Wall clock time and date at job start Mon Mar 30 2020 02:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46498 * 2 1 4 4 C 1.53002 * 109.46981 * 240.00485 * 2 1 3 5 5 C 1.50697 * 109.46884 * 171.46804 * 4 2 1 6 6 H 1.07992 * 120.00626 * 354.13249 * 5 4 2 7 7 C 1.37882 * 119.99483 * 174.13062 * 5 4 2 8 8 N 1.31514 * 120.00587 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99628 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47164 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47345 * 119.99966 * 9 7 5 12 12 H 1.48508 * 109.47094 * 239.99795 * 9 7 5 13 13 N 1.46899 * 109.47468 * 120.00323 * 2 1 3 14 14 C 1.46843 * 111.00053 * 67.57028 * 13 2 1 15 15 C 1.53039 * 109.52273 * 185.84177 * 14 13 2 16 16 H 1.09003 * 109.50391 * 180.87756 * 15 14 13 17 17 O 1.42899 * 109.50612 * 60.75859 * 15 14 13 18 18 C 1.53114 * 109.27493 * 300.81940 * 15 14 13 19 19 C 1.53114 * 109.16400 * 57.65419 * 18 15 14 20 20 C 1.46842 * 110.99790 * 191.78045 * 13 2 1 21 21 H 1.09002 * 109.45672 * 294.17020 * 20 13 2 22 22 C 1.53001 * 109.46447 * 54.14261 * 20 13 2 23 23 H 1.09005 * 109.47023 * 304.42467 * 1 2 3 24 24 H 1.08997 * 109.47655 * 64.42994 * 1 2 3 25 25 H 1.09010 * 109.46997 * 184.43558 * 1 2 3 26 26 H 1.08999 * 109.46850 * 291.46748 * 4 2 1 27 27 H 1.09000 * 109.47194 * 51.46562 * 4 2 1 28 28 H 0.96996 * 120.00681 * 179.97438 * 8 7 5 29 29 H 1.09005 * 109.46164 * 305.85589 * 14 13 2 30 30 H 1.08998 * 109.46619 * 65.83390 * 14 13 2 31 31 H 0.96701 * 114.00088 * 180.19713 * 17 15 14 32 32 H 1.09000 * 109.52628 * 297.74541 * 18 15 14 33 33 H 1.09010 * 109.52247 * 177.56226 * 18 15 14 34 34 H 1.09007 * 109.50300 * 62.28570 * 19 18 15 35 35 H 1.08999 * 109.50680 * 182.35925 * 19 18 15 36 36 H 1.09007 * 109.46765 * 172.96787 * 22 20 13 37 37 H 1.08995 * 109.47275 * 292.96670 * 22 20 13 38 38 H 1.09000 * 109.46848 * 52.97092 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5322 -0.5412 -1.3592 6 1 4.0503 0.1071 -0.6683 7 6 4.2359 -1.2045 -2.3421 8 7 3.6051 -1.9945 -3.1832 9 14 6.0856 -0.9820 -2.4779 10 1 6.5509 -0.0486 -1.4207 11 1 6.7561 -2.2962 -2.3087 12 1 6.4204 -0.4238 -3.8127 13 7 2.0198 -0.6925 1.1994 14 6 1.7021 -2.1252 1.1464 15 6 2.0951 -2.7855 2.4699 16 1 1.8735 -3.8518 2.4245 17 8 1.3570 -2.1891 3.5383 18 6 3.5940 -2.5845 2.7095 19 6 3.9060 -1.0855 2.7119 20 6 3.4605 -0.4745 1.3815 21 1 4.0054 -0.9471 0.5642 22 6 3.7521 1.0275 1.3872 23 1 -0.3633 0.5810 0.8477 24 1 -0.3634 0.4435 -0.9270 25 1 -0.3633 -1.0247 0.0795 26 1 1.8065 -1.7833 -1.1764 27 1 1.5575 -0.3029 -2.1327 28 1 4.1001 -2.4608 -3.8749 29 1 0.6326 -2.2541 0.9797 30 1 2.2554 -2.5900 0.3304 31 1 1.5583 -2.5579 4.4093 32 1 4.1586 -3.0729 1.9153 33 1 3.8700 -3.0157 3.6719 34 1 3.3715 -0.6038 3.5307 35 1 4.9782 -0.9372 2.8403 36 1 4.7978 1.1935 1.6461 37 1 3.5527 1.4401 0.3982 38 1 3.1135 1.5187 2.1214 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709994002.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:51 Heat of formation + Delta-G solvation = -70.059101 kcal Electronic energy + Delta-G solvation = -17583.063547 eV Core-core repulsion = 15038.456350 eV Total energy + Delta-G solvation = -2544.607197 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.82676 -37.73120 -35.22481 -34.39881 -32.45780 -30.94137 -29.34056 -27.53325 -25.34999 -24.70831 -22.37120 -21.23692 -19.89814 -18.52816 -17.59463 -17.21652 -16.58577 -15.93451 -15.49536 -15.09747 -14.88690 -14.60381 -14.00735 -13.78693 -13.71111 -13.31531 -13.06837 -12.92496 -12.75497 -12.46860 -12.41224 -12.31602 -12.12462 -11.96766 -11.74527 -11.44829 -11.19952 -10.87774 -10.82451 -10.51703 -10.48378 -8.71162 -8.16018 -6.18969 1.35092 1.37852 1.48549 2.40112 3.12760 3.27287 3.54838 3.95649 3.99103 4.19563 4.28044 4.46437 4.51545 4.64148 4.72316 4.74870 4.85489 4.87228 4.95931 5.02251 5.04795 5.11303 5.12506 5.25847 5.29697 5.31593 5.35378 5.40730 5.59204 5.68227 5.77959 5.87109 6.28491 6.52568 6.59712 6.92877 7.12221 7.44000 8.96079 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025311 B = 0.011015 C = 0.009755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.994016 B = 2541.277197 C = 2869.728572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.077 3.923 3 H 0.072 0.928 4 C -0.001 4.001 5 C -0.522 4.522 6 H 0.089 0.911 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.944 3.056 10 H -0.256 1.256 11 H -0.283 1.283 12 H -0.285 1.285 13 N -0.499 5.499 14 C 0.058 3.942 15 C 0.117 3.883 16 H 0.065 0.935 17 O -0.561 6.561 18 C -0.149 4.149 19 C -0.099 4.099 20 C 0.051 3.949 21 H 0.060 0.940 22 C -0.137 4.137 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.044 0.956 26 H 0.001 0.999 27 H -0.019 1.019 28 H 0.258 0.742 29 H 0.065 0.935 30 H 0.028 0.972 31 H 0.384 0.616 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.046 0.954 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.285 0.075 13.064 13.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.031 4.031 3 H 0.090 0.910 4 C -0.039 4.039 5 C -0.560 4.560 6 H 0.106 0.894 7 C -0.196 4.196 8 N -0.576 5.576 9 Si 0.770 3.230 10 H -0.179 1.179 11 H -0.209 1.209 12 H -0.211 1.211 13 N -0.223 5.223 14 C -0.070 4.070 15 C 0.058 3.942 16 H 0.083 0.917 17 O -0.368 6.368 18 C -0.187 4.187 19 C -0.137 4.137 20 C -0.057 4.057 21 H 0.077 0.923 22 C -0.194 4.194 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.019 0.981 27 H 0.000 1.000 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.232 0.768 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.741 0.532 12.850 12.883 hybrid contribution 1.457 -0.887 -1.256 2.118 sum 0.716 -0.354 11.595 11.622 Atomic orbital electron populations 1.21743 0.94835 1.01162 1.01035 1.21756 0.94652 0.97930 0.88805 0.91023 1.19707 0.95687 0.95252 0.93294 1.22072 0.93757 1.26276 1.13858 0.89377 1.25842 1.02521 0.95505 0.95730 1.70120 1.37241 1.31160 1.19098 0.85691 0.80987 0.78073 0.78229 1.17933 1.20945 1.21141 1.62386 1.14691 1.09201 1.36042 1.22030 1.00155 0.89883 0.94953 1.21712 0.90551 0.95028 0.86910 0.91748 1.86619 1.66335 1.65646 1.18181 1.22252 0.96417 0.97453 1.02540 1.21491 1.00146 0.95021 0.97064 1.22151 0.89066 0.96680 0.97808 0.92256 1.21825 1.01009 0.95391 1.01211 0.91757 0.92920 0.93683 0.98087 1.00027 0.93338 0.91683 0.95436 0.76784 0.92838 0.89111 0.91056 0.91473 0.92004 0.93463 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.80 9.25 71.98 0.67 -4.14 16 2 C 0.08 3.26 2.36 44.92 0.11 3.37 16 3 H 0.07 3.06 5.71 -2.39 -0.01 3.04 16 4 C 0.00 -0.06 4.10 29.85 0.12 0.06 16 5 C -0.52 -28.13 6.70 25.60 0.17 -27.95 16 6 H 0.09 4.47 3.56 -2.91 -0.01 4.46 16 7 C 0.00 0.06 5.46 84.66 0.46 0.52 16 8 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16 9 Si 0.94 43.70 29.54 68.60 2.03 45.73 16 10 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 13 N -0.50 -19.52 4.31 -846.03 -3.65 -23.17 16 14 C 0.06 2.25 4.21 86.33 0.36 2.61 16 15 C 0.12 3.50 3.81 30.65 0.12 3.61 16 16 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 17 O -0.56 -15.52 12.65 -148.98 -1.88 -17.40 16 18 C -0.15 -4.14 5.70 30.67 0.17 -3.96 16 19 C -0.10 -3.01 5.22 30.64 0.16 -2.85 16 20 C 0.05 1.93 1.76 44.94 0.08 2.01 16 21 H 0.06 2.72 4.81 -2.39 -0.01 2.70 16 22 C -0.14 -4.77 7.83 71.98 0.56 -4.20 16 23 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 24 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.04 1.66 6.31 -2.38 -0.02 1.64 16 26 H 0.00 0.05 5.95 -2.39 -0.01 0.03 16 27 H -0.02 -1.07 8.12 -2.39 -0.02 -1.08 16 28 H 0.26 14.83 8.31 -92.71 -0.77 14.05 16 29 H 0.06 2.52 6.21 -2.38 -0.01 2.51 16 30 H 0.03 1.26 6.39 -2.39 -0.02 1.25 16 31 H 0.38 6.65 9.08 -74.06 -0.67 5.98 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.07 2.09 7.80 -2.38 -0.02 2.07 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.05 1.82 5.15 -2.39 -0.01 1.81 16 38 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -63.94 280.02 0.14 -63.80 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.38 Total: 18.22 kcal Atomic # 6 Polarization: -33.91 SS G_CDS: 2.98 Total: -30.92 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -3.36 Total: -79.42 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -1.88 Total: -17.40 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -63.94 0.14 -63.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709994002.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.260 kcal (2) G-P(sol) polarization free energy of solvation -63.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds