Wall clock time and date at job start Mon Mar 30 2020 02:50:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08997 * 109.46498 * 2 1
4 4 C 1.53002 * 109.46981 * 240.00485 * 2 1 3
5 5 C 1.50697 * 109.46884 * 171.46804 * 4 2 1
6 6 H 1.07992 * 120.00626 * 354.13249 * 5 4 2
7 7 C 1.37882 * 119.99483 * 174.13062 * 5 4 2
8 8 N 1.31514 * 120.00587 * 359.97438 * 7 5 4
9 9 Si 1.86800 * 119.99628 * 180.02562 * 7 5 4
10 10 H 1.48502 * 109.47164 * 359.97438 * 9 7 5
11 11 H 1.48501 * 109.47345 * 119.99966 * 9 7 5
12 12 H 1.48508 * 109.47094 * 239.99795 * 9 7 5
13 13 N 1.46899 * 109.47468 * 120.00323 * 2 1 3
14 14 C 1.46843 * 111.00053 * 67.57028 * 13 2 1
15 15 C 1.53039 * 109.52273 * 185.84177 * 14 13 2
16 16 H 1.09003 * 109.50391 * 180.87756 * 15 14 13
17 17 O 1.42899 * 109.50612 * 60.75859 * 15 14 13
18 18 C 1.53114 * 109.27493 * 300.81940 * 15 14 13
19 19 C 1.53114 * 109.16400 * 57.65419 * 18 15 14
20 20 C 1.46842 * 110.99790 * 191.78045 * 13 2 1
21 21 H 1.09002 * 109.45672 * 294.17020 * 20 13 2
22 22 C 1.53001 * 109.46447 * 54.14261 * 20 13 2
23 23 H 1.09005 * 109.47023 * 304.42467 * 1 2 3
24 24 H 1.08997 * 109.47655 * 64.42994 * 1 2 3
25 25 H 1.09010 * 109.46997 * 184.43558 * 1 2 3
26 26 H 1.08999 * 109.46850 * 291.46748 * 4 2 1
27 27 H 1.09000 * 109.47194 * 51.46562 * 4 2 1
28 28 H 0.96996 * 120.00681 * 179.97438 * 8 7 5
29 29 H 1.09005 * 109.46164 * 305.85589 * 14 13 2
30 30 H 1.08998 * 109.46619 * 65.83390 * 14 13 2
31 31 H 0.96701 * 114.00088 * 180.19713 * 17 15 14
32 32 H 1.09000 * 109.52628 * 297.74541 * 18 15 14
33 33 H 1.09010 * 109.52247 * 177.56226 * 18 15 14
34 34 H 1.09007 * 109.50300 * 62.28570 * 19 18 15
35 35 H 1.08999 * 109.50680 * 182.35925 * 19 18 15
36 36 H 1.09007 * 109.46765 * 172.96787 * 22 20 13
37 37 H 1.08995 * 109.47275 * 292.96670 * 22 20 13
38 38 H 1.09000 * 109.46848 * 52.97092 * 22 20 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 3.5322 -0.5412 -1.3592
6 1 4.0503 0.1071 -0.6683
7 6 4.2359 -1.2045 -2.3421
8 7 3.6051 -1.9945 -3.1832
9 14 6.0856 -0.9820 -2.4779
10 1 6.5509 -0.0486 -1.4207
11 1 6.7561 -2.2962 -2.3087
12 1 6.4204 -0.4238 -3.8127
13 7 2.0198 -0.6925 1.1994
14 6 1.7021 -2.1252 1.1464
15 6 2.0951 -2.7855 2.4699
16 1 1.8735 -3.8518 2.4245
17 8 1.3570 -2.1891 3.5383
18 6 3.5940 -2.5845 2.7095
19 6 3.9060 -1.0855 2.7119
20 6 3.4605 -0.4745 1.3815
21 1 4.0054 -0.9471 0.5642
22 6 3.7521 1.0275 1.3872
23 1 -0.3633 0.5810 0.8477
24 1 -0.3634 0.4435 -0.9270
25 1 -0.3633 -1.0247 0.0795
26 1 1.8065 -1.7833 -1.1764
27 1 1.5575 -0.3029 -2.1327
28 1 4.1001 -2.4608 -3.8749
29 1 0.6326 -2.2541 0.9797
30 1 2.2554 -2.5900 0.3304
31 1 1.5583 -2.5579 4.4093
32 1 4.1586 -3.0729 1.9153
33 1 3.8700 -3.0157 3.6719
34 1 3.3715 -0.6038 3.5307
35 1 4.9782 -0.9372 2.8403
36 1 4.7978 1.1935 1.6461
37 1 3.5527 1.4401 0.3982
38 1 3.1135 1.5187 2.1214
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000709994002.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:50:54
Heat of formation + Delta-G solvation = -48.894761 kcal
Electronic energy + Delta-G solvation = -17582.145793 eV
Core-core repulsion = 15038.456350 eV
Total energy + Delta-G solvation = -2543.689443 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-39.31612 -36.33805 -33.65048 -32.46176 -31.03514 -29.38605 -27.40719 -26.10001
-23.76834 -22.84641 -20.92021 -19.74178 -18.26995 -16.67055 -16.16921 -15.69341
-14.78730 -14.33563 -14.10524 -13.49821 -13.37326 -12.81275 -12.46281 -12.36558
-11.93821 -11.67340 -11.46619 -11.30289 -11.12515 -11.02011 -10.80679 -10.61591
-10.51322 -10.30238 -10.14015 -9.76314 -9.56564 -9.38315 -9.21857 -8.85914
-8.38176 -6.99838 -6.04074 -4.02248 3.25605 3.34694 3.37414 4.41133
4.65911 4.85296 5.23092 5.28490 5.31420 5.48116 5.76481 5.91164
6.00064 6.02375 6.16537 6.24962 6.31425 6.33145 6.34955 6.45491
6.49850 6.57639 6.66837 6.69296 6.83355 6.88027 6.96516 7.04836
7.33872 7.60356 7.68416 7.92809 8.03062 8.20820 8.24693 8.39903
9.01878 9.57679 11.06951
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.025311 B = 0.011015 C = 0.009755
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1105.994016 B = 2541.277197 C = 2869.728572
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C 0.073 3.927
3 H 0.073 0.927
4 C -0.010 4.010
5 C -0.524 4.524
6 H 0.077 0.923
7 C 0.058 3.942
8 N -0.892 5.892
9 Si 0.881 3.119
10 H -0.270 1.270
11 H -0.285 1.285
12 H -0.284 1.284
13 N -0.508 5.508
14 C 0.059 3.941
15 C 0.110 3.890
16 H 0.046 0.954
17 O -0.549 6.549
18 C -0.151 4.151
19 C -0.105 4.105
20 C 0.057 3.943
21 H 0.097 0.903
22 C -0.142 4.142
23 H 0.045 0.955
24 H 0.048 0.952
25 H 0.047 0.953
26 H 0.025 0.975
27 H 0.012 0.988
28 H 0.259 0.741
29 H 0.070 0.930
30 H 0.065 0.935
31 H 0.360 0.640
32 H 0.069 0.931
33 H 0.054 0.946
34 H 0.063 0.937
35 H 0.052 0.948
36 H 0.044 0.956
37 H 0.068 0.932
38 H 0.048 0.952
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.096 -0.334 10.598 10.660
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.035 4.035
3 H 0.091 0.909
4 C -0.048 4.048
5 C -0.562 4.562
6 H 0.095 0.905
7 C -0.143 4.143
8 N -0.531 5.531
9 Si 0.709 3.291
10 H -0.195 1.195
11 H -0.211 1.211
12 H -0.211 1.211
13 N -0.232 5.232
14 C -0.069 4.069
15 C 0.050 3.950
16 H 0.064 0.936
17 O -0.352 6.352
18 C -0.189 4.189
19 C -0.143 4.143
20 C -0.051 4.051
21 H 0.115 0.885
22 C -0.200 4.200
23 H 0.064 0.936
24 H 0.067 0.933
25 H 0.066 0.934
26 H 0.044 0.956
27 H 0.031 0.969
28 H 0.068 0.932
29 H 0.088 0.912
30 H 0.083 0.917
31 H 0.204 0.796
32 H 0.088 0.912
33 H 0.072 0.928
34 H 0.082 0.918
35 H 0.071 0.929
36 H 0.063 0.937
37 H 0.086 0.914
38 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -1.556 0.118 10.349 10.466
hybrid contribution 1.766 -0.761 -0.521 1.992
sum 0.209 -0.643 9.828 9.851
Atomic orbital electron populations
1.21821 0.96737 1.00906 1.00041 1.21852 0.93042 0.98548 0.90086
0.90883 1.19803 0.96030 0.96478 0.92458 1.21687 0.93041 1.27109
1.14369 0.90546 1.25023 0.97978 0.95520 0.95803 1.69978 1.35472
1.29618 1.18072 0.86705 0.86336 0.77967 0.78134 1.19492 1.21131
1.21063 1.62261 1.14300 1.08981 1.37675 1.22065 1.00988 0.90284
0.93573 1.21907 0.90054 0.94639 0.88350 0.93585 1.86693 1.66358
1.65187 1.16965 1.22259 0.97295 0.98225 1.01147 1.21539 0.99266
0.94399 0.99096 1.22152 0.89946 0.95888 0.97107 0.88539 1.21888
0.99642 0.96366 1.02084 0.93551 0.93287 0.93448 0.95627 0.96934
0.93172 0.91186 0.91741 0.79565 0.91248 0.92776 0.91813 0.92884
0.93693 0.91370 0.93271
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.56 9.25 37.16 0.34 -2.22 16
2 C 0.07 1.53 2.36 -67.71 -0.16 1.37 16
3 H 0.07 1.56 5.71 -51.93 -0.30 1.27 16
4 C -0.01 -0.24 4.10 -27.88 -0.11 -0.35 16
5 C -0.52 -13.81 6.70 -34.44 -0.23 -14.04 16
6 H 0.08 1.93 3.56 -52.49 -0.19 1.74 16
7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16
8 N -0.89 -26.06 13.29 55.43 0.74 -25.33 16
9 Si 0.88 21.05 29.54 -169.99 -5.02 16.03 16
10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16
11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16
13 N -0.51 -10.10 4.31 -218.76 -0.94 -11.04 16
14 C 0.06 1.14 4.21 -3.84 -0.02 1.13 16
15 C 0.11 1.75 3.81 -26.65 -0.10 1.65 16
16 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
17 O -0.55 -8.51 12.65 -35.23 -0.45 -8.96 16
18 C -0.15 -2.32 5.70 -26.61 -0.15 -2.47 16
19 C -0.11 -1.74 5.22 -26.65 -0.14 -1.88 16
20 C 0.06 1.11 1.76 -67.72 -0.12 0.99 16
21 H 0.10 2.20 4.81 -51.93 -0.25 1.96 16
22 C -0.14 -2.61 7.83 37.16 0.29 -2.32 16
23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16
25 H 0.05 0.87 6.31 -51.92 -0.33 0.55 16
26 H 0.03 0.68 5.95 -51.93 -0.31 0.37 16
27 H 0.01 0.34 8.12 -51.93 -0.42 -0.09 16
28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16
29 H 0.07 1.35 6.21 -51.93 -0.32 1.03 16
30 H 0.06 1.42 6.39 -51.93 -0.33 1.09 16
31 H 0.36 3.89 9.08 45.56 0.41 4.30 16
32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16
33 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16
34 H 0.06 1.06 7.80 -51.93 -0.40 0.65 16
35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16
36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16
37 H 0.07 1.35 5.15 -51.93 -0.27 1.08 16
38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16
LS Contribution 280.02 15.07 4.22 4.22
Total: -1.00 -29.27 280.02 -7.17 -36.44
By element:
Atomic # 1 Polarization: 10.50 SS G_CDS: -5.22 Total: 5.28 kcal
Atomic # 6 Polarization: -16.14 SS G_CDS: -0.50 Total: -16.64 kcal
Atomic # 7 Polarization: -36.16 SS G_CDS: -0.21 Total: -36.37 kcal
Atomic # 8 Polarization: -8.51 SS G_CDS: -0.45 Total: -8.96 kcal
Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal
Total LS contribution 4.22 Total: 4.22 kcal
Total: -29.27 -7.17 -36.44 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000709994002.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.459 kcal
(2) G-P(sol) polarization free energy of solvation -29.267 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.726 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.436 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.895 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds