Wall clock time and date at job start Mon Mar 30 2020 02:50:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08997 * 109.46498 * 2 1
4 4 C 1.53002 * 109.46981 * 240.00485 * 2 1 3
5 5 C 1.50697 * 109.46884 * 171.46804 * 4 2 1
6 6 H 1.07992 * 120.00626 * 354.13249 * 5 4 2
7 7 C 1.37882 * 119.99483 * 174.13062 * 5 4 2
8 8 N 1.31514 * 120.00587 * 359.97438 * 7 5 4
9 9 Si 1.86800 * 119.99628 * 180.02562 * 7 5 4
10 10 H 1.48502 * 109.47164 * 359.97438 * 9 7 5
11 11 H 1.48501 * 109.47345 * 119.99966 * 9 7 5
12 12 H 1.48508 * 109.47094 * 239.99795 * 9 7 5
13 13 N 1.46899 * 109.47468 * 120.00323 * 2 1 3
14 14 C 1.46843 * 111.00053 * 67.57028 * 13 2 1
15 15 C 1.53039 * 109.52273 * 185.84177 * 14 13 2
16 16 H 1.09003 * 109.50391 * 180.87756 * 15 14 13
17 17 O 1.42899 * 109.50612 * 60.75859 * 15 14 13
18 18 C 1.53114 * 109.27493 * 300.81940 * 15 14 13
19 19 C 1.53114 * 109.16400 * 57.65419 * 18 15 14
20 20 C 1.46842 * 110.99790 * 191.78045 * 13 2 1
21 21 H 1.09002 * 109.45672 * 294.17020 * 20 13 2
22 22 C 1.53001 * 109.46447 * 54.14261 * 20 13 2
23 23 H 1.09005 * 109.47023 * 304.42467 * 1 2 3
24 24 H 1.08997 * 109.47655 * 64.42994 * 1 2 3
25 25 H 1.09010 * 109.46997 * 184.43558 * 1 2 3
26 26 H 1.08999 * 109.46850 * 291.46748 * 4 2 1
27 27 H 1.09000 * 109.47194 * 51.46562 * 4 2 1
28 28 H 0.96996 * 120.00681 * 179.97438 * 8 7 5
29 29 H 1.09005 * 109.46164 * 305.85589 * 14 13 2
30 30 H 1.08998 * 109.46619 * 65.83390 * 14 13 2
31 31 H 0.96701 * 114.00088 * 180.19713 * 17 15 14
32 32 H 1.09000 * 109.52628 * 297.74541 * 18 15 14
33 33 H 1.09010 * 109.52247 * 177.56226 * 18 15 14
34 34 H 1.09007 * 109.50300 * 62.28570 * 19 18 15
35 35 H 1.08999 * 109.50680 * 182.35925 * 19 18 15
36 36 H 1.09007 * 109.46765 * 172.96787 * 22 20 13
37 37 H 1.08995 * 109.47275 * 292.96670 * 22 20 13
38 38 H 1.09000 * 109.46848 * 52.97092 * 22 20 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 3.5322 -0.5412 -1.3592
6 1 4.0503 0.1071 -0.6683
7 6 4.2359 -1.2045 -2.3421
8 7 3.6051 -1.9945 -3.1832
9 14 6.0856 -0.9820 -2.4779
10 1 6.5509 -0.0486 -1.4207
11 1 6.7561 -2.2962 -2.3087
12 1 6.4204 -0.4238 -3.8127
13 7 2.0198 -0.6925 1.1994
14 6 1.7021 -2.1252 1.1464
15 6 2.0951 -2.7855 2.4699
16 1 1.8735 -3.8518 2.4245
17 8 1.3570 -2.1891 3.5383
18 6 3.5940 -2.5845 2.7095
19 6 3.9060 -1.0855 2.7119
20 6 3.4605 -0.4745 1.3815
21 1 4.0054 -0.9471 0.5642
22 6 3.7521 1.0275 1.3872
23 1 -0.3633 0.5810 0.8477
24 1 -0.3634 0.4435 -0.9270
25 1 -0.3633 -1.0247 0.0795
26 1 1.8065 -1.7833 -1.1764
27 1 1.5575 -0.3029 -2.1327
28 1 4.1001 -2.4608 -3.8749
29 1 0.6326 -2.2541 0.9797
30 1 2.2554 -2.5900 0.3304
31 1 1.5583 -2.5579 4.4093
32 1 4.1586 -3.0729 1.9153
33 1 3.8700 -3.0157 3.6719
34 1 3.3715 -0.6038 3.5307
35 1 4.9782 -0.9372 2.8403
36 1 4.7978 1.1935 1.6461
37 1 3.5527 1.4401 0.3982
38 1 3.1135 1.5187 2.1214
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000709994002.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:50:51
Heat of formation + Delta-G solvation = -70.059101 kcal
Electronic energy + Delta-G solvation = -17583.063547 eV
Core-core repulsion = 15038.456350 eV
Total energy + Delta-G solvation = -2544.607197 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-40.82676 -37.73120 -35.22481 -34.39881 -32.45780 -30.94137 -29.34056 -27.53325
-25.34999 -24.70831 -22.37120 -21.23692 -19.89814 -18.52816 -17.59463 -17.21652
-16.58577 -15.93451 -15.49536 -15.09747 -14.88690 -14.60381 -14.00735 -13.78693
-13.71111 -13.31531 -13.06837 -12.92496 -12.75497 -12.46860 -12.41224 -12.31602
-12.12462 -11.96766 -11.74527 -11.44829 -11.19952 -10.87774 -10.82451 -10.51703
-10.48378 -8.71162 -8.16018 -6.18969 1.35092 1.37852 1.48549 2.40112
3.12760 3.27287 3.54838 3.95649 3.99103 4.19563 4.28044 4.46437
4.51545 4.64148 4.72316 4.74870 4.85489 4.87228 4.95931 5.02251
5.04795 5.11303 5.12506 5.25847 5.29697 5.31593 5.35378 5.40730
5.59204 5.68227 5.77959 5.87109 6.28491 6.52568 6.59712 6.92877
7.12221 7.44000 8.96079
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.025311 B = 0.011015 C = 0.009755
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1105.994016 B = 2541.277197 C = 2869.728572
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C 0.077 3.923
3 H 0.072 0.928
4 C -0.001 4.001
5 C -0.522 4.522
6 H 0.089 0.911
7 C 0.001 3.999
8 N -0.935 5.935
9 Si 0.944 3.056
10 H -0.256 1.256
11 H -0.283 1.283
12 H -0.285 1.285
13 N -0.499 5.499
14 C 0.058 3.942
15 C 0.117 3.883
16 H 0.065 0.935
17 O -0.561 6.561
18 C -0.149 4.149
19 C -0.099 4.099
20 C 0.051 3.949
21 H 0.060 0.940
22 C -0.137 4.137
23 H 0.063 0.937
24 H 0.052 0.948
25 H 0.044 0.956
26 H 0.001 0.999
27 H -0.019 1.019
28 H 0.258 0.742
29 H 0.065 0.935
30 H 0.028 0.972
31 H 0.384 0.616
32 H 0.053 0.947
33 H 0.090 0.910
34 H 0.071 0.929
35 H 0.067 0.933
36 H 0.061 0.939
37 H 0.046 0.954
38 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.285 0.075 13.064 13.067
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.031 4.031
3 H 0.090 0.910
4 C -0.039 4.039
5 C -0.560 4.560
6 H 0.106 0.894
7 C -0.196 4.196
8 N -0.576 5.576
9 Si 0.770 3.230
10 H -0.179 1.179
11 H -0.209 1.209
12 H -0.211 1.211
13 N -0.223 5.223
14 C -0.070 4.070
15 C 0.058 3.942
16 H 0.083 0.917
17 O -0.368 6.368
18 C -0.187 4.187
19 C -0.137 4.137
20 C -0.057 4.057
21 H 0.077 0.923
22 C -0.194 4.194
23 H 0.082 0.918
24 H 0.071 0.929
25 H 0.063 0.937
26 H 0.019 0.981
27 H 0.000 1.000
28 H 0.067 0.933
29 H 0.083 0.917
30 H 0.046 0.954
31 H 0.232 0.768
32 H 0.072 0.928
33 H 0.109 0.891
34 H 0.089 0.911
35 H 0.085 0.915
36 H 0.080 0.920
37 H 0.065 0.935
38 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -0.741 0.532 12.850 12.883
hybrid contribution 1.457 -0.887 -1.256 2.118
sum 0.716 -0.354 11.595 11.622
Atomic orbital electron populations
1.21743 0.94835 1.01162 1.01035 1.21756 0.94652 0.97930 0.88805
0.91023 1.19707 0.95687 0.95252 0.93294 1.22072 0.93757 1.26276
1.13858 0.89377 1.25842 1.02521 0.95505 0.95730 1.70120 1.37241
1.31160 1.19098 0.85691 0.80987 0.78073 0.78229 1.17933 1.20945
1.21141 1.62386 1.14691 1.09201 1.36042 1.22030 1.00155 0.89883
0.94953 1.21712 0.90551 0.95028 0.86910 0.91748 1.86619 1.66335
1.65646 1.18181 1.22252 0.96417 0.97453 1.02540 1.21491 1.00146
0.95021 0.97064 1.22151 0.89066 0.96680 0.97808 0.92256 1.21825
1.01009 0.95391 1.01211 0.91757 0.92920 0.93683 0.98087 1.00027
0.93338 0.91683 0.95436 0.76784 0.92838 0.89111 0.91056 0.91473
0.92004 0.93463 0.92053
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.80 9.25 71.98 0.67 -4.14 16
2 C 0.08 3.26 2.36 44.92 0.11 3.37 16
3 H 0.07 3.06 5.71 -2.39 -0.01 3.04 16
4 C 0.00 -0.06 4.10 29.85 0.12 0.06 16
5 C -0.52 -28.13 6.70 25.60 0.17 -27.95 16
6 H 0.09 4.47 3.56 -2.91 -0.01 4.46 16
7 C 0.00 0.06 5.46 84.66 0.46 0.52 16
8 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16
9 Si 0.94 43.70 29.54 68.60 2.03 45.73 16
10 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16
11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16
12 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16
13 N -0.50 -19.52 4.31 -846.03 -3.65 -23.17 16
14 C 0.06 2.25 4.21 86.33 0.36 2.61 16
15 C 0.12 3.50 3.81 30.65 0.12 3.61 16
16 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16
17 O -0.56 -15.52 12.65 -148.98 -1.88 -17.40 16
18 C -0.15 -4.14 5.70 30.67 0.17 -3.96 16
19 C -0.10 -3.01 5.22 30.64 0.16 -2.85 16
20 C 0.05 1.93 1.76 44.94 0.08 2.01 16
21 H 0.06 2.72 4.81 -2.39 -0.01 2.70 16
22 C -0.14 -4.77 7.83 71.98 0.56 -4.20 16
23 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16
24 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16
25 H 0.04 1.66 6.31 -2.38 -0.02 1.64 16
26 H 0.00 0.05 5.95 -2.39 -0.01 0.03 16
27 H -0.02 -1.07 8.12 -2.39 -0.02 -1.08 16
28 H 0.26 14.83 8.31 -92.71 -0.77 14.05 16
29 H 0.06 2.52 6.21 -2.38 -0.01 2.51 16
30 H 0.03 1.26 6.39 -2.39 -0.02 1.25 16
31 H 0.38 6.65 9.08 -74.06 -0.67 5.98 16
32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16
33 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16
34 H 0.07 2.09 7.80 -2.38 -0.02 2.07 16
35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16
36 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16
37 H 0.05 1.82 5.15 -2.39 -0.01 1.81 16
38 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16
Total: -1.00 -63.94 280.02 0.14 -63.80
By element:
Atomic # 1 Polarization: 17.84 SS G_CDS: 0.38 Total: 18.22 kcal
Atomic # 6 Polarization: -33.91 SS G_CDS: 2.98 Total: -30.92 kcal
Atomic # 7 Polarization: -76.06 SS G_CDS: -3.36 Total: -79.42 kcal
Atomic # 8 Polarization: -15.52 SS G_CDS: -1.88 Total: -17.40 kcal
Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal
Total: -63.94 0.14 -63.80 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000709994002.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.260 kcal
(2) G-P(sol) polarization free energy of solvation -63.942 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.202 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.143 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.799 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.059 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds