Wall clock time and date at job start Mon Mar 30 2020 02:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46498 * 2 1 4 4 C 1.53002 * 109.46981 * 240.00485 * 2 1 3 5 5 C 1.50697 * 109.46884 * 171.46804 * 4 2 1 6 6 H 1.07992 * 120.00626 * 354.13249 * 5 4 2 7 7 C 1.37882 * 119.99483 * 174.13062 * 5 4 2 8 8 N 1.31514 * 120.00587 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99628 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47164 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47345 * 119.99966 * 9 7 5 12 12 H 1.48508 * 109.47094 * 239.99795 * 9 7 5 13 13 N 1.46899 * 109.47468 * 120.00323 * 2 1 3 14 14 C 1.46843 * 111.00053 * 67.57028 * 13 2 1 15 15 C 1.53039 * 109.52273 * 185.84177 * 14 13 2 16 16 H 1.09003 * 109.50391 * 180.87756 * 15 14 13 17 17 O 1.42899 * 109.50612 * 60.75859 * 15 14 13 18 18 C 1.53114 * 109.27493 * 300.81940 * 15 14 13 19 19 C 1.53114 * 109.16400 * 57.65419 * 18 15 14 20 20 C 1.46842 * 110.99790 * 191.78045 * 13 2 1 21 21 H 1.09002 * 109.45672 * 294.17020 * 20 13 2 22 22 C 1.53001 * 109.46447 * 54.14261 * 20 13 2 23 23 H 1.09005 * 109.47023 * 304.42467 * 1 2 3 24 24 H 1.08997 * 109.47655 * 64.42994 * 1 2 3 25 25 H 1.09010 * 109.46997 * 184.43558 * 1 2 3 26 26 H 1.08999 * 109.46850 * 291.46748 * 4 2 1 27 27 H 1.09000 * 109.47194 * 51.46562 * 4 2 1 28 28 H 0.96996 * 120.00681 * 179.97438 * 8 7 5 29 29 H 1.09005 * 109.46164 * 305.85589 * 14 13 2 30 30 H 1.08998 * 109.46619 * 65.83390 * 14 13 2 31 31 H 0.96701 * 114.00088 * 180.19713 * 17 15 14 32 32 H 1.09000 * 109.52628 * 297.74541 * 18 15 14 33 33 H 1.09010 * 109.52247 * 177.56226 * 18 15 14 34 34 H 1.09007 * 109.50300 * 62.28570 * 19 18 15 35 35 H 1.08999 * 109.50680 * 182.35925 * 19 18 15 36 36 H 1.09007 * 109.46765 * 172.96787 * 22 20 13 37 37 H 1.08995 * 109.47275 * 292.96670 * 22 20 13 38 38 H 1.09000 * 109.46848 * 52.97092 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5322 -0.5412 -1.3592 6 1 4.0503 0.1071 -0.6683 7 6 4.2359 -1.2045 -2.3421 8 7 3.6051 -1.9945 -3.1832 9 14 6.0856 -0.9820 -2.4779 10 1 6.5509 -0.0486 -1.4207 11 1 6.7561 -2.2962 -2.3087 12 1 6.4204 -0.4238 -3.8127 13 7 2.0198 -0.6925 1.1994 14 6 1.7021 -2.1252 1.1464 15 6 2.0951 -2.7855 2.4699 16 1 1.8735 -3.8518 2.4245 17 8 1.3570 -2.1891 3.5383 18 6 3.5940 -2.5845 2.7095 19 6 3.9060 -1.0855 2.7119 20 6 3.4605 -0.4745 1.3815 21 1 4.0054 -0.9471 0.5642 22 6 3.7521 1.0275 1.3872 23 1 -0.3633 0.5810 0.8477 24 1 -0.3634 0.4435 -0.9270 25 1 -0.3633 -1.0247 0.0795 26 1 1.8065 -1.7833 -1.1764 27 1 1.5575 -0.3029 -2.1327 28 1 4.1001 -2.4608 -3.8749 29 1 0.6326 -2.2541 0.9797 30 1 2.2554 -2.5900 0.3304 31 1 1.5583 -2.5579 4.4093 32 1 4.1586 -3.0729 1.9153 33 1 3.8700 -3.0157 3.6719 34 1 3.3715 -0.6038 3.5307 35 1 4.9782 -0.9372 2.8403 36 1 4.7978 1.1935 1.6461 37 1 3.5527 1.4401 0.3982 38 1 3.1135 1.5187 2.1214 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709994002.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:54 Heat of formation + Delta-G solvation = -48.894761 kcal Electronic energy + Delta-G solvation = -17582.145793 eV Core-core repulsion = 15038.456350 eV Total energy + Delta-G solvation = -2543.689443 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.31612 -36.33805 -33.65048 -32.46176 -31.03514 -29.38605 -27.40719 -26.10001 -23.76834 -22.84641 -20.92021 -19.74178 -18.26995 -16.67055 -16.16921 -15.69341 -14.78730 -14.33563 -14.10524 -13.49821 -13.37326 -12.81275 -12.46281 -12.36558 -11.93821 -11.67340 -11.46619 -11.30289 -11.12515 -11.02011 -10.80679 -10.61591 -10.51322 -10.30238 -10.14015 -9.76314 -9.56564 -9.38315 -9.21857 -8.85914 -8.38176 -6.99838 -6.04074 -4.02248 3.25605 3.34694 3.37414 4.41133 4.65911 4.85296 5.23092 5.28490 5.31420 5.48116 5.76481 5.91164 6.00064 6.02375 6.16537 6.24962 6.31425 6.33145 6.34955 6.45491 6.49850 6.57639 6.66837 6.69296 6.83355 6.88027 6.96516 7.04836 7.33872 7.60356 7.68416 7.92809 8.03062 8.20820 8.24693 8.39903 9.01878 9.57679 11.06951 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025311 B = 0.011015 C = 0.009755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.994016 B = 2541.277197 C = 2869.728572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.073 3.927 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.524 4.524 6 H 0.077 0.923 7 C 0.058 3.942 8 N -0.892 5.892 9 Si 0.881 3.119 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.508 5.508 14 C 0.059 3.941 15 C 0.110 3.890 16 H 0.046 0.954 17 O -0.549 6.549 18 C -0.151 4.151 19 C -0.105 4.105 20 C 0.057 3.943 21 H 0.097 0.903 22 C -0.142 4.142 23 H 0.045 0.955 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.025 0.975 27 H 0.012 0.988 28 H 0.259 0.741 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.360 0.640 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.068 0.932 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.096 -0.334 10.598 10.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.035 4.035 3 H 0.091 0.909 4 C -0.048 4.048 5 C -0.562 4.562 6 H 0.095 0.905 7 C -0.143 4.143 8 N -0.531 5.531 9 Si 0.709 3.291 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.232 5.232 14 C -0.069 4.069 15 C 0.050 3.950 16 H 0.064 0.936 17 O -0.352 6.352 18 C -0.189 4.189 19 C -0.143 4.143 20 C -0.051 4.051 21 H 0.115 0.885 22 C -0.200 4.200 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.031 0.969 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.204 0.796 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.556 0.118 10.349 10.466 hybrid contribution 1.766 -0.761 -0.521 1.992 sum 0.209 -0.643 9.828 9.851 Atomic orbital electron populations 1.21821 0.96737 1.00906 1.00041 1.21852 0.93042 0.98548 0.90086 0.90883 1.19803 0.96030 0.96478 0.92458 1.21687 0.93041 1.27109 1.14369 0.90546 1.25023 0.97978 0.95520 0.95803 1.69978 1.35472 1.29618 1.18072 0.86705 0.86336 0.77967 0.78134 1.19492 1.21131 1.21063 1.62261 1.14300 1.08981 1.37675 1.22065 1.00988 0.90284 0.93573 1.21907 0.90054 0.94639 0.88350 0.93585 1.86693 1.66358 1.65187 1.16965 1.22259 0.97295 0.98225 1.01147 1.21539 0.99266 0.94399 0.99096 1.22152 0.89946 0.95888 0.97107 0.88539 1.21888 0.99642 0.96366 1.02084 0.93551 0.93287 0.93448 0.95627 0.96934 0.93172 0.91186 0.91741 0.79565 0.91248 0.92776 0.91813 0.92884 0.93693 0.91370 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.25 37.16 0.34 -2.22 16 2 C 0.07 1.53 2.36 -67.71 -0.16 1.37 16 3 H 0.07 1.56 5.71 -51.93 -0.30 1.27 16 4 C -0.01 -0.24 4.10 -27.88 -0.11 -0.35 16 5 C -0.52 -13.81 6.70 -34.44 -0.23 -14.04 16 6 H 0.08 1.93 3.56 -52.49 -0.19 1.74 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.89 -26.06 13.29 55.43 0.74 -25.33 16 9 Si 0.88 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.51 -10.10 4.31 -218.76 -0.94 -11.04 16 14 C 0.06 1.14 4.21 -3.84 -0.02 1.13 16 15 C 0.11 1.75 3.81 -26.65 -0.10 1.65 16 16 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 17 O -0.55 -8.51 12.65 -35.23 -0.45 -8.96 16 18 C -0.15 -2.32 5.70 -26.61 -0.15 -2.47 16 19 C -0.11 -1.74 5.22 -26.65 -0.14 -1.88 16 20 C 0.06 1.11 1.76 -67.72 -0.12 0.99 16 21 H 0.10 2.20 4.81 -51.93 -0.25 1.96 16 22 C -0.14 -2.61 7.83 37.16 0.29 -2.32 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.87 6.31 -51.92 -0.33 0.55 16 26 H 0.03 0.68 5.95 -51.93 -0.31 0.37 16 27 H 0.01 0.34 8.12 -51.93 -0.42 -0.09 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.07 1.35 6.21 -51.93 -0.32 1.03 16 30 H 0.06 1.42 6.39 -51.93 -0.33 1.09 16 31 H 0.36 3.89 9.08 45.56 0.41 4.30 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.06 1.06 7.80 -51.93 -0.40 0.65 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.35 5.15 -51.93 -0.27 1.08 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 280.02 15.07 4.22 4.22 Total: -1.00 -29.27 280.02 -7.17 -36.44 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.22 Total: 5.28 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -0.50 Total: -16.64 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.21 Total: -36.37 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.45 Total: -8.96 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.27 -7.17 -36.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709994002.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.459 kcal (2) G-P(sol) polarization free energy of solvation -29.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds