Wall clock time and date at job start Mon Mar 30 2020 03:22:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 109.46667 * 2 1
4 4 C 1.52990 * 109.47300 * 239.99660 * 2 1 3
5 5 C 1.50703 * 109.47422 * 174.58367 * 4 2 1
6 6 H 1.07999 * 119.99343 * 4.97360 * 5 4 2
7 7 C 1.37873 * 120.00110 * 184.97990 * 5 4 2
8 8 N 1.31518 * 120.00100 * 359.97438 * 7 5 4
9 9 Si 1.86798 * 119.99691 * 180.02562 * 7 5 4
10 10 H 1.48502 * 109.47563 * 89.99822 * 9 7 5
11 11 H 1.48503 * 109.47069 * 209.99485 * 9 7 5
12 12 H 1.48496 * 109.47378 * 329.99216 * 9 7 5
13 13 N 1.46903 * 109.46863 * 119.99771 * 2 1 3
14 14 C 1.48569 * 110.99795 * 268.34903 * 13 2 1
15 15 C 1.54383 * 104.69333 * 159.10148 * 14 13 2
16 16 C 1.54261 * 105.06286 * 336.08642 * 15 14 13
17 17 H 1.08995 * 110.32252 * 118.89777 * 16 15 14
18 18 C 1.53006 * 110.32103 * 241.00461 * 16 15 14
19 19 C 1.48852 * 111.13336 * 23.66699 * 13 2 1
20 20 H 1.08999 * 110.39760 * 319.79781 * 19 13 2
21 21 C 1.53005 * 110.48938 * 82.16788 * 19 13 2
22 22 O 1.42904 * 109.47032 * 287.70954 * 21 19 13
23 23 H 1.09001 * 109.47566 * 301.78735 * 1 2 3
24 24 H 1.09002 * 109.47167 * 61.78882 * 1 2 3
25 25 H 1.09004 * 109.47177 * 181.79157 * 1 2 3
26 26 H 1.09007 * 109.47651 * 294.58680 * 4 2 1
27 27 H 1.09001 * 109.46966 * 54.58425 * 4 2 1
28 28 H 0.97000 * 119.99777 * 180.02562 * 8 7 5
29 29 H 1.08996 * 110.41002 * 40.26268 * 14 13 2
30 30 H 1.08994 * 110.40888 * 277.93528 * 14 13 2
31 31 H 1.09002 * 110.32265 * 94.98641 * 15 14 13
32 32 H 1.09002 * 110.31972 * 217.18986 * 15 14 13
33 33 H 1.08995 * 109.47189 * 58.54785 * 18 16 15
34 34 H 1.08997 * 109.46400 * 178.55023 * 18 16 15
35 35 H 1.09000 * 109.46717 * 298.54538 * 18 16 15
36 36 H 1.09000 * 109.47187 * 47.71384 * 21 19 13
37 37 H 1.09004 * 109.46696 * 167.71637 * 21 19 13
38 38 H 0.96696 * 113.99950 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0400 -0.7213 -1.2491
5 6 3.5411 -0.6062 -1.3180
6 1 4.0847 -0.1425 -0.5082
7 6 4.2201 -1.0928 -2.4148
8 7 3.5580 -1.6578 -3.4008
9 14 6.0808 -0.9507 -2.4998
10 1 6.6977 -2.1578 -1.8935
11 1 6.5043 -0.8381 -3.9187
12 1 6.5196 0.2567 -1.7550
13 7 2.0196 -0.6925 1.1995
14 6 2.2347 0.2640 2.3159
15 6 2.2099 -0.6085 3.5893
16 6 1.3973 -1.8610 3.2013
17 1 2.0121 -2.7559 3.2977
18 6 0.1493 -1.9776 4.0788
19 6 0.9995 -1.6400 1.7261
20 1 0.0041 -1.2005 1.6625
21 6 1.0484 -2.9616 0.9566
22 8 0.5110 -2.7700 -0.3536
23 1 -0.3634 0.5413 0.8735
24 1 -0.3633 0.4858 -0.9056
25 1 -0.3634 -1.0272 0.0321
26 1 1.7580 -1.7732 -1.2020
27 1 1.5996 -0.2665 -2.1365
28 1 4.0358 -2.0004 -4.1722
29 1 1.4326 1.0014 2.3445
30 1 3.2007 0.7580 2.2123
31 1 3.2235 -0.8886 3.8761
32 1 1.7187 -0.0758 4.4036
33 1 -0.4610 -1.0820 3.9632
34 1 -0.4271 -2.8518 3.7761
35 1 0.4472 -2.0822 5.1220
36 1 2.0819 -3.2993 0.8797
37 1 0.4594 -3.7115 1.4848
38 1 0.5101 -3.5685 -0.8989
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000710020777.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:22:41
Heat of formation + Delta-G solvation = -41.420333 kcal
Electronic energy + Delta-G solvation = -17285.231815 eV
Core-core repulsion = 14741.866488 eV
Total energy + Delta-G solvation = -2543.365327 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-39.45363 -35.78541 -34.54350 -32.28011 -30.53911 -29.24628 -27.08161 -26.30754
-23.37961 -23.08371 -20.85141 -19.97610 -18.33709 -16.64549 -16.06707 -15.44709
-15.03156 -14.64249 -14.24681 -13.41451 -13.21401 -13.06566 -12.83443 -12.51207
-12.20686 -11.87219 -11.62825 -11.45259 -11.12975 -10.76586 -10.67106 -10.55115
-10.49907 -10.40168 -10.22812 -9.94658 -9.54087 -9.21206 -9.04977 -8.57859
-7.97151 -7.44140 -5.72449 -3.66760 3.45634 3.51225 3.55467 4.54283
4.66043 4.68101 4.91710 5.20734 5.25351 5.50978 5.63575 5.66540
5.70014 5.70906 5.82744 5.87971 5.96541 6.03416 6.08058 6.18727
6.21891 6.25113 6.37092 6.40899 6.46428 6.58943 6.69798 7.04422
7.36129 7.66954 7.81664 8.09703 8.29086 8.31643 8.55308 8.83576
9.40461 9.91165 11.39443
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.030246 B = 0.008854 C = 0.008134
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 925.512897 B = 3161.564734 C = 3441.360701
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C 0.084 3.916
3 H 0.050 0.950
4 C 0.017 3.983
5 C -0.481 4.481
6 H 0.051 0.949
7 C 0.047 3.953
8 N -0.905 5.905
9 Si 0.883 3.117
10 H -0.285 1.285
11 H -0.291 1.291
12 H -0.278 1.278
13 N -0.474 5.474
14 C 0.029 3.971
15 C -0.117 4.117
16 C -0.093 4.093
17 H 0.076 0.924
18 C -0.141 4.141
19 C 0.055 3.945
20 H 0.068 0.932
21 C 0.092 3.908
22 O -0.545 6.545
23 H 0.025 0.975
24 H 0.048 0.952
25 H 0.086 0.914
26 H 0.068 0.932
27 H 0.009 0.991
28 H 0.253 0.747
29 H 0.031 0.969
30 H 0.075 0.925
31 H 0.068 0.932
32 H 0.061 0.939
33 H 0.052 0.948
34 H 0.053 0.947
35 H 0.053 0.947
36 H 0.055 0.945
37 H 0.032 0.968
38 H 0.369 0.631
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.829 -1.547 12.872 14.653
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.240 4.240
2 C -0.024 4.024
3 H 0.068 0.932
4 C -0.020 4.020
5 C -0.520 4.520
6 H 0.070 0.930
7 C -0.151 4.151
8 N -0.547 5.547
9 Si 0.712 3.288
10 H -0.212 1.212
11 H -0.218 1.218
12 H -0.203 1.203
13 N -0.198 5.198
14 C -0.100 4.100
15 C -0.155 4.155
16 C -0.113 4.113
17 H 0.095 0.905
18 C -0.199 4.199
19 C -0.053 4.053
20 H 0.085 0.915
21 C 0.014 3.986
22 O -0.351 6.351
23 H 0.044 0.956
24 H 0.067 0.933
25 H 0.105 0.895
26 H 0.085 0.915
27 H 0.027 0.973
28 H 0.063 0.937
29 H 0.050 0.950
30 H 0.094 0.906
31 H 0.087 0.913
32 H 0.080 0.920
33 H 0.071 0.929
34 H 0.072 0.928
35 H 0.073 0.927
36 H 0.074 0.926
37 H 0.050 0.950
38 H 0.217 0.783
Dipole moment (debyes) X Y Z Total
from point charges -6.365 -1.265 12.749 14.305
hybrid contribution 0.506 0.042 -0.125 0.523
sum -5.859 -1.223 12.624 13.970
Atomic orbital electron populations
1.22635 0.99124 1.02976 0.99222 1.21953 0.90817 0.96831 0.92813
0.93162 1.19538 0.94767 0.99036 0.88637 1.21291 0.92824 1.35645
1.02274 0.93039 1.24954 0.97319 0.96573 0.96220 1.69975 1.34634
1.41696 1.08434 0.86745 0.87331 0.78113 0.76603 1.21158 1.21752
1.20317 1.65758 1.38469 1.13205 1.02327 1.23096 1.00672 0.94883
0.91306 1.22340 1.00202 0.95747 0.97224 1.21835 0.96437 0.98956
0.94034 0.90527 1.21857 0.97383 1.01562 0.99095 1.22959 0.96325
0.94215 0.91846 0.91454 1.21990 0.97766 0.95151 0.83664 1.86653
1.85113 1.38029 1.25256 0.95585 0.93293 0.89508 0.91490 0.97297
0.93706 0.95037 0.90621 0.91340 0.91999 0.92885 0.92761 0.92747
0.92624 0.95034 0.78325
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.49 7.68 37.16 0.29 -3.20 16
2 C 0.08 1.85 2.13 -67.72 -0.14 1.70 16
3 H 0.05 1.15 7.77 -51.93 -0.40 0.75 16
4 C 0.02 0.45 4.37 -27.89 -0.12 0.33 16
5 C -0.48 -14.08 8.85 -34.44 -0.30 -14.38 16
6 H 0.05 1.51 7.75 -52.49 -0.41 1.11 16
7 C 0.05 1.41 5.46 -17.82 -0.10 1.31 16
8 N -0.91 -27.93 13.29 55.43 0.74 -27.19 16
9 Si 0.88 22.73 29.54 -169.99 -5.02 17.71 16
10 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16
11 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16
12 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16
13 N -0.47 -9.40 4.68 -214.00 -1.00 -10.41 16
14 C 0.03 0.49 6.26 -2.18 -0.01 0.47 16
15 C -0.12 -1.60 6.65 -25.35 -0.17 -1.77 16
16 C -0.09 -1.27 3.20 -89.23 -0.29 -1.56 16
17 H 0.08 1.03 7.86 -51.93 -0.41 0.62 16
18 C -0.14 -1.55 8.91 37.16 0.33 -1.21 16
19 C 0.06 0.92 1.78 -65.90 -0.12 0.80 16
20 H 0.07 1.14 4.83 -51.93 -0.25 0.88 16
21 C 0.09 1.53 6.34 37.16 0.24 1.77 16
22 O -0.54 -9.86 7.46 -35.23 -0.26 -10.13 16
23 H 0.03 0.44 7.64 -51.93 -0.40 0.04 16
24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16
25 H 0.09 1.67 4.02 -51.93 -0.21 1.46 16
26 H 0.07 1.81 4.35 -51.75 -0.23 1.58 16
27 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16
28 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16
29 H 0.03 0.51 7.87 -51.93 -0.41 0.10 16
30 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16
31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
32 H 0.06 0.72 7.71 -51.93 -0.40 0.32 16
33 H 0.05 0.58 8.13 -51.93 -0.42 0.16 16
34 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16
35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16
36 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16
37 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16
38 H 0.37 5.48 9.12 45.75 0.42 5.90 16
LS Contribution 288.38 15.07 4.35 4.35
Total: -1.00 -32.13 288.38 -7.23 -39.36
By element:
Atomic # 1 Polarization: 7.68 SS G_CDS: -5.63 Total: 2.05 kcal
Atomic # 6 Polarization: -15.34 SS G_CDS: -0.40 Total: -15.74 kcal
Atomic # 7 Polarization: -37.33 SS G_CDS: -0.27 Total: -37.60 kcal
Atomic # 8 Polarization: -9.86 SS G_CDS: -0.26 Total: -10.13 kcal
Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal
Total LS contribution 4.35 Total: 4.35 kcal
Total: -32.13 -7.23 -39.36 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000710020777.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.057 kcal
(2) G-P(sol) polarization free energy of solvation -32.130 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.186 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.420 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds