Wall clock time and date at job start Mon Mar 30 2020 03:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46734 * 2 1 4 4 C 1.53004 * 109.47161 * 240.00641 * 2 1 3 5 5 C 1.50701 * 109.47211 * 175.00101 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31523 * 119.99908 * 179.72112 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 359.71709 * 7 5 4 10 10 H 1.48500 * 109.47210 * 90.00069 * 9 7 5 11 11 H 1.48504 * 109.47424 * 210.00300 * 9 7 5 12 12 H 1.48502 * 109.46888 * 330.00390 * 9 7 5 13 13 N 1.46900 * 109.47628 * 120.00122 * 2 1 3 14 14 C 1.46907 * 110.99556 * 58.95177 * 13 2 1 15 15 C 1.46897 * 110.99692 * 295.00160 * 13 2 1 16 16 H 1.09002 * 110.75279 * 59.29887 * 15 13 2 17 17 C 1.54381 * 110.85103 * 295.82124 * 15 13 2 18 18 O 1.43231 * 107.59151 * 220.45608 * 17 15 13 19 19 C 1.43653 * 109.97101 * 358.28571 * 18 17 15 20 20 H 1.08991 * 110.31093 * 265.51291 * 19 18 17 21 21 C 1.53003 * 110.30446 * 143.44131 * 19 18 17 22 22 C 1.55200 * 105.25858 * 24.28705 * 19 18 17 23 23 H 1.09004 * 109.46944 * 299.99471 * 1 2 3 24 24 H 1.09001 * 109.47261 * 59.99525 * 1 2 3 25 25 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47211 * 54.99128 * 4 2 1 27 27 H 1.09007 * 109.46376 * 294.99670 * 4 2 1 28 28 H 0.96995 * 120.00181 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.46892 * 60.00560 * 14 13 2 30 30 H 1.09001 * 109.46590 * 180.02562 * 14 13 2 31 31 H 1.08996 * 109.46917 * 300.00138 * 14 13 2 32 32 H 1.09004 * 109.82775 * 339.97522 * 17 15 13 33 33 H 1.08998 * 109.82588 * 100.84974 * 17 15 13 34 34 H 1.08999 * 109.47237 * 61.46089 * 21 19 18 35 35 H 1.09004 * 109.46524 * 181.45283 * 21 19 18 36 36 H 1.08998 * 109.47191 * 301.45329 * 21 19 18 37 37 H 1.09000 * 111.30834 * 205.88206 * 22 19 18 38 38 H 1.09007 * 111.05869 * 81.64158 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2298 -1.1880 -2.3612 8 7 5.5401 -1.0905 -2.4195 9 14 3.3009 -2.1031 -3.6988 10 1 2.9338 -1.1567 -4.7827 11 1 4.1620 -3.1793 -4.2519 12 1 2.0685 -2.7009 -3.1252 13 7 2.0197 -0.6925 1.1994 14 6 1.5283 -2.0762 1.2458 15 6 1.6488 0.0391 2.4180 16 1 0.5661 0.1405 2.4931 17 6 2.3343 1.4218 2.4589 18 8 2.7619 1.6532 3.8062 19 6 2.3719 0.5510 4.6409 20 1 1.4182 0.7617 5.1247 21 6 3.4493 0.2732 5.6912 22 6 2.2273 -0.6585 3.6792 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6052 -0.2616 -2.1370 27 1 1.7516 -1.7714 -1.2057 28 1 6.0241 -1.4941 -3.1568 29 1 1.8763 -2.6151 0.3645 30 1 1.9054 -2.5656 2.1438 31 1 0.4385 -2.0742 1.2639 32 1 3.1960 1.4272 1.7914 33 1 1.6273 2.1941 2.1561 34 1 3.5697 1.1491 6.3286 35 1 3.1517 -0.5808 6.2997 36 1 4.3937 0.0533 5.1935 37 1 1.5300 -1.3974 4.0741 38 1 3.1971 -1.1095 3.4686 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710009752.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:19 Heat of formation + Delta-G solvation = -65.554709 kcal Electronic energy + Delta-G solvation = -16819.890563 eV Core-core repulsion = 14275.478691 eV Total energy + Delta-G solvation = -2544.411872 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.92100 -38.67457 -34.96432 -33.42704 -32.68612 -30.53149 -29.70475 -27.50386 -25.86047 -24.76877 -22.22179 -21.98333 -19.91751 -18.78892 -18.01365 -17.32669 -16.53962 -16.16822 -15.78005 -15.08437 -14.97039 -14.65820 -14.50043 -14.01660 -13.91536 -13.47605 -13.28030 -13.15463 -12.93393 -12.83336 -12.51464 -12.33419 -12.06589 -12.02244 -11.80789 -11.68446 -11.46315 -11.33770 -11.06123 -10.67344 -10.46394 -8.94008 -8.17131 -6.16692 1.37186 1.38743 1.49570 2.41908 2.77133 3.11105 3.22283 3.50320 3.88384 4.02706 4.17271 4.18501 4.30880 4.31712 4.47084 4.50197 4.57467 4.70716 4.73227 4.78170 4.86554 4.91502 4.95593 5.01497 5.09935 5.13226 5.16878 5.26853 5.28170 5.34067 5.57296 5.75293 6.09227 6.33193 6.39752 6.52529 6.92112 7.44139 9.00460 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034131 B = 0.007305 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.160866 B = 3831.902958 C = 4139.003255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.094 3.906 3 H 0.059 0.941 4 C -0.006 4.006 5 C -0.491 4.491 6 H 0.032 0.968 7 C -0.004 4.004 8 N -0.959 5.959 9 Si 0.945 3.055 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.247 1.247 13 N -0.531 5.531 14 C 0.028 3.972 15 C 0.052 3.948 16 H 0.071 0.929 17 C 0.062 3.938 18 O -0.403 6.403 19 C 0.071 3.929 20 H 0.088 0.912 21 C -0.147 4.147 22 C -0.137 4.137 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.019 0.981 27 H 0.024 0.976 28 H 0.260 0.740 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.046 0.954 37 H 0.105 0.895 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.789 -0.277 12.664 18.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.014 4.014 3 H 0.078 0.922 4 C -0.043 4.043 5 C -0.529 4.529 6 H 0.051 0.949 7 C -0.199 4.199 8 N -0.602 5.602 9 Si 0.770 3.230 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.170 1.170 13 N -0.256 5.256 14 C -0.120 4.120 15 C -0.057 4.057 16 H 0.089 0.911 17 C -0.015 4.015 18 O -0.323 6.323 19 C 0.014 3.986 20 H 0.106 0.894 21 C -0.205 4.205 22 C -0.175 4.175 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.037 0.963 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.065 0.935 37 H 0.123 0.877 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.024 -0.159 12.619 17.431 hybrid contribution -0.459 -0.379 -1.088 1.240 sum -12.483 -0.537 11.531 17.002 Atomic orbital electron populations 1.22414 0.96313 1.02396 1.02508 1.21534 0.92520 0.97253 0.90082 0.92243 1.19666 0.94512 0.96290 0.93868 1.21288 0.92058 1.32614 1.06952 0.94950 1.25974 0.95500 0.97622 1.00788 1.70097 1.08603 1.48040 1.33425 0.85735 0.79272 0.78638 0.79366 1.19579 1.21649 1.17019 1.62057 1.60150 1.02596 1.00795 1.22365 0.97958 0.89294 1.02389 1.23182 0.98138 0.93365 0.91020 0.91116 1.23032 0.98519 0.96402 0.83563 1.88377 1.80824 1.43952 1.19121 1.23196 0.98853 0.84815 0.91754 0.89427 1.21887 0.97871 1.02875 0.97833 1.23398 1.02426 0.98218 0.93434 0.91649 0.91637 0.91949 0.96283 0.95768 0.93079 0.92807 0.90802 0.94050 0.93301 0.90809 0.91603 0.88869 0.93475 0.87683 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.05 8.51 71.98 0.61 -4.44 16 2 C 0.09 3.56 2.14 44.92 0.10 3.66 16 3 H 0.06 2.42 7.00 -2.38 -0.02 2.40 16 4 C -0.01 -0.27 3.33 29.85 0.10 -0.17 16 5 C -0.49 -28.42 9.39 25.60 0.24 -28.18 16 6 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 7 C 0.00 -0.24 5.47 84.65 0.46 0.22 16 8 N -0.96 -61.90 13.96 21.45 0.30 -61.60 16 9 Si 0.95 44.94 27.46 68.60 1.88 46.82 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 12 H -0.25 -10.73 6.55 99.48 0.65 -10.08 16 13 N -0.53 -19.17 4.29 -864.41 -3.71 -22.87 16 14 C 0.03 0.87 8.62 127.69 1.10 1.97 16 15 C 0.05 1.51 2.35 46.18 0.11 1.62 16 16 H 0.07 1.78 6.50 -2.39 -0.02 1.77 16 17 C 0.06 2.02 6.38 72.45 0.46 2.49 16 18 O -0.40 -12.91 11.04 -148.98 -1.65 -14.56 16 19 C 0.07 1.70 4.07 31.35 0.13 1.83 16 20 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 21 C -0.15 -3.04 9.63 71.98 0.69 -2.35 16 22 C -0.14 -3.43 4.79 32.14 0.15 -3.28 16 23 H 0.06 1.59 6.53 -2.38 -0.02 1.58 16 24 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.06 1.68 6.39 -2.39 -0.02 1.67 16 26 H 0.02 0.85 7.56 -2.39 -0.02 0.84 16 27 H 0.02 1.09 5.24 -2.38 -0.01 1.08 16 28 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 29 H 0.05 1.98 6.22 -2.38 -0.01 1.97 16 30 H 0.07 2.05 6.93 -2.39 -0.02 2.03 16 31 H 0.04 1.09 6.28 -2.39 -0.02 1.08 16 32 H 0.05 1.97 7.80 -2.38 -0.02 1.95 16 33 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 37 H 0.10 2.00 8.07 -2.39 -0.02 1.98 16 38 H 0.07 2.06 8.06 -2.38 -0.02 2.04 16 Total: -1.00 -68.74 289.93 1.95 -66.80 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.96 Total: 12.06 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: 4.16 Total: -26.64 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -3.41 Total: -84.47 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -1.65 Total: -14.56 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.82 kcal Total: -68.74 1.95 -66.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710009752.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.241 kcal (2) G-P(sol) polarization free energy of solvation -68.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds