Wall clock time and date at job start Mon Mar 30 2020 03:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46667 * 2 1 4 4 C 1.52990 * 109.47300 * 239.99660 * 2 1 3 5 5 C 1.50703 * 109.47422 * 174.58367 * 4 2 1 6 6 H 1.07999 * 119.99343 * 4.97360 * 5 4 2 7 7 C 1.37873 * 120.00110 * 184.97990 * 5 4 2 8 8 N 1.31518 * 120.00100 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99691 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47563 * 89.99822 * 9 7 5 11 11 H 1.48503 * 109.47069 * 209.99485 * 9 7 5 12 12 H 1.48496 * 109.47378 * 329.99216 * 9 7 5 13 13 N 1.46903 * 109.46863 * 119.99771 * 2 1 3 14 14 C 1.48569 * 110.99795 * 268.34903 * 13 2 1 15 15 C 1.54383 * 104.69333 * 159.10148 * 14 13 2 16 16 C 1.54261 * 105.06286 * 336.08642 * 15 14 13 17 17 H 1.08995 * 110.32252 * 118.89777 * 16 15 14 18 18 C 1.53006 * 110.32103 * 241.00461 * 16 15 14 19 19 C 1.48852 * 111.13336 * 23.66699 * 13 2 1 20 20 H 1.08999 * 110.39760 * 319.79781 * 19 13 2 21 21 C 1.53005 * 110.48938 * 82.16788 * 19 13 2 22 22 O 1.42904 * 109.47032 * 287.70954 * 21 19 13 23 23 H 1.09001 * 109.47566 * 301.78735 * 1 2 3 24 24 H 1.09002 * 109.47167 * 61.78882 * 1 2 3 25 25 H 1.09004 * 109.47177 * 181.79157 * 1 2 3 26 26 H 1.09007 * 109.47651 * 294.58680 * 4 2 1 27 27 H 1.09001 * 109.46966 * 54.58425 * 4 2 1 28 28 H 0.97000 * 119.99777 * 180.02562 * 8 7 5 29 29 H 1.08996 * 110.41002 * 40.26268 * 14 13 2 30 30 H 1.08994 * 110.40888 * 277.93528 * 14 13 2 31 31 H 1.09002 * 110.32265 * 94.98641 * 15 14 13 32 32 H 1.09002 * 110.31972 * 217.18986 * 15 14 13 33 33 H 1.08995 * 109.47189 * 58.54785 * 18 16 15 34 34 H 1.08997 * 109.46400 * 178.55023 * 18 16 15 35 35 H 1.09000 * 109.46717 * 298.54538 * 18 16 15 36 36 H 1.09000 * 109.47187 * 47.71384 * 21 19 13 37 37 H 1.09004 * 109.46696 * 167.71637 * 21 19 13 38 38 H 0.96696 * 113.99950 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5411 -0.6062 -1.3180 6 1 4.0847 -0.1425 -0.5082 7 6 4.2201 -1.0928 -2.4148 8 7 3.5580 -1.6578 -3.4008 9 14 6.0808 -0.9507 -2.4998 10 1 6.6977 -2.1578 -1.8935 11 1 6.5043 -0.8381 -3.9187 12 1 6.5196 0.2567 -1.7550 13 7 2.0196 -0.6925 1.1995 14 6 2.2347 0.2640 2.3159 15 6 2.2099 -0.6085 3.5893 16 6 1.3973 -1.8610 3.2013 17 1 2.0121 -2.7559 3.2977 18 6 0.1493 -1.9776 4.0788 19 6 0.9995 -1.6400 1.7261 20 1 0.0041 -1.2005 1.6625 21 6 1.0484 -2.9616 0.9566 22 8 0.5110 -2.7700 -0.3536 23 1 -0.3634 0.5413 0.8735 24 1 -0.3633 0.4858 -0.9056 25 1 -0.3634 -1.0272 0.0321 26 1 1.7580 -1.7732 -1.2020 27 1 1.5996 -0.2665 -2.1365 28 1 4.0358 -2.0004 -4.1722 29 1 1.4326 1.0014 2.3445 30 1 3.2007 0.7580 2.2123 31 1 3.2235 -0.8886 3.8761 32 1 1.7187 -0.0758 4.4036 33 1 -0.4610 -1.0820 3.9632 34 1 -0.4271 -2.8518 3.7761 35 1 0.4472 -2.0822 5.1220 36 1 2.0819 -3.2993 0.8797 37 1 0.4594 -3.7115 1.4848 38 1 0.5101 -3.5685 -0.8989 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710020777.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:41 Heat of formation + Delta-G solvation = -41.420333 kcal Electronic energy + Delta-G solvation = -17285.231815 eV Core-core repulsion = 14741.866488 eV Total energy + Delta-G solvation = -2543.365327 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.45363 -35.78541 -34.54350 -32.28011 -30.53911 -29.24628 -27.08161 -26.30754 -23.37961 -23.08371 -20.85141 -19.97610 -18.33709 -16.64549 -16.06707 -15.44709 -15.03156 -14.64249 -14.24681 -13.41451 -13.21401 -13.06566 -12.83443 -12.51207 -12.20686 -11.87219 -11.62825 -11.45259 -11.12975 -10.76586 -10.67106 -10.55115 -10.49907 -10.40168 -10.22812 -9.94658 -9.54087 -9.21206 -9.04977 -8.57859 -7.97151 -7.44140 -5.72449 -3.66760 3.45634 3.51225 3.55467 4.54283 4.66043 4.68101 4.91710 5.20734 5.25351 5.50978 5.63575 5.66540 5.70014 5.70906 5.82744 5.87971 5.96541 6.03416 6.08058 6.18727 6.21891 6.25113 6.37092 6.40899 6.46428 6.58943 6.69798 7.04422 7.36129 7.66954 7.81664 8.09703 8.29086 8.31643 8.55308 8.83576 9.40461 9.91165 11.39443 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030246 B = 0.008854 C = 0.008134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.512897 B = 3161.564734 C = 3441.360701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.084 3.916 3 H 0.050 0.950 4 C 0.017 3.983 5 C -0.481 4.481 6 H 0.051 0.949 7 C 0.047 3.953 8 N -0.905 5.905 9 Si 0.883 3.117 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.474 5.474 14 C 0.029 3.971 15 C -0.117 4.117 16 C -0.093 4.093 17 H 0.076 0.924 18 C -0.141 4.141 19 C 0.055 3.945 20 H 0.068 0.932 21 C 0.092 3.908 22 O -0.545 6.545 23 H 0.025 0.975 24 H 0.048 0.952 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.009 0.991 28 H 0.253 0.747 29 H 0.031 0.969 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.032 0.968 38 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.829 -1.547 12.872 14.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.024 4.024 3 H 0.068 0.932 4 C -0.020 4.020 5 C -0.520 4.520 6 H 0.070 0.930 7 C -0.151 4.151 8 N -0.547 5.547 9 Si 0.712 3.288 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.203 1.203 13 N -0.198 5.198 14 C -0.100 4.100 15 C -0.155 4.155 16 C -0.113 4.113 17 H 0.095 0.905 18 C -0.199 4.199 19 C -0.053 4.053 20 H 0.085 0.915 21 C 0.014 3.986 22 O -0.351 6.351 23 H 0.044 0.956 24 H 0.067 0.933 25 H 0.105 0.895 26 H 0.085 0.915 27 H 0.027 0.973 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.050 0.950 38 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -6.365 -1.265 12.749 14.305 hybrid contribution 0.506 0.042 -0.125 0.523 sum -5.859 -1.223 12.624 13.970 Atomic orbital electron populations 1.22635 0.99124 1.02976 0.99222 1.21953 0.90817 0.96831 0.92813 0.93162 1.19538 0.94767 0.99036 0.88637 1.21291 0.92824 1.35645 1.02274 0.93039 1.24954 0.97319 0.96573 0.96220 1.69975 1.34634 1.41696 1.08434 0.86745 0.87331 0.78113 0.76603 1.21158 1.21752 1.20317 1.65758 1.38469 1.13205 1.02327 1.23096 1.00672 0.94883 0.91306 1.22340 1.00202 0.95747 0.97224 1.21835 0.96437 0.98956 0.94034 0.90527 1.21857 0.97383 1.01562 0.99095 1.22959 0.96325 0.94215 0.91846 0.91454 1.21990 0.97766 0.95151 0.83664 1.86653 1.85113 1.38029 1.25256 0.95585 0.93293 0.89508 0.91490 0.97297 0.93706 0.95037 0.90621 0.91340 0.91999 0.92885 0.92761 0.92747 0.92624 0.95034 0.78325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.49 7.68 37.16 0.29 -3.20 16 2 C 0.08 1.85 2.13 -67.72 -0.14 1.70 16 3 H 0.05 1.15 7.77 -51.93 -0.40 0.75 16 4 C 0.02 0.45 4.37 -27.89 -0.12 0.33 16 5 C -0.48 -14.08 8.85 -34.44 -0.30 -14.38 16 6 H 0.05 1.51 7.75 -52.49 -0.41 1.11 16 7 C 0.05 1.41 5.46 -17.82 -0.10 1.31 16 8 N -0.91 -27.93 13.29 55.43 0.74 -27.19 16 9 Si 0.88 22.73 29.54 -169.99 -5.02 17.71 16 10 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 11 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 13 N -0.47 -9.40 4.68 -214.00 -1.00 -10.41 16 14 C 0.03 0.49 6.26 -2.18 -0.01 0.47 16 15 C -0.12 -1.60 6.65 -25.35 -0.17 -1.77 16 16 C -0.09 -1.27 3.20 -89.23 -0.29 -1.56 16 17 H 0.08 1.03 7.86 -51.93 -0.41 0.62 16 18 C -0.14 -1.55 8.91 37.16 0.33 -1.21 16 19 C 0.06 0.92 1.78 -65.90 -0.12 0.80 16 20 H 0.07 1.14 4.83 -51.93 -0.25 0.88 16 21 C 0.09 1.53 6.34 37.16 0.24 1.77 16 22 O -0.54 -9.86 7.46 -35.23 -0.26 -10.13 16 23 H 0.03 0.44 7.64 -51.93 -0.40 0.04 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.09 1.67 4.02 -51.93 -0.21 1.46 16 26 H 0.07 1.81 4.35 -51.75 -0.23 1.58 16 27 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.03 0.51 7.87 -51.93 -0.41 0.10 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.72 7.71 -51.93 -0.40 0.32 16 33 H 0.05 0.58 8.13 -51.93 -0.42 0.16 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.37 5.48 9.12 45.75 0.42 5.90 16 LS Contribution 288.38 15.07 4.35 4.35 Total: -1.00 -32.13 288.38 -7.23 -39.36 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.63 Total: 2.05 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -0.40 Total: -15.74 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: -0.27 Total: -37.60 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -0.26 Total: -10.13 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.13 -7.23 -39.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710020777.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.057 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds