Wall clock time and date at job start Mon Mar 30 2020 04:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 109.47389 * 2 1 4 4 C 1.53004 * 109.47075 * 120.00233 * 2 1 3 5 5 C 1.50692 * 109.47380 * 184.99916 * 4 2 1 6 6 H 1.08000 * 119.99676 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00402 * 180.02562 * 5 4 2 8 8 N 1.31507 * 119.99964 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99631 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47374 * 90.00147 * 9 7 5 11 11 H 1.48503 * 109.47037 * 210.00096 * 9 7 5 12 12 H 1.48503 * 109.47378 * 329.99943 * 9 7 5 13 13 N 1.46896 * 109.47144 * 239.99742 * 2 1 3 14 14 C 1.46902 * 110.99940 * 85.00100 * 13 2 1 15 15 C 1.53002 * 109.47366 * 180.02562 * 14 13 2 16 16 C 1.52999 * 109.47128 * 180.02562 * 15 14 13 17 17 O 1.42899 * 109.46889 * 179.97438 * 16 15 14 18 18 C 1.42905 * 113.99778 * 179.97438 * 17 16 15 19 19 C 1.53000 * 117.49678 * 218.62266 * 18 17 16 20 20 C 1.53000 * 117.49656 * 150.00076 * 18 17 16 21 21 H 1.09003 * 109.47106 * 59.99926 * 1 2 3 22 22 H 1.08997 * 109.47815 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47377 * 300.00033 * 1 2 3 24 24 H 1.09001 * 109.46995 * 304.99916 * 4 2 1 25 25 H 1.08999 * 109.47231 * 64.99399 * 4 2 1 26 26 H 0.97003 * 120.00063 * 179.97438 * 8 7 5 27 27 H 1.00896 * 111.00335 * 208.95379 * 13 2 1 28 28 H 1.09005 * 109.46746 * 60.00338 * 14 13 2 29 29 H 1.08999 * 109.47499 * 300.00255 * 14 13 2 30 30 H 1.08997 * 109.47213 * 60.00068 * 15 14 13 31 31 H 1.09008 * 109.46725 * 300.00184 * 15 14 13 32 32 H 1.08997 * 109.47286 * 59.99785 * 16 15 14 33 33 H 1.08997 * 109.46848 * 299.99883 * 16 15 14 34 34 H 1.08995 * 115.55104 * 4.33482 * 18 17 16 35 35 H 1.08997 * 117.50438 * 0.02562 * 19 18 17 36 36 H 1.09003 * 117.49498 * 145.02905 * 19 18 17 37 37 H 1.08995 * 117.49936 * 214.98149 * 20 18 17 38 38 H 1.09007 * 117.49866 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5418 -0.6150 1.3128 6 1 4.0789 -0.0863 0.5393 7 6 4.2304 -1.1937 2.3578 8 7 5.5409 -1.1005 2.4135 9 14 3.3014 -2.1089 3.6953 10 1 3.1697 -3.5388 3.3169 11 1 4.0453 -2.0023 4.9762 12 1 1.9507 -1.5130 3.8563 13 7 2.0196 -0.6925 -1.1994 14 6 2.0824 0.2225 -2.3469 15 6 2.5950 -0.5332 -3.5745 16 6 2.6610 0.4200 -4.7694 17 8 3.1403 -0.2858 -5.9158 18 6 3.2396 0.5177 -7.0934 19 6 2.8496 -0.1283 -8.4243 20 6 4.3212 0.1491 -8.1109 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.6053 -0.2618 2.1370 25 1 1.7515 -1.7715 1.2056 26 1 6.0254 -1.5073 3.1489 27 1 2.9172 -1.1205 -1.0287 28 1 2.7589 1.0461 -2.1182 29 1 1.0871 0.6163 -2.5525 30 1 1.9183 -1.3566 -3.8030 31 1 3.5904 -0.9273 -3.3690 32 1 3.3379 1.2431 -4.5406 33 1 1.6659 0.8144 -4.9749 34 1 3.0125 1.5755 -6.9613 35 1 2.5168 -1.1660 -8.4017 36 1 2.3655 0.5045 -9.1682 37 1 4.8053 0.9644 -8.6484 38 1 4.9573 -0.7059 -7.8818 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717315655.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:53 Heat of formation + Delta-G solvation = -36.564116 kcal Electronic energy + Delta-G solvation = -15390.555118 eV Core-core repulsion = 12847.400372 eV Total energy + Delta-G solvation = -2543.154746 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.67926 -36.99300 -35.34707 -33.22044 -32.03992 -29.11876 -27.85485 -24.38474 -22.59863 -22.49347 -22.12580 -20.94898 -19.34186 -17.24649 -16.81923 -15.94173 -15.41646 -14.86774 -14.76835 -14.29790 -13.92835 -13.35328 -12.93832 -12.49690 -12.44497 -11.98221 -11.75674 -11.69627 -11.62297 -11.54661 -10.98990 -10.91282 -10.86684 -10.60319 -10.56860 -10.20497 -9.79880 -9.46278 -9.22061 -9.21404 -8.56003 -7.70988 -6.07175 -4.05798 3.31599 3.34211 3.38753 3.42768 3.64937 4.44223 4.60344 4.74386 4.75117 5.05591 5.11879 5.19432 5.29976 5.39343 5.41862 5.48876 5.61667 5.70938 5.75827 5.82431 5.92248 5.98699 6.08629 6.20280 6.36965 6.38213 6.49058 6.71827 6.79076 7.16283 7.20113 7.28735 7.75601 7.90209 8.22969 8.47833 8.94524 9.55517 11.05825 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037503 B = 0.004296 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.435403 B = 6515.421524 C = 7057.519574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.096 3.904 3 H 0.035 0.965 4 C -0.017 4.017 5 C -0.525 4.525 6 H 0.069 0.931 7 C 0.069 3.931 8 N -0.902 5.902 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.685 5.685 14 C 0.064 3.936 15 C -0.117 4.117 16 C 0.067 3.933 17 O -0.356 6.356 18 C 0.018 3.982 19 C -0.192 4.192 20 C -0.186 4.186 21 H 0.039 0.961 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.021 0.979 25 H 0.021 0.979 26 H 0.263 0.737 27 H 0.359 0.641 28 H 0.026 0.974 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.834 3.879 -16.293 18.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.014 4.014 3 H 0.053 0.947 4 C -0.055 4.055 5 C -0.563 4.563 6 H 0.087 0.913 7 C -0.133 4.133 8 N -0.540 5.540 9 Si 0.710 3.290 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.190 1.190 13 N -0.319 5.319 14 C -0.066 4.066 15 C -0.155 4.155 16 C -0.010 4.010 17 O -0.274 6.274 18 C -0.040 4.040 19 C -0.229 4.229 20 C -0.223 4.223 21 H 0.059 0.941 22 H 0.074 0.926 23 H 0.067 0.933 24 H 0.039 0.961 25 H 0.040 0.960 26 H 0.073 0.927 27 H 0.180 0.820 28 H 0.044 0.956 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.240 3.382 -16.322 18.173 hybrid contribution 0.440 0.319 0.948 1.092 sum -6.800 3.700 -15.374 17.213 Atomic orbital electron populations 1.21831 0.96651 1.01373 0.99737 1.21391 0.93221 0.96056 0.90704 0.94721 1.19772 0.97010 0.95998 0.92692 1.21083 0.89901 1.35369 1.09901 0.91299 1.25014 0.94691 0.95700 0.97884 1.69916 1.06602 1.45195 1.32318 0.86739 0.80380 0.80585 0.81330 1.20200 1.21531 1.19024 1.60547 1.35173 1.31978 1.04194 1.21778 0.99566 0.94282 0.90954 1.21484 1.03001 0.98718 0.92250 1.22562 0.97836 0.95206 0.85391 1.87848 1.85936 1.36206 1.17456 1.22635 1.03844 0.94414 0.83138 1.23381 0.97981 1.02926 0.98609 1.23332 0.92390 1.04203 1.02397 0.94146 0.92638 0.93310 0.96072 0.96038 0.92715 0.81996 0.95594 0.91879 0.90476 0.90990 0.93162 0.93210 0.87364 0.88187 0.88402 0.88281 0.88104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.41 37.16 0.35 -2.00 16 2 C 0.10 1.93 2.59 -67.71 -0.18 1.76 16 3 H 0.03 0.73 7.80 -51.93 -0.40 0.32 16 4 C -0.02 -0.41 3.64 -27.88 -0.10 -0.51 16 5 C -0.52 -14.60 8.67 -34.44 -0.30 -14.90 16 6 H 0.07 2.05 7.73 -52.49 -0.41 1.65 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 9 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 13 N -0.68 -13.09 6.31 -106.73 -0.67 -13.76 16 14 C 0.06 1.02 5.48 -3.82 -0.02 1.00 16 15 C -0.12 -1.68 5.84 -26.73 -0.16 -1.83 16 16 C 0.07 0.83 5.81 37.16 0.22 1.05 16 17 O -0.36 -4.83 10.60 -35.23 -0.37 -5.21 16 18 C 0.02 0.19 6.44 -26.73 -0.17 0.02 16 19 C -0.19 -1.73 10.48 -26.73 -0.28 -2.01 16 20 C -0.19 -1.72 10.48 -26.73 -0.28 -2.00 16 21 H 0.04 0.61 7.45 -51.93 -0.39 0.22 16 22 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.02 0.51 7.20 -51.93 -0.37 0.13 16 25 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 27 H 0.36 7.63 7.21 -39.29 -0.28 7.34 16 28 H 0.03 0.43 8.06 -51.93 -0.42 0.01 16 29 H 0.06 0.92 7.44 -51.93 -0.39 0.53 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.11 0.95 7.93 -51.93 -0.41 0.53 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 1.00 8.14 -51.92 -0.42 0.58 16 LS Contribution 311.52 15.07 4.69 4.69 Total: -1.00 -29.99 311.52 -8.12 -38.11 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -6.86 Total: 3.39 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -1.02 Total: -17.54 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.10 Total: -40.53 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.37 Total: -5.21 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.99 -8.12 -38.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717315655.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.547 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds