Wall clock time and date at job start Mon Mar 30 2020 03:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47191 * 2 1 4 4 C 1.53002 * 109.47167 * 239.99880 * 2 1 3 5 5 C 1.50700 * 109.47256 * 175.00044 * 4 2 1 6 6 H 1.07997 * 119.99926 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99928 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00318 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99975 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47142 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47498 * 119.99521 * 9 7 5 12 12 H 1.48499 * 109.47084 * 239.99803 * 9 7 5 13 13 N 1.46901 * 109.47163 * 120.00139 * 2 1 3 14 14 C 1.48536 * 110.99923 * 49.65526 * 13 2 1 15 15 C 1.54936 * 103.22900 * 200.28193 * 14 13 2 16 16 C 1.54598 * 102.92052 * 37.41482 * 15 14 13 17 17 H 1.08995 * 110.31124 * 96.95741 * 16 15 14 18 18 C 1.53003 * 110.38873 * 219.08585 * 16 15 14 19 19 C 1.47903 * 111.00081 * 292.26499 * 13 2 1 20 20 H 1.09004 * 109.91484 * 26.48304 * 19 13 2 21 21 C 1.53004 * 109.91194 * 265.19748 * 19 13 2 22 22 O 1.42901 * 109.47530 * 66.45211 * 21 19 13 23 23 H 1.09000 * 109.46816 * 52.54581 * 1 2 3 24 24 H 1.08997 * 109.47168 * 172.54368 * 1 2 3 25 25 H 1.08998 * 109.47086 * 292.55312 * 1 2 3 26 26 H 1.08997 * 109.47288 * 295.00238 * 4 2 1 27 27 H 1.09000 * 109.46990 * 55.00460 * 4 2 1 28 28 H 0.96997 * 120.00175 * 179.97438 * 8 7 5 29 29 H 1.09006 * 110.66480 * 318.71547 * 14 13 2 30 30 H 1.09000 * 110.66823 * 81.84284 * 14 13 2 31 31 H 1.08997 * 110.72114 * 279.05868 * 15 14 13 32 32 H 1.08993 * 110.87757 * 155.84349 * 15 14 13 33 33 H 1.09005 * 109.46429 * 175.76667 * 18 16 15 34 34 H 1.09000 * 109.46941 * 295.76087 * 18 16 15 35 35 H 1.09000 * 109.47075 * 55.76636 * 18 16 15 36 36 H 1.08997 * 109.46979 * 186.45816 * 21 19 13 37 37 H 1.09003 * 109.46872 * 306.44851 * 21 19 13 38 38 H 0.96699 * 113.99725 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2303 -1.1927 -2.3583 8 7 3.5764 -1.8370 -3.3000 9 14 6.0921 -1.0615 -2.4367 10 1 6.5838 -0.2920 -1.2656 11 1 6.6854 -2.4227 -2.4196 12 1 6.4870 -0.3650 -3.6873 13 7 2.0197 -0.6925 1.1994 14 6 1.3507 -2.0084 1.3647 15 6 1.5651 -2.3291 2.8653 16 6 1.4203 -0.9450 3.5387 17 1 0.4086 -0.8152 3.9229 18 6 2.4403 -0.7928 4.6689 19 6 1.7032 0.0770 2.4222 20 1 0.8220 0.6962 2.2535 21 6 2.8953 0.9548 2.8087 22 8 3.0906 1.9592 1.8112 23 1 -0.3633 0.6250 -0.8158 24 1 -0.3633 -1.0189 -0.1334 25 1 -0.3633 0.3941 0.9491 26 1 1.7517 -1.7715 -1.2056 27 1 1.6055 -0.2617 -2.1370 28 1 4.0607 -2.2431 -4.0358 29 1 0.2878 -1.9310 1.1359 30 1 1.8262 -2.7631 0.7382 31 1 2.5614 -2.7377 3.0338 32 1 0.8013 -3.0165 3.2285 33 1 2.3761 0.2135 5.0830 34 1 2.2276 -1.5218 5.4509 35 1 3.4437 -0.9615 4.2779 36 1 2.6998 1.4302 3.7698 37 1 3.7911 0.3383 2.8839 38 1 3.8320 2.5534 1.9913 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710020776.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:39 Heat of formation + Delta-G solvation = -50.329484 kcal Electronic energy + Delta-G solvation = -17131.648260 eV Core-core repulsion = 14587.896604 eV Total energy + Delta-G solvation = -2543.751657 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.48180 -35.96737 -34.76853 -32.34861 -30.40223 -29.37906 -27.19538 -25.72591 -24.20404 -23.00550 -21.42109 -18.97749 -18.48386 -17.06677 -16.05517 -15.77005 -14.86849 -14.45518 -14.27888 -13.92382 -13.40685 -12.89886 -12.84971 -12.33457 -12.18847 -11.89079 -11.63307 -11.48565 -11.22630 -10.89582 -10.78912 -10.55262 -10.42950 -10.42034 -10.25769 -10.05976 -9.73390 -9.46277 -8.98902 -8.83526 -8.16390 -7.42167 -5.78514 -3.74517 3.43540 3.50388 3.56514 4.55332 4.61565 4.65350 4.88553 5.08797 5.19833 5.56540 5.58045 5.59550 5.62115 5.67781 5.83123 5.87228 5.92719 5.98531 6.04836 6.10818 6.17379 6.24680 6.28241 6.37200 6.54398 6.64896 6.73095 6.88055 7.20221 7.63676 7.75359 7.97801 8.10780 8.15918 8.24957 8.72884 9.32851 9.86064 11.33980 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026220 B = 0.008895 C = 0.008310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.631935 B = 3147.240384 C = 3368.519840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.078 3.922 3 H 0.084 0.916 4 C 0.033 3.967 5 C -0.479 4.479 6 H 0.063 0.937 7 C 0.046 3.954 8 N -0.907 5.907 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.475 5.475 14 C 0.030 3.970 15 C -0.119 4.119 16 C -0.096 4.096 17 H 0.069 0.931 18 C -0.147 4.147 19 C 0.061 3.939 20 H 0.053 0.947 21 C 0.094 3.906 22 O -0.562 6.562 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.039 0.961 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.255 0.745 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.036 0.964 37 H 0.052 0.948 38 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.089 2.819 14.594 15.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.030 4.030 3 H 0.102 0.898 4 C -0.004 4.004 5 C -0.518 4.518 6 H 0.081 0.919 7 C -0.152 4.152 8 N -0.549 5.549 9 Si 0.718 3.282 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.215 1.215 13 N -0.198 5.198 14 C -0.097 4.097 15 C -0.157 4.157 16 C -0.115 4.115 17 H 0.088 0.912 18 C -0.204 4.204 19 C -0.048 4.048 20 H 0.071 0.929 21 C 0.015 3.985 22 O -0.366 6.366 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -4.004 2.374 14.095 14.844 hybrid contribution 0.577 0.351 0.159 0.693 sum -3.428 2.724 14.254 14.911 Atomic orbital electron populations 1.22542 1.00316 1.01196 1.00245 1.22087 0.89549 0.99511 0.91831 0.89792 1.19130 0.96384 0.95040 0.89869 1.21255 0.91865 1.32012 1.06625 0.91897 1.25020 0.97854 0.96190 0.96161 1.69983 1.34926 1.37535 1.12475 0.86585 0.86752 0.77372 0.77537 1.19864 1.21508 1.21537 1.64882 1.53374 1.01283 1.00256 1.23268 0.97423 0.93855 0.95200 1.22582 1.01859 0.95549 0.95697 1.21930 0.98982 0.95522 0.95044 0.91214 1.21945 0.99697 1.01109 0.97622 1.22409 0.96038 0.94472 0.91874 0.92928 1.22340 0.98265 0.89004 0.88843 1.86577 1.54630 1.46061 1.49335 0.92774 0.92839 0.94201 0.96719 0.96651 0.93573 0.93820 0.89632 0.90867 0.91898 0.92683 0.93004 0.91776 0.94555 0.92956 0.78533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.44 8.20 37.16 0.30 -3.13 16 2 C 0.08 1.72 2.15 -67.71 -0.15 1.57 16 3 H 0.08 1.98 6.69 -51.93 -0.35 1.63 16 4 C 0.03 0.88 4.45 -27.88 -0.12 0.75 16 5 C -0.48 -13.96 8.84 -34.44 -0.30 -14.27 16 6 H 0.06 1.86 7.74 -52.49 -0.41 1.45 16 7 C 0.05 1.37 5.46 -17.82 -0.10 1.27 16 8 N -0.91 -28.19 13.29 55.43 0.74 -27.45 16 9 Si 0.89 22.72 29.54 -169.99 -5.02 17.69 16 10 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 N -0.47 -9.45 4.57 -214.66 -0.98 -10.43 16 14 C 0.03 0.54 5.55 -1.90 -0.01 0.53 16 15 C -0.12 -1.70 6.61 -24.87 -0.16 -1.86 16 16 C -0.10 -1.27 3.58 -89.26 -0.32 -1.59 16 17 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 18 C -0.15 -1.63 7.93 37.16 0.29 -1.34 16 19 C 0.06 1.00 2.56 -66.64 -0.17 0.83 16 20 H 0.05 0.89 5.97 -51.93 -0.31 0.58 16 21 C 0.09 1.42 5.51 37.16 0.20 1.63 16 22 O -0.56 -9.46 12.17 -35.23 -0.43 -9.89 16 23 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.05 0.98 6.39 -51.93 -0.33 0.65 16 25 H 0.04 0.67 6.24 -51.93 -0.32 0.34 16 26 H 0.01 0.41 7.07 -51.93 -0.37 0.04 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.04 0.76 5.47 -51.93 -0.28 0.47 16 30 H 0.09 1.73 7.64 -51.93 -0.40 1.33 16 31 H 0.07 1.06 7.85 -51.93 -0.41 0.66 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.55 6.62 -51.93 -0.34 0.21 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.77 6.87 -51.93 -0.36 0.41 16 36 H 0.04 0.45 6.53 -51.93 -0.34 0.11 16 37 H 0.05 0.83 6.97 -51.93 -0.36 0.47 16 38 H 0.37 4.47 9.12 45.56 0.42 4.88 16 LS Contribution 287.92 15.07 4.34 4.34 Total: -1.00 -32.51 287.92 -7.30 -39.81 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.41 Total: 1.53 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -0.53 Total: -15.60 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: -0.25 Total: -37.88 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.43 Total: -9.89 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.51 -7.30 -39.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710020776.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.520 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds