Wall clock time and date at job start Mon Mar 30 2020 04:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47588 * 2 1 4 4 C 1.53002 * 109.46969 * 239.99834 * 2 1 3 5 5 C 1.50705 * 109.46921 * 175.00420 * 4 2 1 6 6 H 1.07998 * 120.00372 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99686 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00024 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99780 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47055 * 89.99968 * 9 7 5 11 11 H 1.48504 * 109.47189 * 209.99988 * 9 7 5 12 12 H 1.48499 * 109.47142 * 329.99721 * 9 7 5 13 13 N 1.46902 * 109.46987 * 120.00225 * 2 1 3 14 14 C 1.46905 * 110.99871 * 274.99776 * 13 2 1 15 15 C 1.53000 * 109.47123 * 180.02562 * 14 13 2 16 16 H 1.09002 * 109.47398 * 59.99875 * 15 14 13 17 17 O 1.42903 * 109.46726 * 299.99631 * 15 14 13 18 18 C 1.53002 * 109.47233 * 180.02562 * 15 14 13 19 19 C 1.53785 * 113.61112 * 277.49499 * 18 15 14 20 20 C 1.53779 * 87.07854 * 220.01691 * 19 18 15 21 21 C 1.53777 * 87.08356 * 25.43282 * 20 19 18 22 22 H 1.09004 * 109.47094 * 299.99962 * 1 2 3 23 23 H 1.08998 * 109.47074 * 59.99626 * 1 2 3 24 24 H 1.08998 * 109.47588 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46717 * 295.00058 * 4 2 1 26 26 H 1.08994 * 109.47218 * 55.00316 * 4 2 1 27 27 H 0.96995 * 119.99898 * 180.02562 * 8 7 5 28 28 H 1.00896 * 111.00682 * 38.94936 * 13 2 1 29 29 H 1.08992 * 109.47078 * 59.99994 * 14 13 2 30 30 H 1.09004 * 109.46829 * 299.99640 * 14 13 2 31 31 H 0.96700 * 114.00234 * 300.00043 * 17 15 14 32 32 H 1.09004 * 112.84805 * 48.79478 * 18 15 14 33 33 H 1.09001 * 113.61651 * 334.56696 * 19 18 15 34 34 H 1.09001 * 113.60934 * 105.46822 * 19 18 15 35 35 H 1.09005 * 113.61342 * 270.88516 * 20 19 18 36 36 H 1.09000 * 113.68803 * 139.99370 * 20 19 18 37 37 H 1.08995 * 113.61914 * 220.02103 * 21 20 19 38 38 H 1.08998 * 113.61402 * 89.11259 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0856 -0.5396 7 6 4.2303 -1.1928 -2.3583 8 7 3.5763 -1.8371 -3.3000 9 14 6.0919 -1.0605 -2.4373 10 1 6.7007 -2.2132 -1.7259 11 1 6.5289 -1.0679 -3.8566 12 1 6.5261 0.2047 -1.7923 13 7 2.0196 -0.6926 1.1994 14 6 2.0824 0.2226 2.3469 15 6 2.5962 -0.5329 3.5742 16 1 3.5916 -0.9264 3.3683 17 8 1.7097 -1.6129 3.8742 18 6 2.6610 0.4200 4.7695 19 6 3.9363 1.2787 4.8042 20 6 3.9543 1.0501 6.3248 21 6 3.1678 -0.2446 6.0604 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.7515 -1.7716 -1.2055 26 1 1.6054 -0.2618 -2.1369 27 1 4.0606 -2.2438 -4.0354 28 1 1.4495 -1.4979 1.4101 29 1 1.0871 0.6163 2.5525 30 1 2.7589 1.0461 2.1182 31 1 0.8038 -1.3359 4.0682 32 1 1.7435 0.9928 4.9043 33 1 4.7813 0.8268 4.2846 34 1 3.7706 2.3181 4.5208 35 1 3.3912 1.7964 6.8852 36 1 4.9517 0.8800 6.7303 37 1 2.3817 -0.4349 6.7910 38 1 3.8026 -1.1129 5.8842 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710010943.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:11 Heat of formation + Delta-G solvation = -72.747976 kcal Electronic energy + Delta-G solvation = -16130.294645 eV Core-core repulsion = 13585.570849 eV Total energy + Delta-G solvation = -2544.723796 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.38379 -38.29591 -36.85332 -34.74109 -32.43749 -29.51788 -28.88555 -26.45813 -25.47716 -24.65467 -22.50066 -21.36039 -20.43239 -18.40288 -17.65883 -16.93121 -16.56528 -16.16600 -15.92886 -15.69762 -14.77889 -14.50600 -14.31227 -13.83404 -13.55127 -13.31219 -13.23991 -13.09161 -12.85932 -12.64505 -12.47025 -12.35219 -12.20275 -11.90852 -11.78266 -11.33624 -11.25569 -11.10479 -11.08552 -10.49911 -10.39381 -8.95994 -8.09628 -6.14545 1.40400 1.42590 1.52522 2.47235 3.16583 3.26567 3.53246 3.76909 3.90788 3.94965 4.07295 4.21401 4.25240 4.31222 4.48086 4.49732 4.61963 4.77627 4.85193 4.89058 4.90922 4.95420 5.09062 5.12245 5.18952 5.23030 5.29843 5.40030 5.50400 5.64154 5.68298 5.90178 6.34506 6.51495 6.75865 6.93135 6.99436 7.50846 9.02698 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025128 B = 0.006468 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.031310 B = 4327.689088 C = 5058.519834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.098 3.902 3 H 0.057 0.943 4 C 0.036 3.964 5 C -0.499 4.499 6 H 0.055 0.945 7 C -0.008 4.008 8 N -0.941 5.941 9 Si 0.958 3.042 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.265 1.265 13 N -0.682 5.682 14 C 0.037 3.963 15 C 0.127 3.873 16 H 0.078 0.922 17 O -0.570 6.570 18 C -0.137 4.137 19 C -0.139 4.139 20 C -0.136 4.136 21 C -0.125 4.125 22 H 0.066 0.934 23 H 0.055 0.945 24 H 0.051 0.949 25 H -0.012 1.012 26 H -0.008 1.008 27 H 0.259 0.741 28 H 0.338 0.662 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.382 0.618 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.855 6.626 18.748 20.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.012 4.012 3 H 0.076 0.924 4 C -0.001 4.001 5 C -0.537 4.537 6 H 0.073 0.927 7 C -0.204 4.204 8 N -0.584 5.584 9 Si 0.784 3.216 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.190 1.190 13 N -0.313 5.313 14 C -0.093 4.093 15 C 0.068 3.932 16 H 0.096 0.904 17 O -0.376 6.376 18 C -0.156 4.156 19 C -0.177 4.177 20 C -0.174 4.174 21 C -0.163 4.163 22 H 0.085 0.915 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.006 0.994 26 H 0.010 0.990 27 H 0.067 0.933 28 H 0.157 0.843 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.231 0.769 32 H 0.122 0.878 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.616 6.280 18.335 19.556 hybrid contribution -0.462 0.197 -0.442 0.670 sum -3.079 6.476 17.893 19.276 Atomic orbital electron populations 1.22397 0.96692 1.01666 1.01942 1.21466 0.92133 0.96710 0.90852 0.92434 1.19014 0.95189 0.94099 0.91842 1.21482 0.93419 1.32356 1.06451 0.92680 1.25894 1.03060 0.95694 0.95761 1.70096 1.37104 1.38071 1.13098 0.85552 0.80473 0.78630 0.76964 1.20480 1.20988 1.18973 1.60271 1.58575 1.09484 1.03001 1.22620 0.99703 0.95702 0.91230 1.21875 0.93373 0.86666 0.91327 0.90395 1.86596 1.24231 1.34732 1.92041 1.23232 0.99555 0.97665 0.95165 1.22899 0.97250 1.00138 0.97418 1.22831 1.00940 0.97848 0.95735 1.22756 0.99880 0.97103 0.96519 0.91490 0.92575 0.93034 0.99392 0.98981 0.93272 0.84288 0.94134 0.91626 0.76943 0.87756 0.91035 0.90896 0.88976 0.91224 0.90712 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.50 9.16 71.98 0.66 -4.84 16 2 C 0.10 4.03 2.53 44.91 0.11 4.14 16 3 H 0.06 2.39 7.80 -2.39 -0.02 2.37 16 4 C 0.04 1.94 4.65 29.85 0.14 2.08 16 5 C -0.50 -29.26 8.84 25.60 0.23 -29.03 16 6 H 0.05 3.19 7.74 -2.91 -0.02 3.16 16 7 C -0.01 -0.50 5.46 84.66 0.46 -0.04 16 8 N -0.94 -59.35 13.29 21.45 0.28 -59.07 16 9 Si 0.96 46.61 29.54 68.60 2.03 48.64 16 10 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 13 N -0.68 -25.76 5.96 -491.56 -2.93 -28.69 16 14 C 0.04 1.07 5.18 86.30 0.45 1.51 16 15 C 0.13 3.26 3.01 30.60 0.09 3.35 16 16 H 0.08 2.45 7.94 -2.39 -0.02 2.43 16 17 O -0.57 -14.44 12.46 -148.98 -1.86 -16.30 16 18 C -0.14 -2.64 3.33 -10.27 -0.03 -2.67 16 19 C -0.14 -2.69 7.63 31.12 0.24 -2.45 16 20 C -0.14 -2.17 8.08 31.12 0.25 -1.92 16 21 C -0.13 -2.26 7.44 31.12 0.23 -2.02 16 22 H 0.07 1.78 7.45 -2.39 -0.02 1.76 16 23 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 25 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 26 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 27 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 28 H 0.34 12.42 7.86 -89.70 -0.71 11.71 16 29 H 0.04 0.99 7.43 -2.39 -0.02 0.97 16 30 H 0.07 2.02 8.06 -2.39 -0.02 2.00 16 31 H 0.38 6.60 9.04 -74.06 -0.67 5.93 16 32 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.07 1.58 7.96 -2.39 -0.02 1.56 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.07 1.45 8.10 -2.39 -0.02 1.43 16 Total: -1.00 -67.76 308.86 0.00 -67.77 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -0.35 Total: 19.55 kcal Atomic # 6 Polarization: -34.72 SS G_CDS: 2.83 Total: -31.89 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -2.65 Total: -87.76 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -1.86 Total: -16.30 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -67.76 0.00 -67.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710010943.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.982 kcal (2) G-P(sol) polarization free energy of solvation -67.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds