Wall clock time and date at job start Mon Mar 30 2020 03:22:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09002 * 109.47191 * 2 1
4 4 C 1.53002 * 109.47167 * 239.99880 * 2 1 3
5 5 C 1.50700 * 109.47256 * 175.00044 * 4 2 1
6 6 H 1.07997 * 119.99926 * 0.02562 * 5 4 2
7 7 C 1.37874 * 119.99928 * 180.02562 * 5 4 2
8 8 N 1.31515 * 120.00318 * 359.97438 * 7 5 4
9 9 Si 1.86799 * 119.99975 * 180.02562 * 7 5 4
10 10 H 1.48503 * 109.47142 * 359.97438 * 9 7 5
11 11 H 1.48499 * 109.47498 * 119.99521 * 9 7 5
12 12 H 1.48499 * 109.47084 * 239.99803 * 9 7 5
13 13 N 1.46901 * 109.47163 * 120.00139 * 2 1 3
14 14 C 1.48536 * 110.99923 * 49.65526 * 13 2 1
15 15 C 1.54936 * 103.22900 * 200.28193 * 14 13 2
16 16 C 1.54598 * 102.92052 * 37.41482 * 15 14 13
17 17 H 1.08995 * 110.31124 * 96.95741 * 16 15 14
18 18 C 1.53003 * 110.38873 * 219.08585 * 16 15 14
19 19 C 1.47903 * 111.00081 * 292.26499 * 13 2 1
20 20 H 1.09004 * 109.91484 * 26.48304 * 19 13 2
21 21 C 1.53004 * 109.91194 * 265.19748 * 19 13 2
22 22 O 1.42901 * 109.47530 * 66.45211 * 21 19 13
23 23 H 1.09000 * 109.46816 * 52.54581 * 1 2 3
24 24 H 1.08997 * 109.47168 * 172.54368 * 1 2 3
25 25 H 1.08998 * 109.47086 * 292.55312 * 1 2 3
26 26 H 1.08997 * 109.47288 * 295.00238 * 4 2 1
27 27 H 1.09000 * 109.46990 * 55.00460 * 4 2 1
28 28 H 0.96997 * 120.00175 * 179.97438 * 8 7 5
29 29 H 1.09006 * 110.66480 * 318.71547 * 14 13 2
30 30 H 1.09000 * 110.66823 * 81.84284 * 14 13 2
31 31 H 1.08997 * 110.72114 * 279.05868 * 15 14 13
32 32 H 1.08993 * 110.87757 * 155.84349 * 15 14 13
33 33 H 1.09005 * 109.46429 * 175.76667 * 18 16 15
34 34 H 1.09000 * 109.46941 * 295.76087 * 18 16 15
35 35 H 1.09000 * 109.47075 * 55.76636 * 18 16 15
36 36 H 1.08997 * 109.46979 * 186.45816 * 21 19 13
37 37 H 1.09003 * 109.46872 * 306.44851 * 21 19 13
38 38 H 0.96699 * 113.99725 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7213 -1.2492
5 6 3.5420 -0.6150 -1.3127
6 1 4.0790 -0.0862 -0.5392
7 6 4.2303 -1.1927 -2.3583
8 7 3.5764 -1.8370 -3.3000
9 14 6.0921 -1.0615 -2.4367
10 1 6.5838 -0.2920 -1.2656
11 1 6.6854 -2.4227 -2.4196
12 1 6.4870 -0.3650 -3.6873
13 7 2.0197 -0.6925 1.1994
14 6 1.3507 -2.0084 1.3647
15 6 1.5651 -2.3291 2.8653
16 6 1.4203 -0.9450 3.5387
17 1 0.4086 -0.8152 3.9229
18 6 2.4403 -0.7928 4.6689
19 6 1.7032 0.0770 2.4222
20 1 0.8220 0.6962 2.2535
21 6 2.8953 0.9548 2.8087
22 8 3.0906 1.9592 1.8112
23 1 -0.3633 0.6250 -0.8158
24 1 -0.3633 -1.0189 -0.1334
25 1 -0.3633 0.3941 0.9491
26 1 1.7517 -1.7715 -1.2056
27 1 1.6055 -0.2617 -2.1370
28 1 4.0607 -2.2431 -4.0358
29 1 0.2878 -1.9310 1.1359
30 1 1.8262 -2.7631 0.7382
31 1 2.5614 -2.7377 3.0338
32 1 0.8013 -3.0165 3.2285
33 1 2.3761 0.2135 5.0830
34 1 2.2276 -1.5218 5.4509
35 1 3.4437 -0.9615 4.2779
36 1 2.6998 1.4302 3.7698
37 1 3.7911 0.3383 2.8839
38 1 3.8320 2.5534 1.9913
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000710020776.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:22:37
Heat of formation + Delta-G solvation = -74.540179 kcal
Electronic energy + Delta-G solvation = -17132.698115 eV
Core-core repulsion = 14587.896604 eV
Total energy + Delta-G solvation = -2544.801511 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.82950 -37.29003 -36.29380 -34.44746 -31.76201 -30.83150 -29.14796 -26.96281
-25.42859 -25.01574 -22.91857 -20.42329 -19.84274 -18.37447 -18.26184 -17.18186
-16.45702 -16.15014 -15.74996 -15.28731 -14.69787 -14.50649 -14.05935 -13.91991
-13.62394 -13.47043 -13.35494 -13.04561 -12.73645 -12.55699 -12.37067 -12.26920
-12.13614 -11.72013 -11.55603 -11.50844 -11.21848 -11.07215 -11.00168 -10.56365
-10.47805 -8.92790 -8.08601 -6.12680 1.39930 1.40303 1.54467 2.48007
3.18122 3.30345 3.43722 3.76289 3.97457 4.05763 4.22106 4.40685
4.47516 4.48996 4.50749 4.56789 4.65737 4.72010 4.84112 4.87044
4.95552 5.03968 5.10050 5.18083 5.22525 5.25171 5.35286 5.37013
5.47730 5.54383 5.76169 5.92090 6.35268 6.39606 6.58708 7.01099
7.08147 7.52358 9.04091
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.026220 B = 0.008895 C = 0.008310
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1067.631935 B = 3147.240384 C = 3368.519840
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C 0.090 3.910
3 H 0.066 0.934
4 C 0.041 3.959
5 C -0.490 4.490
6 H 0.056 0.944
7 C -0.010 4.010
8 N -0.943 5.943
9 Si 0.959 3.041
10 H -0.265 1.265
11 H -0.282 1.282
12 H -0.282 1.282
13 N -0.500 5.500
14 C 0.026 3.974
15 C -0.110 4.110
16 C -0.088 4.088
17 H 0.091 0.909
18 C -0.142 4.142
19 C 0.056 3.944
20 H 0.049 0.951
21 C 0.093 3.907
22 O -0.591 6.591
23 H 0.054 0.946
24 H 0.053 0.947
25 H 0.064 0.936
26 H -0.009 1.009
27 H -0.015 1.015
28 H 0.258 0.742
29 H 0.050 0.950
30 H 0.049 0.951
31 H 0.067 0.933
32 H 0.090 0.910
33 H 0.070 0.930
34 H 0.070 0.930
35 H 0.050 0.950
36 H 0.073 0.927
37 H 0.042 0.958
38 H 0.387 0.613
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.881 3.260 17.032 17.771
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.233 4.233
2 C -0.019 4.019
3 H 0.084 0.916
4 C 0.004 3.996
5 C -0.528 4.528
6 H 0.074 0.926
7 C -0.205 4.205
8 N -0.586 5.586
9 Si 0.785 3.215
10 H -0.190 1.190
11 H -0.208 1.208
12 H -0.208 1.208
13 N -0.223 5.223
14 C -0.102 4.102
15 C -0.148 4.148
16 C -0.107 4.107
17 H 0.110 0.890
18 C -0.199 4.199
19 C -0.053 4.053
20 H 0.067 0.933
21 C 0.015 3.985
22 O -0.398 6.398
23 H 0.073 0.927
24 H 0.072 0.928
25 H 0.083 0.917
26 H 0.009 0.991
27 H 0.003 0.997
28 H 0.066 0.934
29 H 0.068 0.932
30 H 0.067 0.933
31 H 0.086 0.914
32 H 0.108 0.892
33 H 0.089 0.911
34 H 0.089 0.911
35 H 0.069 0.931
36 H 0.091 0.909
37 H 0.060 0.940
38 H 0.235 0.765
Dipole moment (debyes) X Y Z Total
from point charges -3.791 2.827 16.554 17.216
hybrid contribution 0.498 0.217 -0.618 0.823
sum -3.292 3.044 15.936 16.555
Atomic orbital electron populations
1.22402 0.97789 1.01449 1.01632 1.21681 0.91521 0.97699 0.90986
0.91624 1.18970 0.95450 0.93837 0.91387 1.21481 0.93133 1.31763
1.06428 0.92592 1.25903 1.03099 0.95783 0.95759 1.70113 1.36998
1.38373 1.13131 0.85473 0.80464 0.77625 0.77897 1.18954 1.20846
1.20751 1.64731 1.54331 1.02335 1.00912 1.23249 0.97102 0.92291
0.97530 1.22549 1.02491 0.96990 0.92760 1.21949 1.00926 0.93309
0.94503 0.89032 1.21910 0.98158 1.02730 0.97136 1.22594 0.96428
0.95029 0.91234 0.93345 1.22442 0.97351 0.88739 0.89939 1.86530
1.55822 1.46833 1.50634 0.92729 0.92809 0.91722 0.99106 0.99666
0.93356 0.93199 0.93261 0.91444 0.89193 0.91101 0.91086 0.93063
0.90920 0.93998 0.76508
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -6.45 8.20 71.98 0.59 -5.86 16
2 C 0.09 4.03 2.15 44.92 0.10 4.13 16
3 H 0.07 3.17 6.69 -2.39 -0.02 3.15 16
4 C 0.04 2.28 4.45 29.85 0.13 2.41 16
5 C -0.49 -29.41 8.84 25.60 0.23 -29.18 16
6 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16
7 C -0.01 -0.62 5.46 84.65 0.46 -0.16 16
8 N -0.94 -60.13 13.29 21.45 0.28 -59.84 16
9 Si 0.96 47.24 29.54 68.60 2.03 49.26 16
10 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16
11 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16
12 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16
13 N -0.50 -19.91 4.57 -833.06 -3.81 -23.72 16
14 C 0.03 0.94 5.55 86.65 0.48 1.42 16
15 C -0.11 -2.91 6.61 31.80 0.21 -2.70 16
16 C -0.09 -2.05 3.58 -9.91 -0.04 -2.08 16
17 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16
18 C -0.14 -2.64 7.93 71.98 0.57 -2.06 16
19 C 0.06 1.72 2.56 45.06 0.12 1.84 16
20 H 0.05 1.54 5.97 -2.39 -0.01 1.52 16
21 C 0.09 2.64 5.51 71.98 0.40 3.03 16
22 O -0.59 -19.32 12.17 -148.98 -1.81 -21.14 16
23 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16
24 H 0.05 1.97 6.39 -2.39 -0.02 1.95 16
25 H 0.06 2.07 6.24 -2.39 -0.01 2.05 16
26 H -0.01 -0.56 7.07 -2.39 -0.02 -0.58 16
27 H -0.01 -0.91 8.14 -2.39 -0.02 -0.92 16
28 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16
29 H 0.05 1.71 5.47 -2.38 -0.01 1.69 16
30 H 0.05 2.09 7.64 -2.39 -0.02 2.07 16
31 H 0.07 1.86 7.85 -2.39 -0.02 1.84 16
32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16
33 H 0.07 1.10 6.62 -2.38 -0.02 1.08 16
34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16
35 H 0.05 1.09 6.87 -2.39 -0.02 1.08 16
36 H 0.07 1.53 6.53 -2.39 -0.02 1.52 16
37 H 0.04 1.27 6.97 -2.39 -0.02 1.25 16
38 H 0.39 8.93 9.12 -74.06 -0.68 8.25 16
Total: -1.00 -71.76 287.92 0.30 -71.46
By element:
Atomic # 1 Polarization: 12.83 SS G_CDS: 0.36 Total: 13.20 kcal
Atomic # 6 Polarization: -32.47 SS G_CDS: 3.25 Total: -29.23 kcal
Atomic # 7 Polarization: -80.03 SS G_CDS: -3.53 Total: -83.56 kcal
Atomic # 8 Polarization: -19.32 SS G_CDS: -1.81 Total: -21.14 kcal
Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.26 kcal
Total: -71.76 0.30 -71.46 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000710020776.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.080 kcal
(2) G-P(sol) polarization free energy of solvation -71.757 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.837 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.297 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.460 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.540 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds