Wall clock time and date at job start Mon Mar 30 2020 02:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47427 * 2 1 4 4 C 1.53001 * 109.47345 * 119.99818 * 2 1 3 5 5 C 1.50694 * 109.47168 * 184.99962 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 O 1.42903 * 109.47161 * 240.00030 * 2 1 3 14 14 C 1.42898 * 114.00145 * 89.99511 * 13 2 1 15 15 H 1.08998 * 109.50467 * 330.08224 * 14 13 2 16 16 C 1.53113 * 109.50750 * 210.00091 * 14 13 2 17 17 C 1.53112 * 109.16325 * 182.40782 * 16 14 13 18 18 C 1.53040 * 109.27850 * 57.65477 * 17 16 14 19 19 H 1.09001 * 109.46026 * 60.83922 * 18 17 16 20 20 C 1.52999 * 109.46132 * 180.80498 * 18 17 16 21 21 N 1.46847 * 109.52238 * 300.82169 * 18 17 16 22 22 C 1.46842 * 111.19784 * 61.74413 * 21 18 17 23 23 H 1.09001 * 109.47112 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46969 * 299.99825 * 1 2 3 25 25 H 1.08995 * 109.47237 * 60.00111 * 1 2 3 26 26 H 1.09007 * 109.46922 * 64.99664 * 4 2 1 27 27 H 1.09003 * 109.46836 * 305.00420 * 4 2 1 28 28 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 29 29 H 1.09009 * 109.52270 * 302.31866 * 16 14 13 30 30 H 1.09003 * 109.52070 * 62.49883 * 16 14 13 31 31 H 1.09007 * 109.50281 * 177.59879 * 17 16 14 32 32 H 1.08994 * 109.50515 * 297.67390 * 17 16 14 33 33 H 1.08996 * 109.47342 * 59.99691 * 20 18 17 34 34 H 1.08998 * 109.47032 * 180.02562 * 20 18 17 35 35 H 1.09007 * 109.47101 * 300.00061 * 20 18 17 36 36 H 1.00896 * 110.99428 * 297.64418 * 21 18 17 37 37 H 1.08996 * 109.46095 * 178.24259 * 22 21 18 38 38 H 1.09001 * 109.46714 * 58.26809 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0854 0.5396 7 6 4.2305 -1.1935 2.3578 8 7 3.5765 -1.8377 3.2995 9 14 6.0922 -1.0622 2.4360 10 1 6.5873 -1.7621 3.6486 11 1 6.6838 -1.6882 1.2264 12 1 6.4855 0.3685 2.4957 13 8 2.0064 -0.6736 -1.1668 14 6 2.2000 0.1829 -2.2941 15 1 1.4950 1.0127 -2.2460 16 6 1.9696 -0.6095 -3.5838 17 6 2.2376 0.2991 -4.7867 18 6 3.6674 0.8386 -4.7038 19 1 4.3713 0.0066 -4.7263 20 6 3.9331 1.7633 -5.8934 21 7 3.8369 1.5893 -3.4531 22 6 3.6309 0.7257 -2.2834 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 1.7516 -1.7715 1.2056 27 1 1.6054 -0.2617 2.1370 28 1 4.0610 -2.2451 4.0346 29 1 2.6476 -1.4625 -3.6134 30 1 0.9384 -0.9615 -3.6157 31 1 2.1166 -0.2712 -5.7077 32 1 1.5332 1.1309 -4.7786 33 1 3.2290 2.5950 -5.8715 34 1 4.9515 2.1472 -5.8347 35 1 3.8082 1.2059 -6.8218 36 1 3.2220 2.3887 -3.4252 37 1 3.7938 1.3025 -1.3730 38 1 4.3350 -0.1058 -2.3173 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710002339.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:53 Heat of formation + Delta-G solvation = -93.245328 kcal Electronic energy + Delta-G solvation = -16564.391209 eV Core-core repulsion = 14018.778581 eV Total energy + Delta-G solvation = -2545.612628 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.51055 -38.39472 -35.29459 -33.53437 -32.64292 -31.81516 -29.30286 -27.32324 -25.20777 -24.43304 -22.48362 -21.81976 -21.31203 -18.50291 -17.80355 -16.82692 -16.37836 -16.30078 -15.79853 -15.45065 -14.81331 -14.68378 -14.10744 -13.96607 -13.54212 -13.39168 -13.28319 -13.15742 -12.91276 -12.65798 -12.60566 -12.52072 -12.31631 -12.08024 -11.86133 -11.73658 -11.40962 -11.34265 -11.18992 -10.55985 -10.45976 -9.18659 -8.17397 -6.25080 1.38402 1.41439 1.49006 2.41903 2.80598 3.17130 3.35955 3.78343 3.86565 4.01086 4.13747 4.17342 4.21567 4.39796 4.44906 4.48267 4.55793 4.72268 4.79146 4.83743 4.92600 4.96347 5.04020 5.11910 5.19159 5.21655 5.24214 5.30355 5.38617 5.45650 5.54146 5.81927 6.01579 6.25615 6.49210 6.64926 6.87600 7.41622 8.94690 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026945 B = 0.007513 C = 0.006206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.892184 B = 3726.068599 C = 4510.494173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 H 0.049 0.951 4 C 0.027 3.973 5 C -0.521 4.521 6 H 0.057 0.943 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.957 3.043 10 H -0.282 1.282 11 H -0.273 1.273 12 H -0.266 1.266 13 O -0.387 6.387 14 C 0.055 3.945 15 H 0.062 0.938 16 C -0.115 4.115 17 C -0.136 4.136 18 C 0.074 3.926 19 H 0.067 0.933 20 C -0.136 4.136 21 N -0.677 5.677 22 C 0.046 3.954 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.068 0.932 26 H -0.009 1.009 27 H 0.011 0.989 28 H 0.262 0.738 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.346 0.654 37 H 0.061 0.939 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.194 7.396 -17.176 18.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.067 0.933 4 C -0.010 4.010 5 C -0.559 4.559 6 H 0.076 0.924 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.782 3.218 10 H -0.207 1.207 11 H -0.198 1.198 12 H -0.190 1.190 13 O -0.306 6.306 14 C -0.005 4.005 15 H 0.080 0.920 16 C -0.153 4.153 17 C -0.175 4.175 18 C -0.035 4.035 19 H 0.086 0.914 20 C -0.193 4.193 21 N -0.308 5.308 22 C -0.084 4.084 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.009 0.991 27 H 0.030 0.970 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.165 0.835 37 H 0.079 0.921 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.442 7.034 -17.007 18.565 hybrid contribution -0.126 -0.295 0.776 0.840 sum -2.569 6.739 -16.231 17.761 Atomic orbital electron populations 1.22231 0.95424 1.02031 1.02286 1.22142 0.92990 0.95051 0.85685 0.93253 1.19116 0.95581 0.94675 0.91675 1.21482 0.93182 1.33718 1.07510 0.92439 1.25880 1.03292 0.95120 0.95466 1.70080 1.37461 1.37217 1.12888 0.85617 0.79978 0.78728 0.77449 1.20727 1.19824 1.19046 1.87997 1.86676 1.35707 1.20179 1.22953 0.96777 0.93486 0.87247 0.91973 1.21641 1.02171 0.98693 0.92793 1.22249 0.97914 0.99717 0.97647 1.21726 0.95325 0.96597 0.89895 0.91442 1.21734 1.02230 0.99193 0.96150 1.60729 1.58918 1.09947 1.01232 1.22322 0.95737 0.96669 0.93651 0.93097 0.91288 0.91354 0.99103 0.97043 0.92913 0.92622 0.91183 0.89195 0.90690 0.91807 0.92402 0.90612 0.83550 0.92051 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.60 9.52 71.98 0.69 -4.92 16 2 C 0.10 4.22 2.46 30.59 0.08 4.29 16 3 H 0.05 2.04 7.65 -2.39 -0.02 2.02 16 4 C 0.03 1.44 4.68 29.85 0.14 1.58 16 5 C -0.52 -30.44 8.88 25.60 0.23 -30.21 16 6 H 0.06 3.27 7.67 -2.91 -0.02 3.25 16 7 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 8 N -0.94 -58.29 13.29 21.45 0.28 -58.01 16 9 Si 0.96 46.01 29.54 68.60 2.03 48.04 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 13 O -0.39 -16.41 9.39 -148.98 -1.40 -17.81 16 14 C 0.06 1.77 2.55 30.65 0.08 1.85 16 15 H 0.06 1.80 7.63 -2.39 -0.02 1.79 16 16 C -0.12 -3.07 5.65 30.67 0.17 -2.90 16 17 C -0.14 -2.62 5.36 30.65 0.16 -2.46 16 18 C 0.07 1.56 3.03 44.94 0.14 1.70 16 19 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 20 C -0.14 -2.09 9.47 71.98 0.68 -1.41 16 21 N -0.68 -17.24 6.50 -491.67 -3.20 -20.44 16 22 C 0.05 1.53 6.17 86.33 0.53 2.07 16 23 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 25 H 0.07 1.95 7.97 -2.39 -0.02 1.93 16 26 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 27 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 29 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.35 7.55 8.79 -89.70 -0.79 6.76 16 37 H 0.06 2.25 7.92 -2.39 -0.02 2.24 16 38 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -66.46 305.06 1.28 -65.18 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.21 Total: 13.01 kcal Atomic # 6 Polarization: -33.32 SS G_CDS: 3.36 Total: -29.97 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -2.91 Total: -78.45 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -1.40 Total: -17.81 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -66.46 1.28 -65.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710002339.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.068 kcal (2) G-P(sol) polarization free energy of solvation -66.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds