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.45822 * 300.74672 * 16 14 13 30 30 H 1.09000 * 109.45711 * 180.78075 * 16 14 13 31 31 H 1.00900 * 111.00265 * 297.64016 * 17 16 14 32 32 H 1.08996 * 109.46467 * 58.27233 * 18 17 16 33 33 H 1.09004 * 109.46369 * 178.25702 * 18 17 16 34 34 H 1.08994 * 109.50457 * 179.12082 * 19 18 17 35 35 H 1.09006 * 109.50587 * 299.20171 * 19 18 17 36 36 H 1.08991 * 109.47652 * 300.31927 * 22 20 14 37 37 H 1.09003 * 109.46791 * 60.32287 * 22 20 14 38 38 H 1.09007 * 109.47057 * 180.31698 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3126 6 1 4.0790 -0.0854 -0.5395 7 6 4.2305 -1.1934 -2.3577 8 7 5.5412 -1.1002 -2.4134 9 14 3.3017 -2.1097 -3.6946 10 1 2.9401 -1.1655 -4.7822 11 1 4.1607 -3.1902 -4.2424 12 1 2.0661 -2.7020 -3.1219 13 8 2.0063 -0.6735 1.1668 14 6 2.3409 0.2005 2.2467 15 1 2.6622 1.1635 1.8500 16 6 1.1152 0.3997 3.1413 17 7 0.6947 -0.8947 3.6928 18 6 1.7493 -1.4841 4.5274 19 6 2.9938 -1.7396 3.6742 20 6 3.4738 -0.4163 3.0715 21 1 3.7557 0.2675 3.8721 22 6 4.6818 -0.6743 2.1685 23 1 -0.3633 0.6005 0.8339 24 1 -0.3633 0.4221 -0.9370 25 1 -0.3633 -1.0225 0.1030 26 1 1.7517 -1.7714 -1.2055 27 1 1.6053 -0.2617 -2.1370 28 1 6.0255 -1.5069 -3.1487 29 1 0.3020 0.8256 2.5535 30 1 1.3673 1.0774 3.9569 31 1 0.4186 -1.5284 2.9578 32 1 1.9983 -0.7977 5.3366 33 1 1.3967 -2.4267 4.9462 34 1 3.7816 -2.1627 4.2974 35 1 2.7491 -2.4374 2.8733 36 1 4.3974 -1.3560 1.3671 37 1 5.0228 0.2682 1.7400 38 1 5.4858 -1.1186 2.7553 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709972830.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:52 Heat of formation + Delta-G solvation = -87.893610 kcal Electronic energy + Delta-G solvation = -17143.322524 eV Core-core repulsion = 14597.941965 eV Total energy + Delta-G solvation = -2545.380560 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.67065 -37.83900 -35.03758 -34.25273 -33.01542 -30.85135 -29.66834 -27.78217 -24.79057 -23.69679 -23.18721 -21.76770 -20.85016 -18.84754 -17.53306 -16.87773 -16.38999 -16.13259 -15.71002 -15.27044 -14.86441 -14.69511 -14.39334 -14.15302 -13.62778 -13.51112 -13.30388 -13.15661 -12.79675 -12.65104 -12.50441 -12.31827 -12.19379 -12.06209 -11.84538 -11.59750 -11.37038 -11.13665 -10.94978 -10.72396 -10.40977 -9.11666 -8.22952 -6.23196 1.33633 1.36533 1.47479 2.38150 2.89326 3.14482 3.51079 3.79861 3.92995 4.07789 4.13826 4.20588 4.40674 4.45104 4.54338 4.57691 4.60618 4.72823 4.81702 4.86062 4.95451 4.97831 5.05012 5.09392 5.12068 5.19448 5.26012 5.29519 5.40127 5.46473 5.62613 5.70926 6.13064 6.35558 6.49047 6.66916 6.83585 7.38238 8.93373 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031447 B = 0.008716 C = 0.007549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.179054 B = 3211.579145 C = 3708.263234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.102 3.898 3 H 0.042 0.958 4 C -0.015 4.015 5 C -0.505 4.505 6 H 0.040 0.960 7 C 0.002 3.998 8 N -0.952 5.952 9 Si 0.942 3.058 10 H -0.266 1.266 11 H -0.289 1.289 12 H -0.251 1.251 13 O -0.372 6.372 14 C 0.053 3.947 15 H 0.045 0.955 16 C 0.044 3.956 17 N -0.679 5.679 18 C 0.062 3.938 19 C -0.141 4.141 20 C -0.080 4.080 21 H 0.092 0.908 22 C -0.132 4.132 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.016 0.984 27 H 0.031 0.969 28 H 0.262 0.738 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.342 0.658 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.037 0.963 37 H 0.030 0.970 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.900 1.492 11.877 15.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.060 0.940 4 C -0.053 4.053 5 C -0.543 4.543 6 H 0.058 0.942 7 C -0.194 4.194 8 N -0.594 5.594 9 Si 0.767 3.233 10 H -0.191 1.191 11 H -0.215 1.215 12 H -0.175 1.175 13 O -0.291 6.291 14 C -0.007 4.007 15 H 0.063 0.937 16 C -0.086 4.086 17 N -0.307 5.307 18 C -0.068 4.068 19 C -0.181 4.181 20 C -0.099 4.099 21 H 0.110 0.890 22 C -0.190 4.190 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.035 0.965 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.160 0.840 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.101 1.525 12.335 16.016 hybrid contribution 1.172 -0.410 -1.831 2.212 sum -8.929 1.115 10.504 13.831 Atomic orbital electron populations 1.22304 0.94469 1.02540 1.02561 1.22035 0.93413 0.94543 0.85537 0.94017 1.19738 0.94914 0.96503 0.94128 1.21348 0.91918 1.33215 1.07801 0.94160 1.25915 0.95529 0.97280 1.00698 1.70069 1.08330 1.47543 1.33455 0.85778 0.79295 0.78796 0.79462 1.19147 1.21529 1.17512 1.87902 1.85001 1.33671 1.22535 1.22994 0.96173 0.92837 0.88724 0.93703 1.22555 0.95627 0.92908 0.97526 1.60793 1.38061 1.05729 1.26147 1.22050 0.88906 1.00401 0.95425 1.22179 0.99876 0.96493 0.99518 1.21231 0.93649 0.98211 0.96794 0.88973 1.21632 0.97584 1.00560 0.99218 0.91196 0.91246 0.92211 0.96549 0.95072 0.92965 0.90181 0.89219 0.84046 0.89998 0.89783 0.90853 0.93619 0.94395 0.95101 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.76 9.40 71.98 0.68 -4.09 16 2 C 0.10 3.97 2.69 30.59 0.08 4.05 16 3 H 0.04 1.67 7.26 -2.38 -0.02 1.65 16 4 C -0.02 -0.73 3.75 29.84 0.11 -0.62 16 5 C -0.50 -29.07 9.43 25.60 0.24 -28.83 16 6 H 0.04 2.54 7.43 -2.91 -0.02 2.52 16 7 C 0.00 0.09 5.47 84.65 0.46 0.55 16 8 N -0.95 -60.48 13.96 21.45 0.30 -60.18 16 9 Si 0.94 45.24 27.47 68.60 1.88 47.13 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 12 H -0.25 -11.36 6.54 99.48 0.65 -10.71 16 13 O -0.37 -14.29 7.55 -148.98 -1.13 -15.42 16 14 C 0.05 1.67 2.41 30.64 0.07 1.74 16 15 H 0.04 1.52 7.31 -2.39 -0.02 1.50 16 16 C 0.04 1.09 6.14 86.33 0.53 1.62 16 17 N -0.68 -16.62 6.86 -514.03 -3.53 -20.14 16 18 C 0.06 1.37 6.55 86.33 0.57 1.93 16 19 C -0.14 -3.83 5.21 30.65 0.16 -3.67 16 20 C -0.08 -2.44 2.62 -10.71 -0.03 -2.47 16 21 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 22 C -0.13 -5.09 8.79 71.98 0.63 -4.46 16 23 H 0.07 1.75 6.14 -2.39 -0.01 1.73 16 24 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.02 0.79 7.20 -2.39 -0.02 0.77 16 27 H 0.03 1.41 7.57 -2.38 -0.02 1.39 16 28 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 29 H 0.08 1.92 6.07 -2.39 -0.01 1.90 16 30 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.34 9.16 8.38 -89.69 -0.75 8.41 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.04 1.50 7.80 -2.38 -0.02 1.48 16 36 H 0.04 1.79 7.31 -2.39 -0.02 1.77 16 37 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -65.44 293.13 1.25 -64.19 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.21 Total: 18.66 kcal Atomic # 6 Polarization: -37.74 SS G_CDS: 3.51 Total: -34.23 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -3.23 Total: -80.32 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -1.13 Total: -15.42 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.88 Total: 47.13 kcal Total: -65.44 1.25 -64.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709972830.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.706 kcal (2) G-P(sol) polarization free energy of solvation -65.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds