Wall clock time and date at job start Mon Mar 30 2020 04:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 109.47389 * 2 1 4 4 C 1.53004 * 109.47075 * 120.00233 * 2 1 3 5 5 C 1.50692 * 109.47380 * 184.99916 * 4 2 1 6 6 H 1.08000 * 119.99676 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00402 * 180.02562 * 5 4 2 8 8 N 1.31507 * 119.99964 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99631 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47374 * 90.00147 * 9 7 5 11 11 H 1.48503 * 109.47037 * 210.00096 * 9 7 5 12 12 H 1.48503 * 109.47378 * 329.99943 * 9 7 5 13 13 N 1.46896 * 109.47144 * 239.99742 * 2 1 3 14 14 C 1.46902 * 110.99940 * 85.00100 * 13 2 1 15 15 C 1.53002 * 109.47366 * 180.02562 * 14 13 2 16 16 C 1.52999 * 109.47128 * 180.02562 * 15 14 13 17 17 O 1.42899 * 109.46889 * 179.97438 * 16 15 14 18 18 C 1.42905 * 113.99778 * 179.97438 * 17 16 15 19 19 C 1.53000 * 117.49678 * 218.62266 * 18 17 16 20 20 C 1.53000 * 117.49656 * 150.00076 * 18 17 16 21 21 H 1.09003 * 109.47106 * 59.99926 * 1 2 3 22 22 H 1.08997 * 109.47815 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47377 * 300.00033 * 1 2 3 24 24 H 1.09001 * 109.46995 * 304.99916 * 4 2 1 25 25 H 1.08999 * 109.47231 * 64.99399 * 4 2 1 26 26 H 0.97003 * 120.00063 * 179.97438 * 8 7 5 27 27 H 1.00896 * 111.00335 * 208.95379 * 13 2 1 28 28 H 1.09005 * 109.46746 * 60.00338 * 14 13 2 29 29 H 1.08999 * 109.47499 * 300.00255 * 14 13 2 30 30 H 1.08997 * 109.47213 * 60.00068 * 15 14 13 31 31 H 1.09008 * 109.46725 * 300.00184 * 15 14 13 32 32 H 1.08997 * 109.47286 * 59.99785 * 16 15 14 33 33 H 1.08997 * 109.46848 * 299.99883 * 16 15 14 34 34 H 1.08995 * 115.55104 * 4.33482 * 18 17 16 35 35 H 1.08997 * 117.50438 * 0.02562 * 19 18 17 36 36 H 1.09003 * 117.49498 * 145.02905 * 19 18 17 37 37 H 1.08995 * 117.49936 * 214.98149 * 20 18 17 38 38 H 1.09007 * 117.49866 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5418 -0.6150 1.3128 6 1 4.0789 -0.0863 0.5393 7 6 4.2304 -1.1937 2.3578 8 7 5.5409 -1.1005 2.4135 9 14 3.3014 -2.1089 3.6953 10 1 3.1697 -3.5388 3.3169 11 1 4.0453 -2.0023 4.9762 12 1 1.9507 -1.5130 3.8563 13 7 2.0196 -0.6925 -1.1994 14 6 2.0824 0.2225 -2.3469 15 6 2.5950 -0.5332 -3.5745 16 6 2.6610 0.4200 -4.7694 17 8 3.1403 -0.2858 -5.9158 18 6 3.2396 0.5177 -7.0934 19 6 2.8496 -0.1283 -8.4243 20 6 4.3212 0.1491 -8.1109 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.6053 -0.2618 2.1370 25 1 1.7515 -1.7715 1.2056 26 1 6.0254 -1.5073 3.1489 27 1 2.9172 -1.1205 -1.0287 28 1 2.7589 1.0461 -2.1182 29 1 1.0871 0.6163 -2.5525 30 1 1.9183 -1.3566 -3.8030 31 1 3.5904 -0.9273 -3.3690 32 1 3.3379 1.2431 -4.5406 33 1 1.6659 0.8144 -4.9749 34 1 3.0125 1.5755 -6.9613 35 1 2.5168 -1.1660 -8.4017 36 1 2.3655 0.5045 -9.1682 37 1 4.8053 0.9644 -8.6484 38 1 4.9573 -0.7059 -7.8818 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717315655.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:52 Heat of formation + Delta-G solvation = -56.243816 kcal Electronic energy + Delta-G solvation = -15391.408493 eV Core-core repulsion = 12847.400372 eV Total energy + Delta-G solvation = -2544.008122 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.58423 -38.47135 -36.32599 -34.95252 -33.74434 -30.63048 -29.55772 -25.69999 -24.32089 -23.29352 -22.96388 -22.15157 -20.99972 -18.97060 -18.13064 -17.13978 -16.49675 -16.44998 -16.08798 -15.85625 -14.95466 -14.84309 -14.35403 -14.23910 -13.72288 -13.50318 -13.29572 -13.11792 -12.73763 -12.50889 -12.41691 -12.32839 -12.13062 -11.96130 -11.77701 -11.63373 -11.38368 -11.27348 -11.19552 -10.76307 -10.07183 -9.24411 -8.28997 -6.32475 1.37858 1.38240 1.50380 2.36875 2.44234 2.91572 3.05376 3.47534 3.88968 3.95276 4.06898 4.11724 4.21324 4.24562 4.39078 4.46417 4.53401 4.58704 4.69060 4.72414 4.74483 4.75287 4.99505 5.02020 5.12705 5.14836 5.21332 5.23123 5.23756 5.38264 5.50843 5.67935 6.22715 6.28180 6.37871 6.55484 6.74032 7.32197 8.87203 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037503 B = 0.004296 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.435403 B = 6515.421524 C = 7057.519574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.096 3.904 3 H 0.022 0.978 4 C -0.014 4.014 5 C -0.526 4.526 6 H 0.032 0.968 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.950 3.050 10 H -0.269 1.269 11 H -0.287 1.287 12 H -0.247 1.247 13 N -0.688 5.688 14 C 0.068 3.932 15 C -0.109 4.109 16 C 0.072 3.928 17 O -0.383 6.383 18 C -0.004 4.004 19 C -0.183 4.183 20 C -0.187 4.187 21 H 0.061 0.939 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.025 0.975 25 H 0.022 0.978 26 H 0.265 0.735 27 H 0.341 0.659 28 H 0.017 0.983 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.128 0.872 35 H 0.090 0.910 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.020 4.221 -16.880 19.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.014 4.014 3 H 0.040 0.960 4 C -0.051 4.051 5 C -0.564 4.564 6 H 0.051 0.949 7 C -0.190 4.190 8 N -0.590 5.590 9 Si 0.774 3.226 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.170 1.170 13 N -0.320 5.320 14 C -0.062 4.062 15 C -0.147 4.147 16 C -0.004 4.004 17 O -0.303 6.303 18 C -0.062 4.062 19 C -0.221 4.221 20 C -0.224 4.224 21 H 0.080 0.920 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.043 0.957 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.160 0.840 28 H 0.035 0.965 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.145 0.855 35 H 0.109 0.891 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.455 3.739 -16.932 19.750 hybrid contribution 1.186 0.252 1.029 1.590 sum -8.270 3.991 -15.903 18.363 Atomic orbital electron populations 1.21743 0.93506 1.02002 1.01452 1.21369 0.95619 0.94758 0.89624 0.95960 1.19725 0.94070 0.96524 0.94802 1.21365 0.92185 1.34173 1.08668 0.94934 1.25963 0.95505 0.96881 1.00681 1.70065 1.08519 1.46905 1.33541 0.85653 0.79660 0.79339 0.77916 1.19436 1.21261 1.17027 1.60657 1.33927 1.32674 1.04744 1.21827 1.00626 0.93541 0.90192 1.21362 1.01562 0.98994 0.92762 1.22475 0.99062 0.94371 0.84508 1.87794 1.86324 1.37627 1.18525 1.22984 1.05380 0.95257 0.82568 1.23455 0.97805 1.02762 0.98040 1.23419 0.92520 1.04442 1.02027 0.92008 0.92503 0.92107 0.95671 0.95941 0.92596 0.84031 0.96463 0.89696 0.90730 0.93086 0.92743 0.91206 0.85462 0.89125 0.86020 0.86154 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 9.41 71.98 0.68 -3.34 16 2 C 0.10 3.77 2.59 44.92 0.12 3.89 16 3 H 0.02 0.93 7.80 -2.39 -0.02 0.91 16 4 C -0.01 -0.63 3.64 29.85 0.11 -0.53 16 5 C -0.53 -29.85 8.67 25.60 0.22 -29.63 16 6 H 0.03 2.03 7.73 -2.91 -0.02 2.00 16 7 C 0.01 0.39 5.47 84.66 0.46 0.85 16 8 N -0.95 -59.50 13.96 21.45 0.30 -59.20 16 9 Si 0.95 44.56 27.47 68.60 1.88 46.44 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 13 N -0.69 -26.12 6.31 -491.57 -3.10 -29.22 16 14 C 0.07 2.09 5.48 86.30 0.47 2.56 16 15 C -0.11 -3.11 5.84 30.59 0.18 -2.94 16 16 C 0.07 1.73 5.81 71.98 0.42 2.15 16 17 O -0.38 -10.18 10.60 -148.98 -1.58 -11.76 16 18 C 0.00 -0.08 6.44 30.59 0.20 0.11 16 19 C -0.18 -2.98 10.48 30.60 0.32 -2.66 16 20 C -0.19 -3.21 10.48 30.60 0.32 -2.89 16 21 H 0.06 1.66 7.45 -2.39 -0.02 1.64 16 22 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.03 1.15 7.20 -2.39 -0.02 1.14 16 25 H 0.02 1.04 7.57 -2.39 -0.02 1.03 16 26 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 27 H 0.34 14.94 7.21 -89.70 -0.65 14.29 16 28 H 0.02 0.56 8.06 -2.38 -0.02 0.54 16 29 H 0.08 2.27 7.44 -2.39 -0.02 2.25 16 30 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.13 1.94 7.93 -2.39 -0.02 1.92 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.12 1.37 8.14 -2.39 -0.02 1.36 16 37 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -65.11 311.52 1.30 -63.80 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.30 Total: 22.34 kcal Atomic # 6 Polarization: -35.90 SS G_CDS: 3.50 Total: -32.40 kcal Atomic # 7 Polarization: -85.62 SS G_CDS: -2.80 Total: -88.42 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -1.58 Total: -11.76 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.44 kcal Total: -65.11 1.30 -63.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717315655.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.560 kcal (2) G-P(sol) polarization free energy of solvation -65.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds