Wall clock time and date at job start Mon Mar 30 2020 04:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47210 * 2 1 4 4 C 1.53000 * 109.47064 * 239.99924 * 2 1 3 5 5 C 1.50701 * 109.47173 * 175.00659 * 4 2 1 6 6 H 1.08004 * 119.99635 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00060 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99803 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99908 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47409 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47176 * 119.99802 * 9 7 5 12 12 H 1.48505 * 109.47471 * 239.99936 * 9 7 5 13 13 N 1.46906 * 109.46736 * 120.00001 * 2 1 3 14 14 C 1.46901 * 110.99793 * 274.99642 * 13 2 1 15 15 C 1.53000 * 109.46769 * 179.97438 * 14 13 2 16 16 C 1.52997 * 109.47060 * 180.02562 * 15 14 13 17 17 O 1.42895 * 109.47503 * 180.02562 * 16 15 14 18 18 C 1.42902 * 114.00370 * 179.97438 * 17 16 15 19 19 C 1.52998 * 117.49859 * 218.61728 * 18 17 16 20 20 C 1.52996 * 60.00224 * 252.51152 * 19 18 17 21 21 H 1.08994 * 109.47210 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47326 * 300.00424 * 1 2 3 23 23 H 1.09001 * 109.46846 * 60.00014 * 1 2 3 24 24 H 1.09003 * 109.47172 * 294.99894 * 4 2 1 25 25 H 1.08996 * 109.47600 * 55.00354 * 4 2 1 26 26 H 0.97002 * 119.99533 * 180.02562 * 8 7 5 27 27 H 1.00898 * 110.99995 * 151.04565 * 13 2 1 28 28 H 1.09001 * 109.46874 * 60.00179 * 14 13 2 29 29 H 1.08992 * 109.47407 * 300.00197 * 14 13 2 30 30 H 1.09002 * 109.47398 * 300.00295 * 15 14 13 31 31 H 1.09001 * 109.47194 * 60.00475 * 15 14 13 32 32 H 1.09002 * 109.47153 * 300.00319 * 16 15 14 33 33 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 34 34 H 1.08998 * 115.54790 * 4.33182 * 18 17 16 35 35 H 1.08993 * 117.49864 * 0.02562 * 19 18 17 36 36 H 1.09005 * 117.49522 * 145.02185 * 19 18 17 37 37 H 1.08999 * 117.50037 * 252.51220 * 20 19 18 38 38 H 1.08999 * 117.51713 * 107.48427 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6151 -1.3127 6 1 4.0789 -0.0857 -0.5395 7 6 4.2304 -1.1937 -2.3577 8 7 3.5765 -1.8388 -3.2988 9 14 6.0920 -1.0615 -2.4366 10 1 6.5837 -0.2912 -1.2661 11 1 6.6862 -2.4223 -2.4180 12 1 6.4864 -0.3663 -3.6882 13 7 2.0196 -0.6925 1.1995 14 6 2.0824 0.2226 2.3469 15 6 2.5949 -0.5332 3.5745 16 6 2.6597 0.4197 4.7698 17 8 3.1389 -0.2860 5.9162 18 6 3.2383 0.5175 7.0938 19 6 4.4394 0.2805 8.0114 20 6 3.0450 -0.1788 8.4424 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.7516 -1.7716 -1.2056 25 1 1.6055 -0.2618 -2.1370 26 1 4.0610 -2.2462 -4.0339 27 1 2.9172 -1.1206 1.0289 28 1 1.0870 0.6164 2.5525 29 1 2.7588 1.0461 2.1183 30 1 1.9181 -1.3566 3.8030 31 1 3.5902 -0.9273 3.3692 32 1 3.3363 1.2433 4.5415 33 1 1.6643 0.8135 4.9750 34 1 2.8716 1.5394 6.9979 35 1 5.1539 -0.4880 7.7167 36 1 4.8633 1.1468 8.5194 37 1 2.5516 0.3853 9.2339 38 1 2.8418 -1.2496 8.4315 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717315658.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:55 Heat of formation + Delta-G solvation = -39.979526 kcal Electronic energy + Delta-G solvation = -15383.641343 eV Core-core repulsion = 12840.338494 eV Total energy + Delta-G solvation = -2543.302849 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.70142 -36.91506 -35.34359 -33.23981 -31.98570 -28.92156 -27.38255 -24.34050 -22.84430 -22.61861 -22.14851 -20.95859 -19.32871 -17.26573 -16.36740 -15.93952 -15.44945 -14.90932 -14.70400 -14.37761 -13.88870 -13.34008 -13.01015 -12.61987 -12.03493 -11.83869 -11.76646 -11.58934 -11.51553 -11.25853 -10.99207 -10.88639 -10.76229 -10.63869 -10.52359 -10.44049 -10.14099 -9.24351 -9.22301 -9.05261 -8.39676 -7.64457 -6.02613 -4.05757 3.29294 3.32049 3.37274 3.40260 3.62845 4.43525 4.58112 4.72808 4.75740 5.05104 5.11576 5.17760 5.33189 5.38110 5.39758 5.48812 5.61856 5.69160 5.76908 5.90093 5.91550 6.02398 6.22477 6.30076 6.37918 6.40530 6.56864 6.94101 6.95908 7.15102 7.53414 7.64556 7.97058 8.07008 8.28468 8.37982 9.00608 9.58586 11.08351 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027258 B = 0.004645 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.963297 B = 6026.759047 C = 6885.889059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.087 3.913 3 H 0.029 0.971 4 C 0.019 3.981 5 C -0.524 4.524 6 H 0.052 0.948 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.890 3.110 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.683 5.683 14 C 0.064 3.936 15 C -0.117 4.117 16 C 0.067 3.933 17 O -0.356 6.356 18 C 0.018 3.982 19 C -0.192 4.192 20 C -0.186 4.186 21 H 0.055 0.945 22 H 0.035 0.965 23 H 0.048 0.952 24 H 0.026 0.974 25 H 0.021 0.979 26 H 0.260 0.740 27 H 0.355 0.645 28 H 0.063 0.937 29 H 0.023 0.977 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.939 5.574 18.252 19.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.047 0.953 4 C -0.018 4.018 5 C -0.562 4.562 6 H 0.070 0.930 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.718 3.282 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.317 5.317 14 C -0.066 4.066 15 C -0.154 4.154 16 C -0.010 4.010 17 O -0.275 6.275 18 C -0.041 4.041 19 C -0.229 4.229 20 C -0.223 4.223 21 H 0.074 0.926 22 H 0.054 0.946 23 H 0.067 0.933 24 H 0.045 0.955 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.176 0.824 28 H 0.081 0.919 29 H 0.042 0.958 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.482 5.028 18.226 19.069 hybrid contribution 1.799 0.850 -0.351 2.021 sum -0.683 5.878 17.874 18.829 Atomic orbital electron populations 1.21796 0.96739 1.01346 0.99427 1.21616 0.93353 0.95850 0.91401 0.95341 1.19291 0.95436 0.96246 0.90812 1.21213 0.92242 1.34417 1.08332 0.92979 1.24992 0.98278 0.95176 0.95700 1.69973 1.35410 1.35596 1.11998 0.86575 0.85932 0.77810 0.77901 1.19854 1.20931 1.21049 1.60537 1.34832 1.32010 1.04343 1.21787 0.99563 0.94234 0.91060 1.21492 1.02898 0.98773 0.92285 1.22570 0.97834 0.95198 0.85416 1.87845 1.86014 1.36154 1.17459 1.22636 1.02637 0.94942 0.83836 1.23381 0.92152 1.03989 1.03360 1.23328 0.99627 1.02115 0.97244 0.92619 0.94555 0.93325 0.95540 0.96034 0.92995 0.82394 0.91850 0.95840 0.90399 0.91147 0.93245 0.93154 0.87370 0.88147 0.88370 0.88305 0.88151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.41 37.16 0.35 -2.11 16 2 C 0.09 1.83 2.59 -67.71 -0.18 1.66 16 3 H 0.03 0.61 7.80 -51.93 -0.40 0.21 16 4 C 0.02 0.50 4.57 -27.88 -0.13 0.37 16 5 C -0.52 -14.47 8.12 -34.44 -0.28 -14.75 16 6 H 0.05 1.40 7.49 -52.48 -0.39 1.01 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 9 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 N -0.68 -13.30 6.31 -106.72 -0.67 -13.97 16 14 C 0.06 1.01 5.48 -3.82 -0.02 0.99 16 15 C -0.12 -1.66 5.84 -26.73 -0.16 -1.82 16 16 C 0.07 0.82 5.81 37.16 0.22 1.03 16 17 O -0.36 -4.76 10.60 -35.23 -0.37 -5.13 16 18 C 0.02 0.19 6.44 -26.73 -0.17 0.01 16 19 C -0.19 -1.73 10.48 -26.73 -0.28 -2.01 16 20 C -0.19 -1.64 10.48 -26.73 -0.28 -1.92 16 21 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 22 H 0.04 0.58 7.45 -51.93 -0.39 0.19 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.36 7.51 7.21 -39.29 -0.28 7.23 16 28 H 0.06 0.94 7.44 -51.93 -0.39 0.56 16 29 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.11 0.92 7.93 -51.93 -0.41 0.51 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 315.12 15.07 4.75 4.75 Total: -1.00 -29.66 315.12 -8.50 -38.16 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.89 Total: 2.49 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -1.02 Total: -16.93 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.06 Total: -39.83 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.37 Total: -5.13 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.66 -8.50 -38.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717315658.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.817 kcal (2) G-P(sol) polarization free energy of solvation -29.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds