Wall clock time and date at job start Mon Mar 30 2020 03:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46734 * 2 1 4 4 C 1.53004 * 109.47161 * 240.00641 * 2 1 3 5 5 C 1.50701 * 109.47211 * 175.00101 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31523 * 119.99908 * 179.72112 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 359.71709 * 7 5 4 10 10 H 1.48500 * 109.47210 * 90.00069 * 9 7 5 11 11 H 1.48504 * 109.47424 * 210.00300 * 9 7 5 12 12 H 1.48502 * 109.46888 * 330.00390 * 9 7 5 13 13 N 1.46900 * 109.47628 * 120.00122 * 2 1 3 14 14 C 1.46907 * 110.99556 * 58.95177 * 13 2 1 15 15 C 1.46897 * 110.99692 * 295.00160 * 13 2 1 16 16 H 1.09002 * 110.75279 * 59.29887 * 15 13 2 17 17 C 1.54381 * 110.85103 * 295.82124 * 15 13 2 18 18 O 1.43231 * 107.59151 * 220.45608 * 17 15 13 19 19 C 1.43653 * 109.97101 * 358.28571 * 18 17 15 20 20 H 1.08991 * 110.31093 * 265.51291 * 19 18 17 21 21 C 1.53003 * 110.30446 * 143.44131 * 19 18 17 22 22 C 1.55200 * 105.25858 * 24.28705 * 19 18 17 23 23 H 1.09004 * 109.46944 * 299.99471 * 1 2 3 24 24 H 1.09001 * 109.47261 * 59.99525 * 1 2 3 25 25 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47211 * 54.99128 * 4 2 1 27 27 H 1.09007 * 109.46376 * 294.99670 * 4 2 1 28 28 H 0.96995 * 120.00181 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.46892 * 60.00560 * 14 13 2 30 30 H 1.09001 * 109.46590 * 180.02562 * 14 13 2 31 31 H 1.08996 * 109.46917 * 300.00138 * 14 13 2 32 32 H 1.09004 * 109.82775 * 339.97522 * 17 15 13 33 33 H 1.08998 * 109.82588 * 100.84974 * 17 15 13 34 34 H 1.08999 * 109.47237 * 61.46089 * 21 19 18 35 35 H 1.09004 * 109.46524 * 181.45283 * 21 19 18 36 36 H 1.08998 * 109.47191 * 301.45329 * 21 19 18 37 37 H 1.09000 * 111.30834 * 205.88206 * 22 19 18 38 38 H 1.09007 * 111.05869 * 81.64158 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2298 -1.1880 -2.3612 8 7 5.5401 -1.0905 -2.4195 9 14 3.3009 -2.1031 -3.6988 10 1 2.9338 -1.1567 -4.7827 11 1 4.1620 -3.1793 -4.2519 12 1 2.0685 -2.7009 -3.1252 13 7 2.0197 -0.6925 1.1994 14 6 1.5283 -2.0762 1.2458 15 6 1.6488 0.0391 2.4180 16 1 0.5661 0.1405 2.4931 17 6 2.3343 1.4218 2.4589 18 8 2.7619 1.6532 3.8062 19 6 2.3719 0.5510 4.6409 20 1 1.4182 0.7617 5.1247 21 6 3.4493 0.2732 5.6912 22 6 2.2273 -0.6585 3.6792 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6052 -0.2616 -2.1370 27 1 1.7516 -1.7714 -1.2057 28 1 6.0241 -1.4941 -3.1568 29 1 1.8763 -2.6151 0.3645 30 1 1.9054 -2.5656 2.1438 31 1 0.4385 -2.0742 1.2639 32 1 3.1960 1.4272 1.7914 33 1 1.6273 2.1941 2.1561 34 1 3.5697 1.1491 6.3286 35 1 3.1517 -0.5808 6.2997 36 1 4.3937 0.0533 5.1935 37 1 1.5300 -1.3974 4.0741 38 1 3.1971 -1.1095 3.4686 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710009752.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:20 Heat of formation + Delta-G solvation = -44.295001 kcal Electronic energy + Delta-G solvation = -16818.968673 eV Core-core repulsion = 14275.478691 eV Total energy + Delta-G solvation = -2543.489982 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.68456 -37.29694 -33.00883 -32.05481 -31.30189 -29.19446 -27.95080 -26.36523 -24.56805 -22.92102 -21.03849 -20.61191 -18.46132 -16.86450 -16.57954 -16.02990 -15.11476 -14.60284 -14.27127 -13.81410 -13.46541 -13.36001 -12.89049 -12.53803 -12.37719 -12.18162 -12.09643 -11.77229 -11.73085 -11.36337 -11.02968 -10.77142 -10.71236 -10.68319 -10.60167 -10.13899 -9.65322 -9.54441 -9.26840 -9.04564 -8.43879 -7.61065 -5.92017 -3.86727 3.33952 3.42115 3.43623 3.94868 4.39819 4.52594 4.66540 4.95776 5.13932 5.33723 5.36925 5.42444 5.46983 5.58390 5.66515 5.72778 5.77660 5.80000 5.88713 5.93536 6.03422 6.06950 6.16192 6.25849 6.29730 6.43465 6.47220 6.56122 6.74720 7.07159 7.22965 7.33537 7.71729 7.76862 7.92261 8.70252 9.20571 9.70525 11.21872 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034131 B = 0.007305 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.160866 B = 3831.902958 C = 4139.003255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.092 3.908 3 H 0.077 0.923 4 C -0.008 4.008 5 C -0.493 4.493 6 H 0.079 0.921 7 C 0.062 3.938 8 N -0.906 5.906 9 Si 0.873 3.127 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.500 5.500 14 C 0.024 3.976 15 C 0.047 3.953 16 H 0.049 0.951 17 C 0.059 3.941 18 O -0.382 6.382 19 C 0.077 3.923 20 H 0.063 0.937 21 C -0.149 4.149 22 C -0.143 4.143 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.014 0.986 27 H 0.019 0.981 28 H 0.260 0.740 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.017 0.983 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.733 0.607 11.829 15.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.016 4.016 3 H 0.095 0.905 4 C -0.046 4.046 5 C -0.531 4.531 6 H 0.097 0.903 7 C -0.138 4.138 8 N -0.546 5.546 9 Si 0.701 3.299 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.194 1.194 13 N -0.224 5.224 14 C -0.124 4.124 15 C -0.062 4.062 16 H 0.066 0.934 17 C -0.018 4.018 18 O -0.301 6.301 19 C 0.019 3.981 20 H 0.081 0.919 21 C -0.207 4.207 22 C -0.181 4.181 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.032 0.968 27 H 0.037 0.963 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.945 0.721 11.763 14.795 hybrid contribution -1.495 -0.716 -0.932 1.902 sum -10.440 0.006 10.831 15.043 Atomic orbital electron populations 1.22559 0.99736 1.01439 1.01048 1.21752 0.89922 0.98777 0.91167 0.90479 1.19718 0.98045 0.95391 0.91412 1.21049 0.89341 1.34126 1.08597 0.90261 1.25015 0.94675 0.96277 0.97788 1.69915 1.06456 1.46118 1.32139 0.86906 0.80143 0.80079 0.82802 1.20570 1.21599 1.19392 1.62201 1.58630 1.01544 1.00030 1.22410 0.96529 0.90494 1.02946 1.23161 0.97104 0.94240 0.91678 0.93376 1.23157 0.99830 0.94919 0.83852 1.88396 1.80267 1.42397 1.19073 1.22896 0.97170 0.86078 0.91954 0.91934 1.21867 0.99215 1.01483 0.98114 1.23410 1.03007 0.97538 0.94138 0.93763 0.92355 0.92776 0.96792 0.96331 0.93040 0.90008 0.92373 0.96486 0.89234 0.92106 0.92182 0.91572 0.91593 0.90710 0.88948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.00 8.51 37.16 0.32 -2.68 16 2 C 0.09 1.77 2.14 -67.71 -0.14 1.62 16 3 H 0.08 1.54 7.00 -51.92 -0.36 1.17 16 4 C -0.01 -0.19 3.33 -27.88 -0.09 -0.29 16 5 C -0.49 -13.82 9.39 -34.44 -0.32 -14.14 16 6 H 0.08 2.44 7.99 -52.49 -0.42 2.02 16 7 C 0.06 1.81 5.47 -17.82 -0.10 1.71 16 8 N -0.91 -28.18 13.96 55.43 0.77 -27.40 16 9 Si 0.87 21.73 27.46 -169.99 -4.67 17.06 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.27 -6.41 6.55 56.52 0.37 -6.04 16 13 N -0.50 -9.19 4.29 -224.57 -0.96 -10.15 16 14 C 0.02 0.41 8.62 60.07 0.52 0.92 16 15 C 0.05 0.73 2.35 -65.77 -0.15 0.58 16 16 H 0.05 0.70 6.50 -51.93 -0.34 0.37 16 17 C 0.06 0.96 6.38 37.88 0.24 1.21 16 18 O -0.38 -6.21 11.04 -35.23 -0.39 -6.60 16 19 C 0.08 1.00 4.07 -25.56 -0.10 0.90 16 20 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 21 C -0.15 -1.67 9.63 37.16 0.36 -1.31 16 22 C -0.14 -1.94 4.79 -24.34 -0.12 -2.06 16 23 H 0.04 0.63 6.53 -51.93 -0.34 0.29 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.05 0.84 6.39 -51.93 -0.33 0.51 16 26 H 0.01 0.32 7.56 -51.93 -0.39 -0.07 16 27 H 0.02 0.44 5.24 -51.93 -0.27 0.16 16 28 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.08 1.55 6.22 -51.93 -0.32 1.23 16 30 H 0.06 0.87 6.93 -51.93 -0.36 0.51 16 31 H 0.02 0.25 6.28 -51.93 -0.33 -0.07 16 32 H 0.09 1.68 7.80 -51.93 -0.40 1.28 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 38 H 0.09 1.40 8.06 -51.93 -0.42 0.98 16 LS Contribution 289.93 15.07 4.37 4.37 Total: -1.00 -30.58 289.93 -6.89 -37.47 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -6.41 Total: -1.21 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 0.40 Total: -13.54 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: -0.19 Total: -37.55 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.39 Total: -6.60 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.58 -6.89 -37.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710009752.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.828 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds