Wall clock time and date at job start Mon Mar 30 2020 03:22:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 109.46667 * 2 1
4 4 C 1.52990 * 109.47300 * 239.99660 * 2 1 3
5 5 C 1.50703 * 109.47422 * 174.58367 * 4 2 1
6 6 H 1.07999 * 119.99343 * 4.97360 * 5 4 2
7 7 C 1.37873 * 120.00110 * 184.97990 * 5 4 2
8 8 N 1.31518 * 120.00100 * 359.97438 * 7 5 4
9 9 Si 1.86798 * 119.99691 * 180.02562 * 7 5 4
10 10 H 1.48502 * 109.47563 * 89.99822 * 9 7 5
11 11 H 1.48503 * 109.47069 * 209.99485 * 9 7 5
12 12 H 1.48496 * 109.47378 * 329.99216 * 9 7 5
13 13 N 1.46903 * 109.46863 * 119.99771 * 2 1 3
14 14 C 1.48569 * 110.99795 * 268.34903 * 13 2 1
15 15 C 1.54383 * 104.69333 * 159.10148 * 14 13 2
16 16 C 1.54261 * 105.06286 * 336.08642 * 15 14 13
17 17 H 1.08995 * 110.32252 * 118.89777 * 16 15 14
18 18 C 1.53006 * 110.32103 * 241.00461 * 16 15 14
19 19 C 1.48852 * 111.13336 * 23.66699 * 13 2 1
20 20 H 1.08999 * 110.39760 * 319.79781 * 19 13 2
21 21 C 1.53005 * 110.48938 * 82.16788 * 19 13 2
22 22 O 1.42904 * 109.47032 * 287.70954 * 21 19 13
23 23 H 1.09001 * 109.47566 * 301.78735 * 1 2 3
24 24 H 1.09002 * 109.47167 * 61.78882 * 1 2 3
25 25 H 1.09004 * 109.47177 * 181.79157 * 1 2 3
26 26 H 1.09007 * 109.47651 * 294.58680 * 4 2 1
27 27 H 1.09001 * 109.46966 * 54.58425 * 4 2 1
28 28 H 0.97000 * 119.99777 * 180.02562 * 8 7 5
29 29 H 1.08996 * 110.41002 * 40.26268 * 14 13 2
30 30 H 1.08994 * 110.40888 * 277.93528 * 14 13 2
31 31 H 1.09002 * 110.32265 * 94.98641 * 15 14 13
32 32 H 1.09002 * 110.31972 * 217.18986 * 15 14 13
33 33 H 1.08995 * 109.47189 * 58.54785 * 18 16 15
34 34 H 1.08997 * 109.46400 * 178.55023 * 18 16 15
35 35 H 1.09000 * 109.46717 * 298.54538 * 18 16 15
36 36 H 1.09000 * 109.47187 * 47.71384 * 21 19 13
37 37 H 1.09004 * 109.46696 * 167.71637 * 21 19 13
38 38 H 0.96696 * 113.99950 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0400 -0.7213 -1.2491
5 6 3.5411 -0.6062 -1.3180
6 1 4.0847 -0.1425 -0.5082
7 6 4.2201 -1.0928 -2.4148
8 7 3.5580 -1.6578 -3.4008
9 14 6.0808 -0.9507 -2.4998
10 1 6.6977 -2.1578 -1.8935
11 1 6.5043 -0.8381 -3.9187
12 1 6.5196 0.2567 -1.7550
13 7 2.0196 -0.6925 1.1995
14 6 2.2347 0.2640 2.3159
15 6 2.2099 -0.6085 3.5893
16 6 1.3973 -1.8610 3.2013
17 1 2.0121 -2.7559 3.2977
18 6 0.1493 -1.9776 4.0788
19 6 0.9995 -1.6400 1.7261
20 1 0.0041 -1.2005 1.6625
21 6 1.0484 -2.9616 0.9566
22 8 0.5110 -2.7700 -0.3536
23 1 -0.3634 0.5413 0.8735
24 1 -0.3633 0.4858 -0.9056
25 1 -0.3634 -1.0272 0.0321
26 1 1.7580 -1.7732 -1.2020
27 1 1.5996 -0.2665 -2.1365
28 1 4.0358 -2.0004 -4.1722
29 1 1.4326 1.0014 2.3445
30 1 3.2007 0.7580 2.2123
31 1 3.2235 -0.8886 3.8761
32 1 1.7187 -0.0758 4.4036
33 1 -0.4610 -1.0820 3.9632
34 1 -0.4271 -2.8518 3.7761
35 1 0.4472 -2.0822 5.1220
36 1 2.0819 -3.2993 0.8797
37 1 0.4594 -3.7115 1.4848
38 1 0.5101 -3.5685 -0.8989
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000710020777.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:22:41
Heat of formation + Delta-G solvation = -64.400953 kcal
Electronic energy + Delta-G solvation = -17286.228330 eV
Core-core repulsion = 14741.866488 eV
Total energy + Delta-G solvation = -2544.361842 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.81942 -37.14571 -36.15842 -34.34641 -31.87067 -30.70359 -29.02431 -27.52429
-25.10638 -24.59459 -22.42854 -21.21355 -19.85862 -18.30372 -17.99245 -16.77425
-16.63111 -16.23123 -16.01199 -14.74265 -14.67651 -14.46990 -14.11222 -13.87964
-13.77402 -13.47478 -13.15665 -13.00504 -12.77504 -12.54990 -12.42712 -12.18352
-11.81841 -11.70087 -11.54724 -11.44913 -11.17782 -11.01351 -10.86567 -10.61318
-10.08730 -8.95366 -8.01152 -6.02700 1.39962 1.41003 1.51404 2.50335
3.18519 3.34374 3.41291 3.78971 4.02450 4.12716 4.31094 4.44918
4.46169 4.55375 4.56556 4.62822 4.66244 4.67818 4.83199 4.90580
4.97427 5.07732 5.12842 5.19757 5.27291 5.33725 5.43483 5.49585
5.58176 5.69640 5.88799 6.18369 6.39962 6.51741 6.64980 7.04412
7.14761 7.58845 9.10321
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.030246 B = 0.008854 C = 0.008134
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 925.512897 B = 3161.564734 C = 3441.360701
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.092 3.908
3 H 0.032 0.968
4 C 0.022 3.978
5 C -0.495 4.495
6 H 0.044 0.956
7 C -0.006 4.006
8 N -0.937 5.937
9 Si 0.950 3.050
10 H -0.277 1.277
11 H -0.286 1.286
12 H -0.272 1.272
13 N -0.502 5.502
14 C 0.025 3.975
15 C -0.109 4.109
16 C -0.088 4.088
17 H 0.078 0.922
18 C -0.135 4.135
19 C 0.052 3.948
20 H 0.070 0.930
21 C 0.092 3.908
22 O -0.566 6.566
23 H 0.050 0.950
24 H 0.040 0.960
25 H 0.089 0.911
26 H 0.065 0.935
27 H -0.031 1.031
28 H 0.255 0.745
29 H 0.038 0.962
30 H 0.061 0.939
31 H 0.070 0.930
32 H 0.089 0.911
33 H 0.053 0.947
34 H 0.061 0.939
35 H 0.073 0.927
36 H 0.029 0.971
37 H 0.068 0.932
38 H 0.380 0.620
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.974 -1.909 15.056 16.702
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C -0.017 4.017
3 H 0.050 0.950
4 C -0.015 4.015
5 C -0.534 4.534
6 H 0.062 0.938
7 C -0.201 4.201
8 N -0.580 5.580
9 Si 0.776 3.224
10 H -0.203 1.203
11 H -0.212 1.212
12 H -0.197 1.197
13 N -0.227 5.227
14 C -0.103 4.103
15 C -0.147 4.147
16 C -0.108 4.108
17 H 0.096 0.904
18 C -0.193 4.193
19 C -0.056 4.056
20 H 0.087 0.913
21 C 0.014 3.986
22 O -0.374 6.374
23 H 0.069 0.931
24 H 0.059 0.941
25 H 0.108 0.892
26 H 0.082 0.918
27 H -0.013 1.013
28 H 0.064 0.936
29 H 0.057 0.943
30 H 0.080 0.920
31 H 0.088 0.912
32 H 0.107 0.893
33 H 0.072 0.928
34 H 0.080 0.920
35 H 0.092 0.908
36 H 0.048 0.952
37 H 0.086 0.914
38 H 0.229 0.771
Dipole moment (debyes) X Y Z Total
from point charges -6.512 -1.631 14.950 16.388
hybrid contribution 0.543 0.143 -0.815 0.990
sum -5.968 -1.488 14.135 15.416
Atomic orbital electron populations
1.22494 0.96933 1.03463 0.99911 1.21589 0.92513 0.95193 0.92358
0.94987 1.19435 0.93460 0.99175 0.89460 1.21580 0.94322 1.35384
1.02128 0.93794 1.25758 1.02196 0.96294 0.95902 1.70104 1.36500
1.42462 1.08954 0.85683 0.81502 0.78381 0.76803 1.20291 1.21157
1.19714 1.65581 1.40005 1.14419 1.02652 1.23141 1.00153 0.95134
0.91854 1.22335 1.00845 0.95357 0.96186 1.21845 0.97808 0.98871
0.92232 0.90400 1.21819 0.95917 1.02016 0.99517 1.23111 0.95549
0.93253 0.93707 0.91258 1.22104 0.96858 0.96256 0.83398 1.86569
1.85002 1.39403 1.26423 0.93138 0.94137 0.89226 0.91755 1.01309
0.93586 0.94335 0.92042 0.91169 0.89259 0.92769 0.91995 0.90777
0.95236 0.91357 0.77056
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -6.46 7.68 71.98 0.55 -5.91 16
2 C 0.09 4.13 2.13 44.91 0.10 4.22 16
3 H 0.03 1.51 7.77 -2.39 -0.02 1.49 16
4 C 0.02 1.19 4.37 29.85 0.13 1.32 16
5 C -0.50 -29.71 8.85 25.60 0.23 -29.48 16
6 H 0.04 2.64 7.75 -2.91 -0.02 2.62 16
7 C -0.01 -0.38 5.46 84.65 0.46 0.08 16
8 N -0.94 -59.00 13.29 21.45 0.28 -58.71 16
9 Si 0.95 47.16 29.54 68.60 2.03 49.19 16
10 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16
11 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16
12 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16
13 N -0.50 -19.79 4.68 -830.97 -3.89 -23.68 16
14 C 0.03 0.82 6.26 86.45 0.54 1.36 16
15 C -0.11 -2.68 6.65 31.49 0.21 -2.47 16
16 C -0.09 -2.14 3.20 -9.90 -0.03 -2.17 16
17 H 0.08 1.88 7.86 -2.39 -0.02 1.86 16
18 C -0.14 -2.40 8.91 71.98 0.64 -1.76 16
19 C 0.05 1.64 1.78 45.01 0.08 1.72 16
20 H 0.07 2.18 4.83 -2.39 -0.01 2.16 16
21 C 0.09 2.94 6.34 71.98 0.46 3.39 16
22 O -0.57 -20.50 7.46 -148.98 -1.11 -21.61 16
23 H 0.05 1.65 7.64 -2.39 -0.02 1.63 16
24 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16
25 H 0.09 3.37 4.02 -2.38 -0.01 3.36 16
26 H 0.06 3.59 4.35 -2.27 -0.01 3.58 16
27 H -0.03 -1.95 8.14 -2.39 -0.02 -1.97 16
28 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16
29 H 0.04 1.18 7.87 -2.39 -0.02 1.16 16
30 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16
31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16
32 H 0.09 1.72 7.71 -2.39 -0.02 1.70 16
33 H 0.05 0.97 8.13 -2.39 -0.02 0.95 16
34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16
35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16
36 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16
37 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16
38 H 0.38 11.41 9.12 -73.76 -0.67 10.74 16
Total: -1.00 -69.92 288.38 1.03 -68.89
By element:
Atomic # 1 Polarization: 15.25 SS G_CDS: 0.36 Total: 15.61 kcal
Atomic # 6 Polarization: -33.05 SS G_CDS: 3.36 Total: -29.69 kcal
Atomic # 7 Polarization: -78.79 SS G_CDS: -3.61 Total: -82.39 kcal
Atomic # 8 Polarization: -20.50 SS G_CDS: -1.11 Total: -21.61 kcal
Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal
Total: -69.92 1.03 -68.89 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000710020777.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.491 kcal
(2) G-P(sol) polarization free energy of solvation -69.923 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.431 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.030 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.892 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.401 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds