Wall clock time and date at job start Mon Mar 30 2020 04:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47588 * 2 1 4 4 C 1.53002 * 109.46969 * 239.99834 * 2 1 3 5 5 C 1.50705 * 109.46921 * 175.00420 * 4 2 1 6 6 H 1.07998 * 120.00372 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99686 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00024 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99780 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47055 * 89.99968 * 9 7 5 11 11 H 1.48504 * 109.47189 * 209.99988 * 9 7 5 12 12 H 1.48499 * 109.47142 * 329.99721 * 9 7 5 13 13 N 1.46902 * 109.46987 * 120.00225 * 2 1 3 14 14 C 1.46905 * 110.99871 * 274.99776 * 13 2 1 15 15 C 1.53000 * 109.47123 * 180.02562 * 14 13 2 16 16 H 1.09002 * 109.47398 * 59.99875 * 15 14 13 17 17 O 1.42903 * 109.46726 * 299.99631 * 15 14 13 18 18 C 1.53002 * 109.47233 * 180.02562 * 15 14 13 19 19 C 1.53785 * 113.61112 * 277.49499 * 18 15 14 20 20 C 1.53779 * 87.07854 * 220.01691 * 19 18 15 21 21 C 1.53777 * 87.08356 * 25.43282 * 20 19 18 22 22 H 1.09004 * 109.47094 * 299.99962 * 1 2 3 23 23 H 1.08998 * 109.47074 * 59.99626 * 1 2 3 24 24 H 1.08998 * 109.47588 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46717 * 295.00058 * 4 2 1 26 26 H 1.08994 * 109.47218 * 55.00316 * 4 2 1 27 27 H 0.96995 * 119.99898 * 180.02562 * 8 7 5 28 28 H 1.00896 * 111.00682 * 38.94936 * 13 2 1 29 29 H 1.08992 * 109.47078 * 59.99994 * 14 13 2 30 30 H 1.09004 * 109.46829 * 299.99640 * 14 13 2 31 31 H 0.96700 * 114.00234 * 300.00043 * 17 15 14 32 32 H 1.09004 * 112.84805 * 48.79478 * 18 15 14 33 33 H 1.09001 * 113.61651 * 334.56696 * 19 18 15 34 34 H 1.09001 * 113.60934 * 105.46822 * 19 18 15 35 35 H 1.09005 * 113.61342 * 270.88516 * 20 19 18 36 36 H 1.09000 * 113.68803 * 139.99370 * 20 19 18 37 37 H 1.08995 * 113.61914 * 220.02103 * 21 20 19 38 38 H 1.08998 * 113.61402 * 89.11259 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0856 -0.5396 7 6 4.2303 -1.1928 -2.3583 8 7 3.5763 -1.8371 -3.3000 9 14 6.0919 -1.0605 -2.4373 10 1 6.7007 -2.2132 -1.7259 11 1 6.5289 -1.0679 -3.8566 12 1 6.5261 0.2047 -1.7923 13 7 2.0196 -0.6926 1.1994 14 6 2.0824 0.2226 2.3469 15 6 2.5962 -0.5329 3.5742 16 1 3.5916 -0.9264 3.3683 17 8 1.7097 -1.6129 3.8742 18 6 2.6610 0.4200 4.7695 19 6 3.9363 1.2787 4.8042 20 6 3.9543 1.0501 6.3248 21 6 3.1678 -0.2446 6.0604 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.7515 -1.7716 -1.2055 26 1 1.6054 -0.2618 -2.1369 27 1 4.0606 -2.2438 -4.0354 28 1 1.4495 -1.4979 1.4101 29 1 1.0871 0.6163 2.5525 30 1 2.7589 1.0461 2.1182 31 1 0.8038 -1.3359 4.0682 32 1 1.7435 0.9928 4.9043 33 1 4.7813 0.8268 4.2846 34 1 3.7706 2.3181 4.5208 35 1 3.3912 1.7964 6.8852 36 1 4.9517 0.8800 6.7303 37 1 2.3817 -0.4349 6.7910 38 1 3.8026 -1.1129 5.8842 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710010943.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:11 Heat of formation + Delta-G solvation = -50.528982 kcal Electronic energy + Delta-G solvation = -16129.331157 eV Core-core repulsion = 13585.570849 eV Total energy + Delta-G solvation = -2543.760308 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.45159 -36.96673 -35.60403 -32.64033 -30.92791 -28.07625 -27.18634 -25.65132 -24.19173 -22.82785 -21.37824 -19.72109 -19.53147 -16.66391 -16.21497 -15.78999 -15.14791 -14.84895 -14.42910 -14.24586 -13.54455 -13.15448 -12.83078 -12.49451 -12.35971 -11.96709 -11.74769 -11.63617 -11.39248 -11.27824 -10.99033 -10.76972 -10.61774 -10.53905 -10.43775 -10.26316 -9.99577 -9.58241 -9.12637 -8.91713 -8.20284 -7.48641 -5.82674 -3.79897 3.43042 3.48447 3.51860 4.23339 4.51590 4.59692 4.61082 4.74261 4.95826 4.98482 5.29346 5.40335 5.50768 5.56180 5.64511 5.66245 5.73142 5.76522 5.82167 5.89249 5.93648 6.05902 6.09924 6.13478 6.27471 6.44895 6.52445 6.67026 7.07716 7.61554 7.74018 7.79399 8.08896 8.13746 8.26897 8.66189 9.25073 9.80918 11.29631 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025128 B = 0.006468 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.031310 B = 4327.689088 C = 5058.519834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.088 3.912 3 H 0.062 0.938 4 C 0.033 3.967 5 C -0.486 4.486 6 H 0.057 0.943 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.890 3.110 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.276 1.276 13 N -0.660 5.660 14 C 0.032 3.968 15 C 0.118 3.882 16 H 0.107 0.893 17 O -0.556 6.556 18 C -0.145 4.145 19 C -0.132 4.132 20 C -0.146 4.146 21 C -0.125 4.125 22 H 0.035 0.965 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.017 0.983 26 H 0.016 0.984 27 H 0.257 0.743 28 H 0.337 0.663 29 H 0.016 0.984 30 H 0.074 0.926 31 H 0.365 0.635 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.788 5.534 16.893 18.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.021 4.021 3 H 0.080 0.920 4 C -0.005 4.005 5 C -0.525 4.525 6 H 0.075 0.925 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.201 1.201 13 N -0.291 5.291 14 C -0.099 4.099 15 C 0.059 3.941 16 H 0.125 0.875 17 O -0.360 6.360 18 C -0.164 4.164 19 C -0.170 4.170 20 C -0.183 4.183 21 C -0.163 4.163 22 H 0.054 0.946 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.066 0.934 28 H 0.155 0.845 29 H 0.034 0.966 30 H 0.093 0.907 31 H 0.211 0.789 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.536 5.174 16.458 17.437 hybrid contribution -0.454 0.562 0.132 0.734 sum -2.989 5.736 16.590 17.806 Atomic orbital electron populations 1.22553 0.99687 1.01162 1.00419 1.21802 0.89778 0.98042 0.92480 0.92017 1.19114 0.96236 0.95428 0.89699 1.21141 0.91919 1.32745 1.06655 0.92456 1.25009 0.97958 0.95992 0.96064 1.69964 1.35118 1.37098 1.12412 0.86633 0.86546 0.78263 0.76706 1.20903 1.21635 1.20149 1.60447 1.58096 1.08470 1.02054 1.22607 0.98563 0.96531 0.92158 1.22083 0.94743 0.86459 0.90835 0.87546 1.86632 1.22943 1.34366 1.92037 1.23269 0.98689 0.98109 0.96302 1.22867 0.97823 1.00000 0.96300 1.22848 1.00578 0.98175 0.96695 1.22780 0.99641 0.97170 0.96672 0.94631 0.92548 0.93005 0.96489 0.96540 0.93386 0.84481 0.96568 0.90714 0.78924 0.89529 0.89576 0.91495 0.90565 0.91588 0.91883 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 9.16 37.16 0.34 -2.73 16 2 C 0.09 1.82 2.53 -67.71 -0.17 1.65 16 3 H 0.06 1.30 7.80 -51.93 -0.40 0.89 16 4 C 0.03 0.85 4.65 -27.88 -0.13 0.72 16 5 C -0.49 -14.02 8.84 -34.44 -0.30 -14.32 16 6 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -27.97 13.29 55.43 0.74 -27.23 16 9 Si 0.89 22.55 29.54 -169.99 -5.02 17.53 16 10 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.66 -12.62 5.96 -106.72 -0.64 -13.26 16 14 C 0.03 0.48 5.18 -3.82 -0.02 0.46 16 15 C 0.12 1.58 3.01 -26.73 -0.08 1.50 16 16 H 0.11 1.65 7.94 -51.93 -0.41 1.24 16 17 O -0.56 -7.48 12.46 -35.23 -0.44 -7.92 16 18 C -0.14 -1.55 3.33 -89.81 -0.30 -1.85 16 19 C -0.13 -1.38 7.63 -25.92 -0.20 -1.58 16 20 C -0.15 -1.33 8.08 -25.92 -0.21 -1.54 16 21 C -0.13 -1.26 7.44 -25.92 -0.19 -1.45 16 22 H 0.03 0.53 7.45 -51.93 -0.39 0.14 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.05 0.88 8.13 -51.93 -0.42 0.45 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.34 6.27 7.86 -39.29 -0.31 5.96 16 29 H 0.02 0.23 7.43 -51.93 -0.39 -0.16 16 30 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 31 H 0.37 3.62 9.04 45.56 0.41 4.03 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 0.96 7.96 -51.93 -0.41 0.55 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 LS Contribution 308.86 15.07 4.65 4.65 Total: -1.00 -31.31 308.86 -8.15 -39.46 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.09 Total: 4.57 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -1.36 Total: -17.80 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.10 Total: -40.49 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -0.44 Total: -7.92 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.31 -8.15 -39.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710010943.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.071 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds