Wall clock time and date at job start Mon Mar 30 2020 04:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47210 * 2 1 4 4 C 1.53000 * 109.47064 * 239.99924 * 2 1 3 5 5 C 1.50701 * 109.47173 * 175.00659 * 4 2 1 6 6 H 1.08004 * 119.99635 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00060 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99803 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99908 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47409 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47176 * 119.99802 * 9 7 5 12 12 H 1.48505 * 109.47471 * 239.99936 * 9 7 5 13 13 N 1.46906 * 109.46736 * 120.00001 * 2 1 3 14 14 C 1.46901 * 110.99793 * 274.99642 * 13 2 1 15 15 C 1.53000 * 109.46769 * 179.97438 * 14 13 2 16 16 C 1.52997 * 109.47060 * 180.02562 * 15 14 13 17 17 O 1.42895 * 109.47503 * 180.02562 * 16 15 14 18 18 C 1.42902 * 114.00370 * 179.97438 * 17 16 15 19 19 C 1.52998 * 117.49859 * 218.61728 * 18 17 16 20 20 C 1.52996 * 60.00224 * 252.51152 * 19 18 17 21 21 H 1.08994 * 109.47210 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47326 * 300.00424 * 1 2 3 23 23 H 1.09001 * 109.46846 * 60.00014 * 1 2 3 24 24 H 1.09003 * 109.47172 * 294.99894 * 4 2 1 25 25 H 1.08996 * 109.47600 * 55.00354 * 4 2 1 26 26 H 0.97002 * 119.99533 * 180.02562 * 8 7 5 27 27 H 1.00898 * 110.99995 * 151.04565 * 13 2 1 28 28 H 1.09001 * 109.46874 * 60.00179 * 14 13 2 29 29 H 1.08992 * 109.47407 * 300.00197 * 14 13 2 30 30 H 1.09002 * 109.47398 * 300.00295 * 15 14 13 31 31 H 1.09001 * 109.47194 * 60.00475 * 15 14 13 32 32 H 1.09002 * 109.47153 * 300.00319 * 16 15 14 33 33 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 34 34 H 1.08998 * 115.54790 * 4.33182 * 18 17 16 35 35 H 1.08993 * 117.49864 * 0.02562 * 19 18 17 36 36 H 1.09005 * 117.49522 * 145.02185 * 19 18 17 37 37 H 1.08999 * 117.50037 * 252.51220 * 20 19 18 38 38 H 1.08999 * 117.51713 * 107.48427 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6151 -1.3127 6 1 4.0789 -0.0857 -0.5395 7 6 4.2304 -1.1937 -2.3577 8 7 3.5765 -1.8388 -3.2988 9 14 6.0920 -1.0615 -2.4366 10 1 6.5837 -0.2912 -1.2661 11 1 6.6862 -2.4223 -2.4180 12 1 6.4864 -0.3663 -3.6882 13 7 2.0196 -0.6925 1.1995 14 6 2.0824 0.2226 2.3469 15 6 2.5949 -0.5332 3.5745 16 6 2.6597 0.4197 4.7698 17 8 3.1389 -0.2860 5.9162 18 6 3.2383 0.5175 7.0938 19 6 4.4394 0.2805 8.0114 20 6 3.0450 -0.1788 8.4424 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.7516 -1.7716 -1.2056 25 1 1.6055 -0.2618 -2.1370 26 1 4.0610 -2.2462 -4.0339 27 1 2.9172 -1.1206 1.0289 28 1 1.0870 0.6164 2.5525 29 1 2.7588 1.0461 2.1183 30 1 1.9181 -1.3566 3.8030 31 1 3.5902 -0.9273 3.3692 32 1 3.3363 1.2433 4.5415 33 1 1.6643 0.8135 4.9750 34 1 2.8716 1.5394 6.9979 35 1 5.1539 -0.4880 7.7167 36 1 4.8633 1.1468 8.5194 37 1 2.5516 0.3853 9.2339 38 1 2.8418 -1.2496 8.4315 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717315658.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:55 Heat of formation + Delta-G solvation = -58.688035 kcal Electronic energy + Delta-G solvation = -15384.452605 eV Core-core repulsion = 12840.338494 eV Total energy + Delta-G solvation = -2544.114111 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.57339 -38.43136 -36.31294 -34.99951 -33.62315 -30.36848 -29.27797 -25.73176 -24.67569 -23.28835 -22.95393 -22.13389 -21.04088 -18.52558 -18.12060 -17.13367 -16.64341 -16.42535 -15.98446 -15.84846 -14.93462 -14.84692 -14.43873 -13.85032 -13.56382 -13.44445 -13.15498 -13.09254 -12.71165 -12.59462 -12.41532 -12.37329 -12.25787 -12.08839 -11.95846 -11.62141 -11.36898 -11.20089 -10.99405 -10.58825 -10.06289 -9.19931 -8.20212 -6.30822 1.38702 1.39836 1.51621 2.39684 2.45239 2.92289 3.11859 3.49797 3.89634 3.97311 4.07615 4.13940 4.23180 4.30554 4.40959 4.49201 4.55608 4.62545 4.71878 4.74946 4.75684 4.77309 4.99396 5.02153 5.16809 5.22807 5.23540 5.25466 5.34635 5.49610 5.56046 5.83902 6.20170 6.29490 6.42464 6.62724 6.84763 7.38154 8.91706 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027258 B = 0.004645 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.963297 B = 6026.759047 C = 6885.889059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.094 3.906 3 H 0.027 0.973 4 C 0.026 3.974 5 C -0.534 4.534 6 H 0.057 0.943 7 C 0.004 3.996 8 N -0.930 5.930 9 Si 0.961 3.039 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.280 1.280 13 N -0.689 5.689 14 C 0.067 3.933 15 C -0.109 4.109 16 C 0.072 3.928 17 O -0.383 6.383 18 C -0.003 4.003 19 C -0.191 4.191 20 C -0.180 4.180 21 H 0.048 0.952 22 H 0.063 0.937 23 H 0.053 0.947 24 H -0.003 1.003 25 H -0.004 1.004 26 H 0.263 0.737 27 H 0.342 0.658 28 H 0.080 0.920 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.128 0.872 35 H 0.087 0.913 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.535 6.927 20.055 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.015 4.015 3 H 0.045 0.955 4 C -0.012 4.012 5 C -0.573 4.573 6 H 0.075 0.925 7 C -0.195 4.195 8 N -0.571 5.571 9 Si 0.787 3.213 10 H -0.188 1.188 11 H -0.205 1.205 12 H -0.205 1.205 13 N -0.321 5.321 14 C -0.062 4.062 15 C -0.147 4.147 16 C -0.005 4.005 17 O -0.303 6.303 18 C -0.061 4.061 19 C -0.228 4.228 20 C -0.218 4.218 21 H 0.067 0.933 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.015 0.985 25 H 0.014 0.986 26 H 0.072 0.928 27 H 0.161 0.839 28 H 0.099 0.901 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.146 0.854 35 H 0.106 0.894 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.090 6.394 20.053 21.151 hybrid contribution 1.648 0.415 -0.877 1.913 sum -0.442 6.809 19.176 20.354 Atomic orbital electron populations 1.21715 0.94359 1.01434 1.01067 1.21445 0.95233 0.94842 0.89990 0.95543 1.19158 0.94882 0.94760 0.92373 1.21558 0.93302 1.34068 1.08326 0.92474 1.25902 1.03413 0.94802 0.95346 1.70102 1.37502 1.36676 1.12780 0.85453 0.79741 0.77944 0.78210 1.18761 1.20518 1.20536 1.60582 1.34019 1.32873 1.04669 1.21838 1.00666 0.93639 0.90095 1.21363 1.01721 0.98907 0.92693 1.22482 0.99029 0.94434 0.84506 1.87792 1.86372 1.37584 1.18522 1.22979 1.04044 0.95798 0.83250 1.23456 0.91943 1.04442 1.02978 1.23411 0.99561 1.01799 0.96986 0.93313 0.91773 0.92814 0.98492 0.98556 0.92807 0.83870 0.90137 0.95782 0.91096 0.92570 0.92458 0.91426 0.85407 0.89420 0.86257 0.85987 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 9.41 71.98 0.68 -3.81 16 2 C 0.09 3.94 2.59 44.91 0.12 4.06 16 3 H 0.03 1.11 7.80 -2.39 -0.02 1.10 16 4 C 0.03 1.35 4.57 29.85 0.14 1.49 16 5 C -0.53 -29.85 8.12 25.60 0.21 -29.65 16 6 H 0.06 3.07 7.49 -2.91 -0.02 3.05 16 7 C 0.00 0.20 5.46 84.65 0.46 0.66 16 8 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 9 Si 0.96 44.26 29.54 68.60 2.03 46.28 16 10 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 N -0.69 -26.49 6.31 -491.57 -3.10 -29.59 16 14 C 0.07 2.01 5.48 86.30 0.47 2.49 16 15 C -0.11 -2.98 5.84 30.59 0.18 -2.80 16 16 C 0.07 1.63 5.81 71.98 0.42 2.05 16 17 O -0.38 -9.75 10.60 -148.98 -1.58 -11.33 16 18 C 0.00 -0.06 6.44 30.59 0.20 0.14 16 19 C -0.19 -3.11 10.48 30.59 0.32 -2.79 16 20 C -0.18 -2.83 10.48 30.59 0.32 -2.51 16 21 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.06 1.89 7.45 -2.39 -0.02 1.87 16 23 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 25 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 26 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 27 H 0.34 14.59 7.21 -89.70 -0.65 13.94 16 28 H 0.08 2.16 7.44 -2.39 -0.02 2.14 16 29 H 0.02 0.73 8.05 -2.39 -0.02 0.71 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.13 1.82 7.93 -2.39 -0.02 1.80 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -63.85 315.12 1.50 -62.35 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.36 Total: 19.26 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: 3.51 Total: -30.67 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -2.82 Total: -85.90 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -1.58 Total: -11.33 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -63.85 1.50 -62.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717315658.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.666 kcal (2) G-P(sol) polarization free energy of solvation -63.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds