Wall clock time and date at job start Mon Mar 30 2020 03:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47375 * 2 1 4 4 C 1.53002 * 109.47016 * 240.00448 * 2 1 3 5 5 C 1.50703 * 109.47207 * 174.99834 * 4 2 1 6 6 H 1.07994 * 119.99603 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99838 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00380 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99848 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47261 * 239.99776 * 9 7 5 12 12 H 1.48500 * 109.47454 * 119.99769 * 9 7 5 13 13 N 1.46897 * 109.47374 * 120.00353 * 2 1 3 14 14 C 1.46900 * 111.00139 * 274.99776 * 13 2 1 15 15 H 1.09005 * 110.45388 * 32.39891 * 14 13 2 16 16 C 1.54474 * 110.51319 * 269.64225 * 14 13 2 17 17 O 1.44419 * 104.80295 * 217.37299 * 16 14 13 18 18 C 1.44426 * 105.27365 * 40.51560 * 17 16 14 19 19 H 1.08997 * 110.46992 * 78.36762 * 18 17 16 20 20 C 1.53005 * 110.37138 * 200.65755 * 18 17 16 21 21 C 1.54474 * 104.80426 * 319.48307 * 18 17 16 22 22 H 1.09003 * 110.51393 * 142.62213 * 21 18 17 23 23 C 1.53004 * 110.51392 * 265.33893 * 21 18 17 24 24 H 1.08996 * 109.47038 * 59.99570 * 1 2 3 25 25 H 1.08998 * 109.46784 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47141 * 299.99905 * 1 2 3 27 27 H 1.09005 * 109.47493 * 54.99834 * 4 2 1 28 28 H 1.08998 * 109.47006 * 294.99797 * 4 2 1 29 29 H 0.97001 * 119.99667 * 0.02562 * 8 7 5 30 30 H 1.00896 * 110.99853 * 151.04384 * 13 2 1 31 31 H 1.08996 * 110.37284 * 336.21008 * 16 14 13 32 32 H 1.09000 * 110.36911 * 98.54312 * 16 14 13 33 33 H 1.09003 * 109.47042 * 175.38084 * 20 18 17 34 34 H 1.09005 * 109.46774 * 295.37487 * 20 18 17 35 35 H 1.08999 * 109.47108 * 55.37410 * 20 18 17 36 36 H 1.09001 * 109.47335 * 174.63844 * 23 21 18 37 37 H 1.08996 * 109.46964 * 294.64054 * 23 21 18 38 38 H 1.09001 * 109.47301 * 54.64098 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3129 6 1 4.0789 -0.0854 -0.5397 7 6 4.2303 -1.1925 -2.3585 8 7 3.5763 -1.8367 -3.3003 9 14 6.0920 -1.0612 -2.4369 10 1 6.5838 -0.2918 -1.2658 11 1 6.4869 -0.3646 -3.6875 12 1 6.6854 -2.4224 -2.4200 13 7 2.0197 -0.6925 1.1993 14 6 2.0826 0.2225 2.3469 15 1 1.2912 0.9692 2.2824 16 6 3.4677 0.9023 2.4218 17 8 3.7607 0.9880 3.8334 18 6 3.3124 -0.2662 4.3918 19 1 4.0372 -1.0546 4.1888 20 6 3.0859 -0.1276 5.8987 21 6 1.9781 -0.5640 3.6728 22 1 1.8798 -1.6317 3.4767 23 6 0.7968 -0.0591 4.5038 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6054 -0.2616 -2.1371 28 1 1.7516 -1.7714 -1.2057 29 1 2.6096 -1.9051 -3.2594 30 1 2.9173 -1.1205 1.0285 31 1 4.2168 0.2942 1.9149 32 1 3.4255 1.8987 1.9818 33 1 2.6707 -1.0561 6.2906 34 1 4.0356 0.0820 6.3910 35 1 2.3903 0.6900 6.0878 36 1 -0.1268 -0.1912 3.9402 37 1 0.7390 -0.6245 5.4339 38 1 0.9367 0.9981 4.7294 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710011806.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:04 Heat of formation + Delta-G solvation = -89.471029 kcal Electronic energy + Delta-G solvation = -16683.817092 eV Core-core repulsion = 14138.368130 eV Total energy + Delta-G solvation = -2545.448962 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.03080 -38.02517 -35.21490 -34.49567 -32.74811 -29.85899 -28.98310 -27.54700 -25.93422 -25.06310 -22.64496 -21.45629 -20.63170 -18.90618 -17.64288 -17.14643 -16.48179 -16.05845 -15.80563 -15.61720 -14.94754 -14.55893 -14.38955 -13.90293 -13.52036 -13.26206 -13.22844 -13.10228 -12.93888 -12.77523 -12.65458 -12.57138 -12.19343 -11.99741 -11.92200 -11.59657 -11.57757 -11.27928 -10.75889 -10.64968 -10.56685 -9.28123 -8.67904 -6.38345 1.50083 1.58469 1.73606 2.53346 2.80730 3.14556 3.37417 3.66615 3.70271 3.99068 4.05329 4.16062 4.20382 4.41719 4.46852 4.56729 4.57026 4.63778 4.67378 4.78025 4.90133 4.93259 5.00837 5.03751 5.05734 5.14660 5.18479 5.23798 5.32198 5.40443 5.43734 5.83993 5.95954 6.18025 6.28611 6.46222 6.59479 7.42744 8.72884 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028393 B = 0.007615 C = 0.006367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.911252 B = 3676.051432 C = 4396.455195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.101 3.899 3 H 0.025 0.975 4 C 0.010 3.990 5 C -0.606 4.606 6 H 0.050 0.950 7 C -0.035 4.035 8 N -0.938 5.938 9 Si 1.116 2.884 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.279 1.279 13 N -0.670 5.670 14 C 0.063 3.937 15 H 0.089 0.911 16 C 0.020 3.980 17 O -0.387 6.387 18 C 0.063 3.937 19 H 0.061 0.939 20 C -0.140 4.140 21 C -0.109 4.109 22 H 0.088 0.912 23 C -0.131 4.131 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.063 0.937 27 H -0.008 1.008 28 H -0.005 1.005 29 H 0.257 0.743 30 H 0.343 0.657 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.398 3.798 16.532 17.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.009 4.009 3 H 0.043 0.957 4 C -0.027 4.027 5 C -0.644 4.644 6 H 0.068 0.932 7 C -0.233 4.233 8 N -0.576 5.576 9 Si 0.938 3.062 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.205 1.205 13 N -0.302 5.302 14 C -0.048 4.048 15 H 0.107 0.893 16 C -0.059 4.059 17 O -0.306 6.306 18 C 0.005 3.995 19 H 0.079 0.921 20 C -0.197 4.197 21 C -0.129 4.129 22 H 0.106 0.894 23 C -0.188 4.188 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.010 0.990 28 H 0.013 0.987 29 H 0.066 0.934 30 H 0.164 0.836 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.614 3.308 15.933 16.481 hybrid contribution -0.609 0.706 -0.168 0.948 sum -3.223 4.014 15.765 16.584 Atomic orbital electron populations 1.21733 0.94179 1.01607 1.01101 1.21334 0.95171 0.94706 0.89686 0.95724 1.19320 0.95657 0.94583 0.93140 1.22364 0.93113 1.37739 1.11228 0.93219 1.27233 1.10893 0.92777 0.92407 1.70848 1.09806 1.41628 1.35293 0.82932 0.69637 0.77060 0.76524 1.19652 1.20698 1.20508 1.60731 1.33872 1.31542 1.04099 1.23092 0.95961 0.93953 0.91832 0.89306 1.24142 0.96863 1.01831 0.83065 1.89064 1.83797 1.37523 1.20217 1.23250 0.94328 0.85870 0.96032 0.92137 1.21870 1.02676 1.03776 0.91360 1.22508 0.95965 1.01076 0.93310 0.89413 1.21780 0.96035 1.01188 0.99825 0.92855 0.93002 0.91808 0.99012 0.98677 0.93382 0.83615 0.93514 0.89539 0.89137 0.92172 0.91039 0.92649 0.90301 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.37 9.40 71.98 0.68 -3.69 16 2 C 0.10 4.09 2.46 44.92 0.11 4.20 16 3 H 0.02 1.03 7.86 -2.38 -0.02 1.01 16 4 C 0.01 0.53 3.88 29.85 0.12 0.64 16 5 C -0.61 -33.44 8.12 25.60 0.21 -33.23 16 6 H 0.05 2.66 7.49 -2.91 -0.02 2.64 16 7 C -0.04 -2.01 5.46 84.65 0.46 -1.55 16 8 N -0.94 -57.90 13.65 21.45 0.29 -57.60 16 9 Si 1.12 50.39 29.90 68.60 2.05 52.44 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 12 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 13 N -0.67 -24.85 6.06 -464.28 -2.81 -27.67 16 14 C 0.06 1.93 2.84 45.93 0.13 2.06 16 15 H 0.09 2.65 6.80 -2.38 -0.02 2.64 16 16 C 0.02 0.64 7.31 72.48 0.53 1.17 16 17 O -0.39 -12.04 11.34 -148.98 -1.69 -13.73 16 18 C 0.06 1.59 3.84 31.10 0.12 1.70 16 19 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 20 C -0.14 -2.59 8.42 71.98 0.61 -1.98 16 21 C -0.11 -2.78 3.42 -9.78 -0.03 -2.81 16 22 H 0.09 2.35 7.97 -2.39 -0.02 2.33 16 23 C -0.13 -2.62 7.74 71.98 0.56 -2.06 16 24 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.06 1.86 7.50 -2.39 -0.02 1.84 16 27 H -0.01 -0.46 8.01 -2.38 -0.02 -0.48 16 28 H -0.01 -0.28 8.01 -2.39 -0.02 -0.30 16 29 H 0.26 16.07 7.22 -92.71 -0.67 15.40 16 30 H 0.34 14.30 6.56 -89.70 -0.59 13.72 16 31 H 0.05 1.69 7.55 -2.39 -0.02 1.67 16 32 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.09 1.29 7.78 -2.39 -0.02 1.27 16 34 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.07 1.27 6.58 -2.39 -0.02 1.25 16 36 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.24 7.05 -2.39 -0.02 1.22 16 38 H 0.06 1.13 7.45 -2.39 -0.02 1.11 16 Total: -1.00 -62.48 297.83 1.85 -60.63 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.53 Total: 21.47 kcal Atomic # 6 Polarization: -39.02 SS G_CDS: 3.48 Total: -35.54 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -2.52 Total: -85.27 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -1.69 Total: -13.73 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.05 Total: 52.44 kcal Total: -62.48 1.85 -60.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710011806.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.845 kcal (2) G-P(sol) polarization free energy of solvation -62.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds