Wall clock time and date at job start Mon Mar 30 2020 03:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.02849 * 2 1 4 4 C 1.54437 * 109.08994 * 240.96005 * 2 1 3 5 5 N 1.44802 * 109.06531 * 163.58417 * 4 2 1 6 6 C 1.46893 * 111.00266 * 219.86433 * 5 4 2 7 7 C 1.53004 * 109.47285 * 170.00108 * 6 5 4 8 8 C 1.50701 * 109.47211 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99761 * 359.97438 * 8 7 6 10 10 C 1.37871 * 119.99694 * 180.27574 * 8 7 6 11 11 N 1.31523 * 119.99908 * 179.72112 * 10 8 7 12 12 Si 1.86800 * 120.00405 * 359.71709 * 10 8 7 13 13 H 1.48500 * 109.47210 * 90.00069 * 12 10 8 14 14 H 1.48504 * 109.47424 * 210.00300 * 12 10 8 15 15 H 1.48502 * 109.46888 * 330.00390 * 12 10 8 16 16 C 1.48056 * 114.17164 * 93.48284 * 5 4 2 17 17 C 1.53373 * 112.16626 * 318.17174 * 16 5 4 18 18 C 1.51029 * 111.73331 * 318.80157 * 17 16 5 19 19 H 1.09005 * 109.77068 * 332.33838 * 18 17 16 20 20 C 1.52997 * 109.76950 * 211.55269 * 18 17 16 21 21 O 1.36481 * 109.09056 * 119.04365 * 2 1 3 22 22 H 1.09007 * 109.47677 * 179.04027 * 1 2 3 23 23 H 1.09008 * 109.47212 * 299.04261 * 1 2 3 24 24 H 1.09005 * 109.47280 * 59.04122 * 1 2 3 25 25 H 1.09001 * 109.54013 * 43.71058 * 4 2 1 26 26 H 1.09006 * 109.60870 * 283.50402 * 4 2 1 27 27 H 1.09000 * 109.47823 * 49.99469 * 6 5 4 28 28 H 1.09007 * 109.47029 * 289.99238 * 6 5 4 29 29 H 1.09000 * 109.47211 * 59.98987 * 7 6 5 30 30 H 1.09007 * 109.46376 * 299.99529 * 7 6 5 31 31 H 0.96995 * 120.00181 * 179.97438 * 11 10 8 32 32 H 1.09002 * 108.94305 * 78.86311 * 16 5 4 33 33 H 1.09006 * 108.94573 * 197.48050 * 16 5 4 34 34 H 1.08999 * 109.02986 * 198.21755 * 17 16 5 35 35 H 1.09000 * 108.96596 * 79.34150 * 17 16 5 36 36 H 1.08991 * 109.47435 * 301.52955 * 20 18 17 37 37 H 1.09005 * 109.46964 * 61.52975 * 20 18 17 38 38 H 1.09006 * 109.46833 * 181.52354 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8853 1.0304 0.0000 4 6 2.0350 -0.7084 -1.2760 5 7 3.4303 -0.3788 -1.4791 6 6 3.7166 -0.1550 -2.9024 7 6 5.1226 0.4292 -3.0541 8 6 5.4165 0.6583 -4.5143 9 1 4.6748 0.4115 -5.2596 10 6 6.6345 1.1771 -4.8992 11 7 6.8931 1.3719 -6.1739 12 14 7.9175 1.6034 -3.6101 13 1 8.7803 0.4208 -3.3604 14 1 8.7522 2.7313 -4.0965 15 1 7.2399 1.9970 -2.3487 16 6 4.3756 -1.3573 -0.8952 17 6 3.9336 -1.8302 0.4953 18 6 3.3972 -0.6909 1.3291 19 1 3.8574 0.2455 1.0135 20 6 3.6992 -0.9446 2.8073 21 8 1.9763 -0.6261 1.1276 22 1 -0.3635 -1.0276 -0.0172 23 1 -0.3634 0.4989 0.8985 24 1 -0.3634 0.5287 -0.8813 25 1 1.4526 -0.3730 -2.1340 26 1 1.9281 -1.7872 -1.1621 27 1 2.9870 0.5422 -3.3146 28 1 3.6570 -1.1023 -3.4384 29 1 5.8521 -0.2680 -2.6419 30 1 5.1821 1.3765 -2.5181 31 1 7.7499 1.7372 -6.4447 32 1 4.4450 -2.2207 -1.5570 33 1 5.3594 -0.8948 -0.8154 34 1 4.7870 -2.2744 1.0075 35 1 3.1553 -2.5848 0.3820 36 1 3.2482 -1.8884 3.1135 37 1 4.7782 -0.9927 2.9547 38 1 3.2865 -0.1331 3.4069 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710003690.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:51 Heat of formation + Delta-G solvation = -53.564681 kcal Electronic energy + Delta-G solvation = -16634.584966 eV Core-core repulsion = 14090.693021 eV Total energy + Delta-G solvation = -2543.891946 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.85805 -36.53154 -34.32139 -33.04400 -31.05855 -29.73218 -28.75623 -25.97786 -24.06957 -22.74027 -21.11283 -20.69196 -19.40663 -16.90424 -16.64231 -16.06345 -15.43739 -14.86909 -14.20380 -13.76391 -13.55911 -13.25842 -13.11709 -12.81992 -12.69134 -12.36885 -12.14402 -11.98314 -11.56288 -11.35228 -11.22041 -10.94213 -10.80020 -10.72036 -10.37438 -9.90997 -9.87103 -9.68239 -9.21885 -9.20530 -8.53461 -7.73109 -6.04938 -4.03065 3.30710 3.38428 3.44040 3.76131 4.23504 4.45529 4.87371 4.98187 5.16250 5.21619 5.29680 5.33880 5.41334 5.45355 5.58772 5.63698 5.70754 5.75131 5.82205 5.94173 6.06811 6.08785 6.10459 6.16954 6.20421 6.29334 6.37234 6.40295 6.75310 7.16338 7.31298 7.58527 7.68775 7.82677 7.85979 8.52608 8.99097 9.57632 11.08504 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033557 B = 0.006820 C = 0.006070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.201867 B = 4104.357221 C = 4611.818357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.105 3.895 3 H 0.052 0.948 4 C 0.027 3.973 5 N -0.560 5.560 6 C 0.077 3.923 7 C -0.008 4.008 8 C -0.521 4.521 9 H 0.070 0.930 10 C 0.067 3.933 11 N -0.904 5.904 12 Si 0.880 3.120 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.263 1.263 16 C 0.061 3.939 17 C -0.149 4.149 18 C 0.100 3.900 19 H 0.073 0.927 20 C -0.144 4.144 21 O -0.384 6.384 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.067 0.933 28 H 0.024 0.976 29 H 0.010 0.990 30 H 0.024 0.976 31 H 0.263 0.737 32 H 0.034 0.966 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.591 -4.831 15.668 18.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.045 3.955 3 H 0.069 0.931 4 C -0.102 4.102 5 N -0.285 5.285 6 C -0.049 4.049 7 C -0.046 4.046 8 C -0.560 4.560 9 H 0.088 0.912 10 C -0.134 4.134 11 N -0.543 5.543 12 Si 0.707 3.293 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.188 1.188 16 C -0.067 4.067 17 C -0.187 4.187 18 C 0.043 3.957 19 H 0.091 0.909 20 C -0.202 4.202 21 O -0.303 6.303 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.060 0.940 27 H 0.086 0.914 28 H 0.043 0.957 29 H 0.029 0.971 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.497 -4.442 15.895 18.563 hybrid contribution 0.882 -0.459 -0.278 1.033 sum -7.615 -4.901 15.617 18.053 Atomic orbital electron populations 1.21792 0.93686 1.02342 1.02170 1.21229 0.93614 0.95695 0.84997 0.93050 1.22743 0.89936 0.98655 0.98868 1.60763 1.02372 1.47119 1.18271 1.22165 1.00172 0.98776 0.83780 1.19586 0.91396 0.96140 0.97468 1.21090 1.01462 1.42466 0.90965 0.91162 1.24996 0.98196 0.95023 0.95149 1.69917 1.23714 1.45576 1.15109 0.86770 0.81621 0.78255 0.82645 1.20399 1.21387 1.18776 1.22331 0.96786 0.93749 0.93785 1.22103 1.01553 0.99000 0.96002 1.21791 0.80675 0.98615 0.94628 0.90859 1.21825 1.01371 1.02379 0.94585 1.86345 1.22981 1.78653 1.42322 0.92324 0.92115 0.91242 0.90839 0.94014 0.91440 0.95721 0.97143 0.95789 0.92733 0.94758 0.90454 0.90655 0.91448 0.92176 0.91211 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.44 37.15 0.35 -1.23 16 2 C 0.10 1.45 3.03 -25.98 -0.08 1.37 16 3 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 4 C 0.03 0.41 4.82 -4.20 -0.02 0.39 16 5 N -0.56 -9.84 3.95 -234.18 -0.92 -10.76 16 6 C 0.08 1.59 4.76 -3.83 -0.02 1.57 16 7 C -0.01 -0.20 3.87 -27.88 -0.11 -0.31 16 8 C -0.52 -15.01 9.66 -34.44 -0.33 -15.34 16 9 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 10 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 11 N -0.90 -28.10 13.96 55.43 0.77 -27.32 16 12 Si 0.88 21.96 27.46 -169.99 -4.67 17.29 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.26 -6.36 6.55 56.52 0.37 -5.99 16 16 C 0.06 0.98 4.81 -2.99 -0.01 0.97 16 17 C -0.15 -1.96 4.94 -27.53 -0.14 -2.10 16 18 C 0.10 1.31 2.90 -27.72 -0.08 1.23 16 19 H 0.07 1.08 7.61 -51.93 -0.40 0.69 16 20 C -0.14 -1.50 9.37 37.16 0.35 -1.15 16 21 O -0.38 -5.45 9.27 -21.29 -0.20 -5.65 16 22 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 23 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 1.07 7.31 -51.93 -0.38 0.69 16 26 H 0.04 0.62 7.01 -51.93 -0.36 0.26 16 27 H 0.07 1.38 7.79 -51.93 -0.40 0.98 16 28 H 0.02 0.51 8.07 -51.93 -0.42 0.10 16 29 H 0.01 0.25 6.12 -51.93 -0.32 -0.07 16 30 H 0.02 0.60 7.21 -51.93 -0.37 0.22 16 31 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 32 H 0.03 0.57 7.99 -51.93 -0.41 0.15 16 33 H 0.08 1.32 6.96 -51.93 -0.36 0.96 16 34 H 0.07 0.85 7.75 -51.93 -0.40 0.45 16 35 H 0.07 0.90 7.29 -51.93 -0.38 0.52 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 292.84 15.07 4.41 4.41 Total: -1.00 -30.69 292.84 -7.55 -38.23 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -6.75 Total: -3.51 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -0.19 Total: -12.70 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: -0.15 Total: -38.09 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.20 Total: -5.65 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.69 -7.55 -38.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710003690.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.332 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds