Wall clock time and date at job start Mon Mar 30 2020 03:21:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 H 1.09000 * 109.02849 * 2 1
4 4 C 1.54437 * 109.08994 * 240.96005 * 2 1 3
5 5 N 1.44802 * 109.06531 * 163.58417 * 4 2 1
6 6 C 1.46893 * 111.00266 * 219.86433 * 5 4 2
7 7 C 1.53004 * 109.47285 * 170.00108 * 6 5 4
8 8 C 1.50701 * 109.47211 * 179.97438 * 7 6 5
9 9 H 1.08002 * 119.99761 * 359.97438 * 8 7 6
10 10 C 1.37871 * 119.99694 * 180.27574 * 8 7 6
11 11 N 1.31523 * 119.99908 * 179.72112 * 10 8 7
12 12 Si 1.86800 * 120.00405 * 359.71709 * 10 8 7
13 13 H 1.48500 * 109.47210 * 90.00069 * 12 10 8
14 14 H 1.48504 * 109.47424 * 210.00300 * 12 10 8
15 15 H 1.48502 * 109.46888 * 330.00390 * 12 10 8
16 16 C 1.48056 * 114.17164 * 93.48284 * 5 4 2
17 17 C 1.53373 * 112.16626 * 318.17174 * 16 5 4
18 18 C 1.51029 * 111.73331 * 318.80157 * 17 16 5
19 19 H 1.09005 * 109.77068 * 332.33838 * 18 17 16
20 20 C 1.52997 * 109.76950 * 211.55269 * 18 17 16
21 21 O 1.36481 * 109.09056 * 119.04365 * 2 1 3
22 22 H 1.09007 * 109.47677 * 179.04027 * 1 2 3
23 23 H 1.09008 * 109.47212 * 299.04261 * 1 2 3
24 24 H 1.09005 * 109.47280 * 59.04122 * 1 2 3
25 25 H 1.09001 * 109.54013 * 43.71058 * 4 2 1
26 26 H 1.09006 * 109.60870 * 283.50402 * 4 2 1
27 27 H 1.09000 * 109.47823 * 49.99469 * 6 5 4
28 28 H 1.09007 * 109.47029 * 289.99238 * 6 5 4
29 29 H 1.09000 * 109.47211 * 59.98987 * 7 6 5
30 30 H 1.09007 * 109.46376 * 299.99529 * 7 6 5
31 31 H 0.96995 * 120.00181 * 179.97438 * 11 10 8
32 32 H 1.09002 * 108.94305 * 78.86311 * 16 5 4
33 33 H 1.09006 * 108.94573 * 197.48050 * 16 5 4
34 34 H 1.08999 * 109.02986 * 198.21755 * 17 16 5
35 35 H 1.09000 * 108.96596 * 79.34150 * 17 16 5
36 36 H 1.08991 * 109.47435 * 301.52955 * 20 18 17
37 37 H 1.09005 * 109.46964 * 61.52975 * 20 18 17
38 38 H 1.09006 * 109.46833 * 181.52354 * 20 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8853 1.0304 0.0000
4 6 2.0350 -0.7084 -1.2760
5 7 3.4303 -0.3788 -1.4791
6 6 3.7166 -0.1550 -2.9024
7 6 5.1226 0.4292 -3.0541
8 6 5.4165 0.6583 -4.5143
9 1 4.6748 0.4115 -5.2596
10 6 6.6345 1.1771 -4.8992
11 7 6.8931 1.3719 -6.1739
12 14 7.9175 1.6034 -3.6101
13 1 8.7803 0.4208 -3.3604
14 1 8.7522 2.7313 -4.0965
15 1 7.2399 1.9970 -2.3487
16 6 4.3756 -1.3573 -0.8952
17 6 3.9336 -1.8302 0.4953
18 6 3.3972 -0.6909 1.3291
19 1 3.8574 0.2455 1.0135
20 6 3.6992 -0.9446 2.8073
21 8 1.9763 -0.6261 1.1276
22 1 -0.3635 -1.0276 -0.0172
23 1 -0.3634 0.4989 0.8985
24 1 -0.3634 0.5287 -0.8813
25 1 1.4526 -0.3730 -2.1340
26 1 1.9281 -1.7872 -1.1621
27 1 2.9870 0.5422 -3.3146
28 1 3.6570 -1.1023 -3.4384
29 1 5.8521 -0.2680 -2.6419
30 1 5.1821 1.3765 -2.5181
31 1 7.7499 1.7372 -6.4447
32 1 4.4450 -2.2207 -1.5570
33 1 5.3594 -0.8948 -0.8154
34 1 4.7870 -2.2744 1.0075
35 1 3.1553 -2.5848 0.3820
36 1 3.2482 -1.8884 3.1135
37 1 4.7782 -0.9927 2.9547
38 1 3.2865 -0.1331 3.4069
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000710003690.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:49
Heat of formation + Delta-G solvation = -73.316227 kcal
Electronic energy + Delta-G solvation = -16635.441458 eV
Core-core repulsion = 14090.693021 eV
Total energy + Delta-G solvation = -2544.748437 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-41.00672 -37.93185 -35.37155 -35.10954 -32.74082 -30.97500 -29.96490 -27.46143
-25.55670 -24.01287 -22.50027 -21.99791 -20.83029 -19.04800 -17.76310 -17.25958
-16.79092 -16.26225 -16.11095 -15.16543 -14.94089 -14.73574 -14.45418 -14.25305
-13.76367 -13.65647 -13.32898 -13.08191 -12.94571 -12.81021 -12.54408 -12.32590
-12.23875 -11.90784 -11.81699 -11.58832 -11.52586 -11.37536 -11.25735 -10.77762
-10.36091 -9.14384 -8.32130 -6.36640 1.33612 1.36429 1.49298 2.34467
2.76248 2.88136 3.03333 3.81862 3.90693 3.99301 4.14844 4.19251
4.37537 4.39050 4.47319 4.50142 4.53430 4.72064 4.77921 4.79777
4.81917 4.89547 4.92510 4.99562 5.13335 5.14213 5.23557 5.28607
5.31603 5.40150 5.43892 5.59879 6.07438 6.25943 6.32438 6.70784
6.74768 7.28298 8.84623
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.033557 B = 0.006820 C = 0.006070
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 834.201867 B = 4104.357221 C = 4611.818357
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C 0.107 3.893
3 H 0.037 0.963
4 C 0.027 3.973
5 N -0.564 5.564
6 C 0.089 3.911
7 C 0.001 3.999
8 C -0.534 4.534
9 H 0.032 0.968
10 C 0.007 3.993
11 N -0.950 5.950
12 Si 0.951 3.049
13 H -0.265 1.265
14 H -0.282 1.282
15 H -0.249 1.249
16 C 0.056 3.944
17 C -0.139 4.139
18 C 0.094 3.906
19 H 0.055 0.945
20 C -0.138 4.138
21 O -0.388 6.388
22 H 0.064 0.936
23 H 0.069 0.931
24 H 0.079 0.921
25 H 0.076 0.924
26 H 0.045 0.955
27 H 0.063 0.937
28 H 0.016 0.984
29 H 0.017 0.983
30 H 0.020 0.980
31 H 0.267 0.733
32 H 0.027 0.973
33 H 0.067 0.933
34 H 0.099 0.901
35 H 0.068 0.932
36 H 0.067 0.933
37 H 0.085 0.915
38 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.497 -5.222 18.279 20.823
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C 0.047 3.953
3 H 0.055 0.945
4 C -0.102 4.102
5 N -0.289 5.289
6 C -0.038 4.038
7 C -0.037 4.037
8 C -0.573 4.573
9 H 0.050 0.950
10 C -0.190 4.190
11 N -0.591 5.591
12 Si 0.774 3.226
13 H -0.190 1.190
14 H -0.208 1.208
15 H -0.172 1.172
16 C -0.071 4.071
17 C -0.177 4.177
18 C 0.038 3.962
19 H 0.073 0.927
20 C -0.195 4.195
21 O -0.308 6.308
22 H 0.083 0.917
23 H 0.088 0.912
24 H 0.098 0.902
25 H 0.094 0.906
26 H 0.063 0.937
27 H 0.081 0.919
28 H 0.034 0.966
29 H 0.035 0.965
30 H 0.039 0.961
31 H 0.076 0.924
32 H 0.046 0.954
33 H 0.085 0.915
34 H 0.118 0.882
35 H 0.086 0.914
36 H 0.086 0.914
37 H 0.104 0.896
38 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -8.425 -4.845 18.524 20.918
hybrid contribution 0.798 -0.357 -1.163 1.455
sum -7.627 -5.201 17.360 19.662
Atomic orbital electron populations
1.21774 0.91456 1.03049 1.03147 1.21236 0.95311 0.94539 0.84248
0.94539 1.22837 0.88393 0.99060 0.99862 1.60729 1.04060 1.48279
1.15844 1.21865 0.97974 0.97962 0.85994 1.19437 0.93762 0.96230
0.94230 1.21411 1.00862 1.42314 0.92700 0.94994 1.25973 1.00727
0.94810 0.97469 1.70063 1.24707 1.46779 1.17502 0.85646 0.78558
0.78483 0.79918 1.19018 1.20769 1.17230 1.22412 0.96166 0.93001
0.95482 1.22049 1.02510 0.98919 0.94210 1.21933 0.80113 0.97692
0.96501 0.92686 1.21806 1.02562 1.02840 0.92305 1.86366 1.23629
1.78540 1.42242 0.91726 0.91235 0.90228 0.90574 0.93676 0.91890
0.96614 0.96468 0.96140 0.92395 0.95417 0.91454 0.88226 0.91368
0.91428 0.89587 0.91857
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.74 9.44 71.98 0.68 -2.06 16
2 C 0.11 2.79 3.03 31.08 0.09 2.88 16
3 H 0.04 1.07 8.13 -2.39 -0.02 1.05 16
4 C 0.03 0.79 4.82 87.18 0.42 1.21 16
5 N -0.56 -19.39 3.95 -894.80 -3.53 -22.92 16
6 C 0.09 3.69 4.76 86.31 0.41 4.10 16
7 C 0.00 0.06 3.87 29.85 0.12 0.17 16
8 C -0.53 -31.48 9.66 25.60 0.25 -31.23 16
9 H 0.03 2.06 7.99 -2.91 -0.02 2.03 16
10 C 0.01 0.43 5.47 84.65 0.46 0.89 16
11 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16
12 Si 0.95 44.96 27.46 68.60 1.88 46.84 16
13 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16
14 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16
15 H -0.25 -11.09 6.55 99.48 0.65 -10.44 16
16 C 0.06 1.75 4.81 86.21 0.41 2.17 16
17 C -0.14 -3.34 4.94 30.08 0.15 -3.19 16
18 C 0.09 2.28 2.90 29.95 0.09 2.37 16
19 H 0.05 1.54 7.61 -2.38 -0.02 1.52 16
20 C -0.14 -2.45 9.37 71.98 0.67 -1.78 16
21 O -0.39 -10.24 9.27 -99.09 -0.92 -11.16 16
22 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16
23 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16
24 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16
25 H 0.08 2.15 7.31 -2.39 -0.02 2.13 16
26 H 0.04 1.28 7.01 -2.38 -0.02 1.27 16
27 H 0.06 2.62 7.79 -2.39 -0.02 2.60 16
28 H 0.02 0.67 8.07 -2.38 -0.02 0.65 16
29 H 0.02 0.81 6.12 -2.39 -0.01 0.79 16
30 H 0.02 1.00 7.21 -2.38 -0.02 0.98 16
31 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16
32 H 0.03 0.89 7.99 -2.39 -0.02 0.87 16
33 H 0.07 2.21 6.96 -2.38 -0.02 2.19 16
34 H 0.10 1.92 7.75 -2.39 -0.02 1.90 16
35 H 0.07 1.65 7.29 -2.39 -0.02 1.64 16
36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16
37 H 0.09 1.25 8.13 -2.38 -0.02 1.23 16
38 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16
Total: -1.00 -66.18 292.84 2.43 -63.75
By element:
Atomic # 1 Polarization: 6.94 SS G_CDS: 0.94 Total: 7.88 kcal
Atomic # 6 Polarization: -28.22 SS G_CDS: 3.76 Total: -24.47 kcal
Atomic # 7 Polarization: -79.62 SS G_CDS: -3.23 Total: -82.85 kcal
Atomic # 8 Polarization: -10.24 SS G_CDS: -0.92 Total: -11.16 kcal
Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.84 kcal
Total: -66.18 2.43 -63.75 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000710003690.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.568 kcal
(2) G-P(sol) polarization free energy of solvation -66.179 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.747 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.748 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.316 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds