Wall clock time and date at job start Mon Mar 30 2020 03:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47191 * 2 1 4 4 C 1.53002 * 109.47167 * 239.99880 * 2 1 3 5 5 C 1.50700 * 109.47256 * 175.00044 * 4 2 1 6 6 H 1.07997 * 119.99926 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99928 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00318 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99975 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47142 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47498 * 119.99521 * 9 7 5 12 12 H 1.48499 * 109.47084 * 239.99803 * 9 7 5 13 13 N 1.46901 * 109.47163 * 120.00139 * 2 1 3 14 14 C 1.48536 * 110.99923 * 49.65526 * 13 2 1 15 15 C 1.54936 * 103.22900 * 200.28193 * 14 13 2 16 16 C 1.54598 * 102.92052 * 37.41482 * 15 14 13 17 17 H 1.08995 * 110.31124 * 96.95741 * 16 15 14 18 18 C 1.53003 * 110.38873 * 219.08585 * 16 15 14 19 19 C 1.47903 * 111.00081 * 292.26499 * 13 2 1 20 20 H 1.09004 * 109.91484 * 26.48304 * 19 13 2 21 21 C 1.53004 * 109.91194 * 265.19748 * 19 13 2 22 22 O 1.42901 * 109.47530 * 66.45211 * 21 19 13 23 23 H 1.09000 * 109.46816 * 52.54581 * 1 2 3 24 24 H 1.08997 * 109.47168 * 172.54368 * 1 2 3 25 25 H 1.08998 * 109.47086 * 292.55312 * 1 2 3 26 26 H 1.08997 * 109.47288 * 295.00238 * 4 2 1 27 27 H 1.09000 * 109.46990 * 55.00460 * 4 2 1 28 28 H 0.96997 * 120.00175 * 179.97438 * 8 7 5 29 29 H 1.09006 * 110.66480 * 318.71547 * 14 13 2 30 30 H 1.09000 * 110.66823 * 81.84284 * 14 13 2 31 31 H 1.08997 * 110.72114 * 279.05868 * 15 14 13 32 32 H 1.08993 * 110.87757 * 155.84349 * 15 14 13 33 33 H 1.09005 * 109.46429 * 175.76667 * 18 16 15 34 34 H 1.09000 * 109.46941 * 295.76087 * 18 16 15 35 35 H 1.09000 * 109.47075 * 55.76636 * 18 16 15 36 36 H 1.08997 * 109.46979 * 186.45816 * 21 19 13 37 37 H 1.09003 * 109.46872 * 306.44851 * 21 19 13 38 38 H 0.96699 * 113.99725 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2303 -1.1927 -2.3583 8 7 3.5764 -1.8370 -3.3000 9 14 6.0921 -1.0615 -2.4367 10 1 6.5838 -0.2920 -1.2656 11 1 6.6854 -2.4227 -2.4196 12 1 6.4870 -0.3650 -3.6873 13 7 2.0197 -0.6925 1.1994 14 6 1.3507 -2.0084 1.3647 15 6 1.5651 -2.3291 2.8653 16 6 1.4203 -0.9450 3.5387 17 1 0.4086 -0.8152 3.9229 18 6 2.4403 -0.7928 4.6689 19 6 1.7032 0.0770 2.4222 20 1 0.8220 0.6962 2.2535 21 6 2.8953 0.9548 2.8087 22 8 3.0906 1.9592 1.8112 23 1 -0.3633 0.6250 -0.8158 24 1 -0.3633 -1.0189 -0.1334 25 1 -0.3633 0.3941 0.9491 26 1 1.7517 -1.7715 -1.2056 27 1 1.6055 -0.2617 -2.1370 28 1 4.0607 -2.2431 -4.0358 29 1 0.2878 -1.9310 1.1359 30 1 1.8262 -2.7631 0.7382 31 1 2.5614 -2.7377 3.0338 32 1 0.8013 -3.0165 3.2285 33 1 2.3761 0.2135 5.0830 34 1 2.2276 -1.5218 5.4509 35 1 3.4437 -0.9615 4.2779 36 1 2.6998 1.4302 3.7698 37 1 3.7911 0.3383 2.8839 38 1 3.8320 2.5534 1.9913 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710020776.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:37 Heat of formation + Delta-G solvation = -74.540179 kcal Electronic energy + Delta-G solvation = -17132.698115 eV Core-core repulsion = 14587.896604 eV Total energy + Delta-G solvation = -2544.801511 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.82950 -37.29003 -36.29380 -34.44746 -31.76201 -30.83150 -29.14796 -26.96281 -25.42859 -25.01574 -22.91857 -20.42329 -19.84274 -18.37447 -18.26184 -17.18186 -16.45702 -16.15014 -15.74996 -15.28731 -14.69787 -14.50649 -14.05935 -13.91991 -13.62394 -13.47043 -13.35494 -13.04561 -12.73645 -12.55699 -12.37067 -12.26920 -12.13614 -11.72013 -11.55603 -11.50844 -11.21848 -11.07215 -11.00168 -10.56365 -10.47805 -8.92790 -8.08601 -6.12680 1.39930 1.40303 1.54467 2.48007 3.18122 3.30345 3.43722 3.76289 3.97457 4.05763 4.22106 4.40685 4.47516 4.48996 4.50749 4.56789 4.65737 4.72010 4.84112 4.87044 4.95552 5.03968 5.10050 5.18083 5.22525 5.25171 5.35286 5.37013 5.47730 5.54383 5.76169 5.92090 6.35268 6.39606 6.58708 7.01099 7.08147 7.52358 9.04091 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026220 B = 0.008895 C = 0.008310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.631935 B = 3147.240384 C = 3368.519840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.090 3.910 3 H 0.066 0.934 4 C 0.041 3.959 5 C -0.490 4.490 6 H 0.056 0.944 7 C -0.010 4.010 8 N -0.943 5.943 9 Si 0.959 3.041 10 H -0.265 1.265 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.500 5.500 14 C 0.026 3.974 15 C -0.110 4.110 16 C -0.088 4.088 17 H 0.091 0.909 18 C -0.142 4.142 19 C 0.056 3.944 20 H 0.049 0.951 21 C 0.093 3.907 22 O -0.591 6.591 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.064 0.936 26 H -0.009 1.009 27 H -0.015 1.015 28 H 0.258 0.742 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.042 0.958 38 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.881 3.260 17.032 17.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.019 4.019 3 H 0.084 0.916 4 C 0.004 3.996 5 C -0.528 4.528 6 H 0.074 0.926 7 C -0.205 4.205 8 N -0.586 5.586 9 Si 0.785 3.215 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.223 5.223 14 C -0.102 4.102 15 C -0.148 4.148 16 C -0.107 4.107 17 H 0.110 0.890 18 C -0.199 4.199 19 C -0.053 4.053 20 H 0.067 0.933 21 C 0.015 3.985 22 O -0.398 6.398 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.009 0.991 27 H 0.003 0.997 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -3.791 2.827 16.554 17.216 hybrid contribution 0.498 0.217 -0.618 0.823 sum -3.292 3.044 15.936 16.555 Atomic orbital electron populations 1.22402 0.97789 1.01449 1.01632 1.21681 0.91521 0.97699 0.90986 0.91624 1.18970 0.95450 0.93837 0.91387 1.21481 0.93133 1.31763 1.06428 0.92592 1.25903 1.03099 0.95783 0.95759 1.70113 1.36998 1.38373 1.13131 0.85473 0.80464 0.77625 0.77897 1.18954 1.20846 1.20751 1.64731 1.54331 1.02335 1.00912 1.23249 0.97102 0.92291 0.97530 1.22549 1.02491 0.96990 0.92760 1.21949 1.00926 0.93309 0.94503 0.89032 1.21910 0.98158 1.02730 0.97136 1.22594 0.96428 0.95029 0.91234 0.93345 1.22442 0.97351 0.88739 0.89939 1.86530 1.55822 1.46833 1.50634 0.92729 0.92809 0.91722 0.99106 0.99666 0.93356 0.93199 0.93261 0.91444 0.89193 0.91101 0.91086 0.93063 0.90920 0.93998 0.76508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.45 8.20 71.98 0.59 -5.86 16 2 C 0.09 4.03 2.15 44.92 0.10 4.13 16 3 H 0.07 3.17 6.69 -2.39 -0.02 3.15 16 4 C 0.04 2.28 4.45 29.85 0.13 2.41 16 5 C -0.49 -29.41 8.84 25.60 0.23 -29.18 16 6 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 7 C -0.01 -0.62 5.46 84.65 0.46 -0.16 16 8 N -0.94 -60.13 13.29 21.45 0.28 -59.84 16 9 Si 0.96 47.24 29.54 68.60 2.03 49.26 16 10 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 12 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 13 N -0.50 -19.91 4.57 -833.06 -3.81 -23.72 16 14 C 0.03 0.94 5.55 86.65 0.48 1.42 16 15 C -0.11 -2.91 6.61 31.80 0.21 -2.70 16 16 C -0.09 -2.05 3.58 -9.91 -0.04 -2.08 16 17 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 18 C -0.14 -2.64 7.93 71.98 0.57 -2.06 16 19 C 0.06 1.72 2.56 45.06 0.12 1.84 16 20 H 0.05 1.54 5.97 -2.39 -0.01 1.52 16 21 C 0.09 2.64 5.51 71.98 0.40 3.03 16 22 O -0.59 -19.32 12.17 -148.98 -1.81 -21.14 16 23 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.05 1.97 6.39 -2.39 -0.02 1.95 16 25 H 0.06 2.07 6.24 -2.39 -0.01 2.05 16 26 H -0.01 -0.56 7.07 -2.39 -0.02 -0.58 16 27 H -0.01 -0.91 8.14 -2.39 -0.02 -0.92 16 28 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 29 H 0.05 1.71 5.47 -2.38 -0.01 1.69 16 30 H 0.05 2.09 7.64 -2.39 -0.02 2.07 16 31 H 0.07 1.86 7.85 -2.39 -0.02 1.84 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 1.10 6.62 -2.38 -0.02 1.08 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.05 1.09 6.87 -2.39 -0.02 1.08 16 36 H 0.07 1.53 6.53 -2.39 -0.02 1.52 16 37 H 0.04 1.27 6.97 -2.39 -0.02 1.25 16 38 H 0.39 8.93 9.12 -74.06 -0.68 8.25 16 Total: -1.00 -71.76 287.92 0.30 -71.46 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.36 Total: 13.20 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: 3.25 Total: -29.23 kcal Atomic # 7 Polarization: -80.03 SS G_CDS: -3.53 Total: -83.56 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -1.81 Total: -21.14 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.26 kcal Total: -71.76 0.30 -71.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710020776.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.080 kcal (2) G-P(sol) polarization free energy of solvation -71.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds