Wall clock time and date at job start Mon Mar 30 2020 03:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.02849 * 2 1 4 4 C 1.54437 * 109.08994 * 240.96005 * 2 1 3 5 5 N 1.44802 * 109.06531 * 163.58417 * 4 2 1 6 6 C 1.46893 * 111.00266 * 219.86433 * 5 4 2 7 7 C 1.53004 * 109.47285 * 170.00108 * 6 5 4 8 8 C 1.50701 * 109.47211 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99761 * 359.97438 * 8 7 6 10 10 C 1.37871 * 119.99694 * 180.27574 * 8 7 6 11 11 N 1.31523 * 119.99908 * 179.72112 * 10 8 7 12 12 Si 1.86800 * 120.00405 * 359.71709 * 10 8 7 13 13 H 1.48500 * 109.47210 * 90.00069 * 12 10 8 14 14 H 1.48504 * 109.47424 * 210.00300 * 12 10 8 15 15 H 1.48502 * 109.46888 * 330.00390 * 12 10 8 16 16 C 1.48056 * 114.17164 * 93.48284 * 5 4 2 17 17 C 1.53373 * 112.16626 * 318.17174 * 16 5 4 18 18 C 1.51029 * 111.73331 * 318.80157 * 17 16 5 19 19 H 1.09005 * 109.77068 * 332.33838 * 18 17 16 20 20 C 1.52997 * 109.76950 * 211.55269 * 18 17 16 21 21 O 1.36481 * 109.09056 * 119.04365 * 2 1 3 22 22 H 1.09007 * 109.47677 * 179.04027 * 1 2 3 23 23 H 1.09008 * 109.47212 * 299.04261 * 1 2 3 24 24 H 1.09005 * 109.47280 * 59.04122 * 1 2 3 25 25 H 1.09001 * 109.54013 * 43.71058 * 4 2 1 26 26 H 1.09006 * 109.60870 * 283.50402 * 4 2 1 27 27 H 1.09000 * 109.47823 * 49.99469 * 6 5 4 28 28 H 1.09007 * 109.47029 * 289.99238 * 6 5 4 29 29 H 1.09000 * 109.47211 * 59.98987 * 7 6 5 30 30 H 1.09007 * 109.46376 * 299.99529 * 7 6 5 31 31 H 0.96995 * 120.00181 * 179.97438 * 11 10 8 32 32 H 1.09002 * 108.94305 * 78.86311 * 16 5 4 33 33 H 1.09006 * 108.94573 * 197.48050 * 16 5 4 34 34 H 1.08999 * 109.02986 * 198.21755 * 17 16 5 35 35 H 1.09000 * 108.96596 * 79.34150 * 17 16 5 36 36 H 1.08991 * 109.47435 * 301.52955 * 20 18 17 37 37 H 1.09005 * 109.46964 * 61.52975 * 20 18 17 38 38 H 1.09006 * 109.46833 * 181.52354 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8853 1.0304 0.0000 4 6 2.0350 -0.7084 -1.2760 5 7 3.4303 -0.3788 -1.4791 6 6 3.7166 -0.1550 -2.9024 7 6 5.1226 0.4292 -3.0541 8 6 5.4165 0.6583 -4.5143 9 1 4.6748 0.4115 -5.2596 10 6 6.6345 1.1771 -4.8992 11 7 6.8931 1.3719 -6.1739 12 14 7.9175 1.6034 -3.6101 13 1 8.7803 0.4208 -3.3604 14 1 8.7522 2.7313 -4.0965 15 1 7.2399 1.9970 -2.3487 16 6 4.3756 -1.3573 -0.8952 17 6 3.9336 -1.8302 0.4953 18 6 3.3972 -0.6909 1.3291 19 1 3.8574 0.2455 1.0135 20 6 3.6992 -0.9446 2.8073 21 8 1.9763 -0.6261 1.1276 22 1 -0.3635 -1.0276 -0.0172 23 1 -0.3634 0.4989 0.8985 24 1 -0.3634 0.5287 -0.8813 25 1 1.4526 -0.3730 -2.1340 26 1 1.9281 -1.7872 -1.1621 27 1 2.9870 0.5422 -3.3146 28 1 3.6570 -1.1023 -3.4384 29 1 5.8521 -0.2680 -2.6419 30 1 5.1821 1.3765 -2.5181 31 1 7.7499 1.7372 -6.4447 32 1 4.4450 -2.2207 -1.5570 33 1 5.3594 -0.8948 -0.8154 34 1 4.7870 -2.2744 1.0075 35 1 3.1553 -2.5848 0.3820 36 1 3.2482 -1.8884 3.1135 37 1 4.7782 -0.9927 2.9547 38 1 3.2865 -0.1331 3.4069 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710003690.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:49 Heat of formation + Delta-G solvation = -73.316227 kcal Electronic energy + Delta-G solvation = -16635.441458 eV Core-core repulsion = 14090.693021 eV Total energy + Delta-G solvation = -2544.748437 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.00672 -37.93185 -35.37155 -35.10954 -32.74082 -30.97500 -29.96490 -27.46143 -25.55670 -24.01287 -22.50027 -21.99791 -20.83029 -19.04800 -17.76310 -17.25958 -16.79092 -16.26225 -16.11095 -15.16543 -14.94089 -14.73574 -14.45418 -14.25305 -13.76367 -13.65647 -13.32898 -13.08191 -12.94571 -12.81021 -12.54408 -12.32590 -12.23875 -11.90784 -11.81699 -11.58832 -11.52586 -11.37536 -11.25735 -10.77762 -10.36091 -9.14384 -8.32130 -6.36640 1.33612 1.36429 1.49298 2.34467 2.76248 2.88136 3.03333 3.81862 3.90693 3.99301 4.14844 4.19251 4.37537 4.39050 4.47319 4.50142 4.53430 4.72064 4.77921 4.79777 4.81917 4.89547 4.92510 4.99562 5.13335 5.14213 5.23557 5.28607 5.31603 5.40150 5.43892 5.59879 6.07438 6.25943 6.32438 6.70784 6.74768 7.28298 8.84623 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033557 B = 0.006820 C = 0.006070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.201867 B = 4104.357221 C = 4611.818357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.107 3.893 3 H 0.037 0.963 4 C 0.027 3.973 5 N -0.564 5.564 6 C 0.089 3.911 7 C 0.001 3.999 8 C -0.534 4.534 9 H 0.032 0.968 10 C 0.007 3.993 11 N -0.950 5.950 12 Si 0.951 3.049 13 H -0.265 1.265 14 H -0.282 1.282 15 H -0.249 1.249 16 C 0.056 3.944 17 C -0.139 4.139 18 C 0.094 3.906 19 H 0.055 0.945 20 C -0.138 4.138 21 O -0.388 6.388 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.016 0.984 29 H 0.017 0.983 30 H 0.020 0.980 31 H 0.267 0.733 32 H 0.027 0.973 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.497 -5.222 18.279 20.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.047 3.953 3 H 0.055 0.945 4 C -0.102 4.102 5 N -0.289 5.289 6 C -0.038 4.038 7 C -0.037 4.037 8 C -0.573 4.573 9 H 0.050 0.950 10 C -0.190 4.190 11 N -0.591 5.591 12 Si 0.774 3.226 13 H -0.190 1.190 14 H -0.208 1.208 15 H -0.172 1.172 16 C -0.071 4.071 17 C -0.177 4.177 18 C 0.038 3.962 19 H 0.073 0.927 20 C -0.195 4.195 21 O -0.308 6.308 22 H 0.083 0.917 23 H 0.088 0.912 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.425 -4.845 18.524 20.918 hybrid contribution 0.798 -0.357 -1.163 1.455 sum -7.627 -5.201 17.360 19.662 Atomic orbital electron populations 1.21774 0.91456 1.03049 1.03147 1.21236 0.95311 0.94539 0.84248 0.94539 1.22837 0.88393 0.99060 0.99862 1.60729 1.04060 1.48279 1.15844 1.21865 0.97974 0.97962 0.85994 1.19437 0.93762 0.96230 0.94230 1.21411 1.00862 1.42314 0.92700 0.94994 1.25973 1.00727 0.94810 0.97469 1.70063 1.24707 1.46779 1.17502 0.85646 0.78558 0.78483 0.79918 1.19018 1.20769 1.17230 1.22412 0.96166 0.93001 0.95482 1.22049 1.02510 0.98919 0.94210 1.21933 0.80113 0.97692 0.96501 0.92686 1.21806 1.02562 1.02840 0.92305 1.86366 1.23629 1.78540 1.42242 0.91726 0.91235 0.90228 0.90574 0.93676 0.91890 0.96614 0.96468 0.96140 0.92395 0.95417 0.91454 0.88226 0.91368 0.91428 0.89587 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.44 71.98 0.68 -2.06 16 2 C 0.11 2.79 3.03 31.08 0.09 2.88 16 3 H 0.04 1.07 8.13 -2.39 -0.02 1.05 16 4 C 0.03 0.79 4.82 87.18 0.42 1.21 16 5 N -0.56 -19.39 3.95 -894.80 -3.53 -22.92 16 6 C 0.09 3.69 4.76 86.31 0.41 4.10 16 7 C 0.00 0.06 3.87 29.85 0.12 0.17 16 8 C -0.53 -31.48 9.66 25.60 0.25 -31.23 16 9 H 0.03 2.06 7.99 -2.91 -0.02 2.03 16 10 C 0.01 0.43 5.47 84.65 0.46 0.89 16 11 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 12 Si 0.95 44.96 27.46 68.60 1.88 46.84 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 15 H -0.25 -11.09 6.55 99.48 0.65 -10.44 16 16 C 0.06 1.75 4.81 86.21 0.41 2.17 16 17 C -0.14 -3.34 4.94 30.08 0.15 -3.19 16 18 C 0.09 2.28 2.90 29.95 0.09 2.37 16 19 H 0.05 1.54 7.61 -2.38 -0.02 1.52 16 20 C -0.14 -2.45 9.37 71.98 0.67 -1.78 16 21 O -0.39 -10.24 9.27 -99.09 -0.92 -11.16 16 22 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 23 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 25 H 0.08 2.15 7.31 -2.39 -0.02 2.13 16 26 H 0.04 1.28 7.01 -2.38 -0.02 1.27 16 27 H 0.06 2.62 7.79 -2.39 -0.02 2.60 16 28 H 0.02 0.67 8.07 -2.38 -0.02 0.65 16 29 H 0.02 0.81 6.12 -2.39 -0.01 0.79 16 30 H 0.02 1.00 7.21 -2.38 -0.02 0.98 16 31 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 32 H 0.03 0.89 7.99 -2.39 -0.02 0.87 16 33 H 0.07 2.21 6.96 -2.38 -0.02 2.19 16 34 H 0.10 1.92 7.75 -2.39 -0.02 1.90 16 35 H 0.07 1.65 7.29 -2.39 -0.02 1.64 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.09 1.25 8.13 -2.38 -0.02 1.23 16 38 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -66.18 292.84 2.43 -63.75 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: 0.94 Total: 7.88 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 3.76 Total: -24.47 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -3.23 Total: -82.85 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -0.92 Total: -11.16 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.84 kcal Total: -66.18 2.43 -63.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710003690.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.568 kcal (2) G-P(sol) polarization free energy of solvation -66.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds