Wall clock time and date at job start Mon Mar 30 2020 02:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47427 * 2 1 4 4 C 1.53001 * 109.47345 * 119.99818 * 2 1 3 5 5 C 1.50694 * 109.47168 * 184.99962 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 O 1.42903 * 109.47161 * 240.00030 * 2 1 3 14 14 C 1.42898 * 114.00145 * 89.99511 * 13 2 1 15 15 H 1.08998 * 109.50467 * 330.08224 * 14 13 2 16 16 C 1.53113 * 109.50750 * 210.00091 * 14 13 2 17 17 C 1.53112 * 109.16325 * 182.40782 * 16 14 13 18 18 C 1.53040 * 109.27850 * 57.65477 * 17 16 14 19 19 H 1.09001 * 109.46026 * 60.83922 * 18 17 16 20 20 C 1.52999 * 109.46132 * 180.80498 * 18 17 16 21 21 N 1.46847 * 109.52238 * 300.82169 * 18 17 16 22 22 C 1.46842 * 111.19784 * 61.74413 * 21 18 17 23 23 H 1.09001 * 109.47112 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46969 * 299.99825 * 1 2 3 25 25 H 1.08995 * 109.47237 * 60.00111 * 1 2 3 26 26 H 1.09007 * 109.46922 * 64.99664 * 4 2 1 27 27 H 1.09003 * 109.46836 * 305.00420 * 4 2 1 28 28 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 29 29 H 1.09009 * 109.52270 * 302.31866 * 16 14 13 30 30 H 1.09003 * 109.52070 * 62.49883 * 16 14 13 31 31 H 1.09007 * 109.50281 * 177.59879 * 17 16 14 32 32 H 1.08994 * 109.50515 * 297.67390 * 17 16 14 33 33 H 1.08996 * 109.47342 * 59.99691 * 20 18 17 34 34 H 1.08998 * 109.47032 * 180.02562 * 20 18 17 35 35 H 1.09007 * 109.47101 * 300.00061 * 20 18 17 36 36 H 1.00896 * 110.99428 * 297.64418 * 21 18 17 37 37 H 1.08996 * 109.46095 * 178.24259 * 22 21 18 38 38 H 1.09001 * 109.46714 * 58.26809 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0854 0.5396 7 6 4.2305 -1.1935 2.3578 8 7 3.5765 -1.8377 3.2995 9 14 6.0922 -1.0622 2.4360 10 1 6.5873 -1.7621 3.6486 11 1 6.6838 -1.6882 1.2264 12 1 6.4855 0.3685 2.4957 13 8 2.0064 -0.6736 -1.1668 14 6 2.2000 0.1829 -2.2941 15 1 1.4950 1.0127 -2.2460 16 6 1.9696 -0.6095 -3.5838 17 6 2.2376 0.2991 -4.7867 18 6 3.6674 0.8386 -4.7038 19 1 4.3713 0.0066 -4.7263 20 6 3.9331 1.7633 -5.8934 21 7 3.8369 1.5893 -3.4531 22 6 3.6309 0.7257 -2.2834 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 1.7516 -1.7715 1.2056 27 1 1.6054 -0.2617 2.1370 28 1 4.0610 -2.2451 4.0346 29 1 2.6476 -1.4625 -3.6134 30 1 0.9384 -0.9615 -3.6157 31 1 2.1166 -0.2712 -5.7077 32 1 1.5332 1.1309 -4.7786 33 1 3.2290 2.5950 -5.8715 34 1 4.9515 2.1472 -5.8347 35 1 3.8082 1.2059 -6.8218 36 1 3.2220 2.3887 -3.4252 37 1 3.7938 1.3025 -1.3730 38 1 4.3350 -0.1058 -2.3173 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710002339.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:55 Heat of formation + Delta-G solvation = -73.157416 kcal Electronic energy + Delta-G solvation = -16563.520132 eV Core-core repulsion = 14018.778581 eV Total energy + Delta-G solvation = -2544.741550 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.25711 -36.96509 -33.32283 -31.91926 -31.55417 -30.40838 -27.35266 -26.27634 -23.43473 -23.02089 -21.35383 -20.37951 -19.90809 -16.41914 -16.16259 -15.46434 -15.15050 -14.70697 -14.46691 -14.13044 -13.43070 -13.23309 -12.76260 -12.55450 -12.16259 -11.92961 -11.73796 -11.72011 -11.40091 -11.26219 -11.19768 -11.00464 -10.80748 -10.63544 -10.60372 -10.26429 -9.97169 -9.54259 -9.14627 -8.80193 -8.30059 -8.00108 -5.93085 -3.93189 3.39145 3.42741 3.46429 4.13964 4.48866 4.52697 4.78900 4.95858 5.15432 5.22263 5.38473 5.44003 5.45028 5.50020 5.68439 5.70356 5.77734 5.87298 5.92222 5.98490 6.06719 6.08071 6.16376 6.22874 6.26178 6.42415 6.55560 6.74801 6.95377 7.10995 7.49185 7.58587 7.69947 8.04643 8.21728 8.48920 9.10629 9.69054 11.18664 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026945 B = 0.007513 C = 0.006206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.892184 B = 3726.068599 C = 4510.494173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.091 3.909 3 H 0.045 0.955 4 C 0.024 3.976 5 C -0.506 4.506 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.890 3.110 10 H -0.288 1.288 11 H -0.277 1.277 12 H -0.278 1.278 13 O -0.359 6.359 14 C 0.059 3.941 15 H 0.046 0.954 16 C -0.118 4.118 17 C -0.147 4.147 18 C 0.078 3.922 19 H 0.081 0.919 20 C -0.143 4.143 21 N -0.677 5.677 22 C 0.037 3.963 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.038 0.962 26 H 0.024 0.976 27 H 0.029 0.971 28 H 0.260 0.740 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.335 0.665 37 H 0.083 0.917 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.215 6.101 -15.106 16.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.034 3.966 3 H 0.064 0.936 4 C -0.012 4.012 5 C -0.544 4.544 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.718 3.282 10 H -0.214 1.214 11 H -0.202 1.202 12 H -0.203 1.203 13 O -0.277 6.277 14 C -0.002 4.002 15 H 0.064 0.936 16 C -0.156 4.156 17 C -0.186 4.186 18 C -0.032 4.032 19 H 0.100 0.900 20 C -0.201 4.201 21 N -0.307 5.307 22 C -0.092 4.092 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.057 0.943 26 H 0.043 0.957 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.152 0.848 37 H 0.101 0.899 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.457 5.721 -14.915 16.163 hybrid contribution -0.117 0.117 0.166 0.234 sum -2.573 5.838 -14.750 16.070 Atomic orbital electron populations 1.22347 0.98345 1.01849 1.00378 1.22427 0.90807 0.96070 0.87319 0.93640 1.19232 0.96351 0.96283 0.89381 1.21110 0.91814 1.33930 1.07542 0.92555 1.24988 0.98220 0.95497 0.95822 1.69951 1.35484 1.36294 1.12215 0.86683 0.86030 0.78150 0.77305 1.21419 1.20234 1.20322 1.88050 1.86317 1.34051 1.19244 1.22699 0.96586 0.93116 0.87787 0.93558 1.21631 1.02264 0.98816 0.92845 1.22306 0.98227 0.99692 0.98406 1.21627 0.95118 0.96469 0.89992 0.90035 1.21791 1.02232 0.99249 0.96795 1.60774 1.58412 1.09964 1.01546 1.22582 0.96215 0.97432 0.93015 0.92393 0.92197 0.94326 0.95719 0.95313 0.93068 0.91001 0.91724 0.91344 0.92187 0.92941 0.91878 0.92381 0.84806 0.89908 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 9.52 37.16 0.35 -2.71 16 2 C 0.09 1.94 2.46 -26.73 -0.07 1.87 16 3 H 0.05 0.94 7.65 -51.93 -0.40 0.55 16 4 C 0.02 0.64 4.68 -27.89 -0.13 0.51 16 5 C -0.51 -14.42 8.88 -34.44 -0.31 -14.73 16 6 H 0.06 1.57 7.67 -52.49 -0.40 1.16 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 9 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 O -0.36 -7.56 9.39 -35.23 -0.33 -7.89 16 14 C 0.06 0.97 2.55 -26.65 -0.07 0.90 16 15 H 0.05 0.73 7.63 -51.93 -0.40 0.33 16 16 C -0.12 -1.66 5.65 -26.61 -0.15 -1.82 16 17 C -0.15 -1.64 5.36 -26.65 -0.14 -1.78 16 18 C 0.08 0.91 3.03 -67.72 -0.21 0.70 16 19 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 20 C -0.14 -1.33 9.47 37.16 0.35 -0.98 16 21 N -0.68 -9.13 6.50 -106.76 -0.69 -9.82 16 22 C 0.04 0.61 6.17 -3.83 -0.02 0.59 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.04 0.60 7.97 -51.93 -0.41 0.19 16 26 H 0.02 0.70 8.14 -51.92 -0.42 0.28 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.33 4.05 8.79 -39.29 -0.35 3.70 16 37 H 0.08 1.50 7.92 -51.93 -0.41 1.09 16 38 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 305.06 15.07 4.60 4.60 Total: -1.00 -30.30 305.06 -8.19 -38.50 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -7.00 Total: 0.04 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -0.48 Total: -15.94 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.04 Total: -36.48 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.33 Total: -7.89 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.30 -8.19 -38.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710002339.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.660 kcal (2) G-P(sol) polarization free energy of solvation -30.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds