Wall clock time and date at job start Mon Mar 30 2020 04:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47144 * 2 1 4 4 C 1.53002 * 109.47335 * 120.00764 * 2 1 3 5 5 C 1.50698 * 109.47052 * 184.99638 * 4 2 1 6 6 H 1.07997 * 119.99830 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99838 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99801 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00121 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47270 * 89.99445 * 9 7 5 11 11 H 1.48502 * 109.47009 * 209.99835 * 9 7 5 12 12 H 1.48501 * 109.47158 * 329.99645 * 9 7 5 13 13 N 1.46905 * 109.46746 * 240.00483 * 2 1 3 14 14 C 1.46906 * 110.99859 * 85.00156 * 13 2 1 15 15 C 1.52995 * 109.46805 * 184.80972 * 14 13 2 16 16 C 1.53005 * 112.85181 * 294.22839 * 15 14 13 17 17 O 1.42895 * 109.46796 * 305.96078 * 16 15 14 18 18 C 1.53781 * 113.61698 * 65.42745 * 15 14 13 19 19 C 1.53783 * 87.08027 * 89.19707 * 18 15 14 20 20 C 1.53781 * 87.17180 * 25.39464 * 19 18 15 21 21 H 1.09004 * 109.47192 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46971 * 299.99291 * 1 2 3 23 23 H 1.08995 * 109.47262 * 59.99650 * 1 2 3 24 24 H 1.09000 * 109.46918 * 305.00079 * 4 2 1 25 25 H 1.09002 * 109.47051 * 64.99581 * 4 2 1 26 26 H 0.97005 * 120.00285 * 180.02562 * 8 7 5 27 27 H 1.00902 * 111.00080 * 321.04711 * 13 2 1 28 28 H 1.08996 * 109.47153 * 64.80634 * 14 13 2 29 29 H 1.09006 * 109.46818 * 304.80704 * 14 13 2 30 30 H 1.09000 * 109.46666 * 65.95868 * 16 15 14 31 31 H 1.09001 * 109.46843 * 185.96264 * 16 15 14 32 32 H 0.96699 * 114.00012 * 179.97438 * 17 16 15 33 33 H 1.08998 * 113.61326 * 334.65242 * 18 15 14 34 34 H 1.08996 * 113.69293 * 203.75654 * 18 15 14 35 35 H 1.09003 * 113.61220 * 139.98315 * 19 18 15 36 36 H 1.08996 * 113.61377 * 270.79644 * 19 18 15 37 37 H 1.08995 * 113.61789 * 89.16105 * 20 19 18 38 38 H 1.09004 * 113.60686 * 220.05793 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5420 -0.6151 1.3125 6 1 4.0789 -0.0856 0.5394 7 6 4.2305 -1.1930 2.3580 8 7 5.5411 -1.0998 2.4136 9 14 3.3016 -2.1082 3.6955 10 1 3.1709 -3.5383 3.3175 11 1 4.0450 -2.0008 4.9766 12 1 1.9506 -1.5131 3.8558 13 7 2.0196 -0.6924 -1.1996 14 6 2.0824 0.2228 -2.3470 15 6 2.4802 -0.5581 -3.6010 16 6 3.9017 -1.1191 -3.5258 17 8 4.8160 -0.0614 -3.2306 18 6 1.4317 -1.5939 -4.0401 19 6 0.7916 -0.4744 -4.8780 20 6 2.1790 0.1880 -4.9136 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.6055 -0.2620 2.1369 25 1 1.7517 -1.7717 1.2054 26 1 6.0256 -1.5066 3.1490 27 1 1.4495 -1.4978 -1.4102 28 1 2.8223 0.9991 -2.1524 29 1 1.1056 0.6819 -2.4994 30 1 3.9534 -1.8736 -2.7409 31 1 4.1651 -1.5708 -4.4821 32 1 5.7384 -0.3449 -3.1674 33 1 0.7985 -1.9463 -3.2260 34 1 1.8429 -2.4066 -4.6388 35 1 0.4411 -0.8064 -5.8552 36 1 0.0449 0.1048 -4.3349 37 1 2.7962 -0.1359 -5.7515 38 1 2.1481 1.2720 -4.8035 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717650409.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:58 Heat of formation + Delta-G solvation = -40.338580 kcal Electronic energy + Delta-G solvation = -16602.995363 eV Core-core repulsion = 14059.676944 eV Total energy + Delta-G solvation = -2543.318419 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.70862 -36.26632 -35.68922 -32.49585 -30.69496 -28.04757 -27.47997 -25.74499 -24.52869 -22.49607 -21.86478 -19.67993 -17.99847 -16.85314 -16.49248 -15.83221 -15.14950 -14.56591 -14.21396 -14.01331 -13.62192 -13.30067 -12.62212 -12.49861 -12.29853 -12.15303 -11.97412 -11.62310 -11.61608 -11.17270 -11.15387 -10.70797 -10.41637 -10.08561 -10.02893 -10.00606 -9.69234 -9.49216 -9.39279 -8.94277 -8.35419 -7.46382 -5.83569 -3.76379 3.40294 3.47370 3.50410 4.34871 4.60605 4.63700 4.73795 4.88548 5.01788 5.28838 5.36599 5.51430 5.62298 5.68294 5.70355 5.74982 5.81004 5.90706 5.92929 5.97205 6.01836 6.10417 6.14146 6.38616 6.41490 6.49905 6.55166 6.67727 6.89423 7.24867 7.39578 7.91255 8.00548 8.10437 8.21824 8.81649 9.30786 9.79942 11.30698 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030451 B = 0.007546 C = 0.006529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.283313 B = 3709.670456 C = 4287.384026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.099 3.901 3 H 0.069 0.931 4 C -0.004 4.004 5 C -0.484 4.484 6 H 0.079 0.921 7 C 0.059 3.941 8 N -0.911 5.911 9 Si 0.874 3.126 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.269 1.269 13 N -0.658 5.658 14 C 0.091 3.909 15 C -0.073 4.073 16 C 0.101 3.899 17 O -0.565 6.565 18 C -0.131 4.131 19 C -0.142 4.142 20 C -0.127 4.127 21 H 0.049 0.951 22 H 0.055 0.945 23 H 0.040 0.960 24 H 0.015 0.985 25 H 0.010 0.990 26 H 0.258 0.742 27 H 0.325 0.675 28 H 0.080 0.920 29 H 0.017 0.983 30 H 0.059 0.941 31 H 0.029 0.971 32 H 0.375 0.625 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.486 -0.092 -13.593 16.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.011 4.011 3 H 0.088 0.912 4 C -0.041 4.041 5 C -0.522 4.522 6 H 0.097 0.903 7 C -0.140 4.140 8 N -0.552 5.552 9 Si 0.702 3.298 10 H -0.207 1.207 11 H -0.218 1.218 12 H -0.194 1.194 13 N -0.288 5.288 14 C -0.039 4.039 15 C -0.073 4.073 16 C 0.023 3.977 17 O -0.369 6.369 18 C -0.169 4.169 19 C -0.179 4.179 20 C -0.165 4.165 21 H 0.068 0.932 22 H 0.075 0.925 23 H 0.059 0.941 24 H 0.033 0.967 25 H 0.028 0.972 26 H 0.068 0.932 27 H 0.143 0.857 28 H 0.099 0.901 29 H 0.035 0.965 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.222 0.778 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.225 0.296 -13.314 15.652 hybrid contribution -0.841 -0.896 0.574 1.356 sum -9.065 -0.600 -12.740 15.647 Atomic orbital electron populations 1.22597 0.99683 1.01057 1.00819 1.21535 0.89482 0.98383 0.91666 0.91249 1.19605 0.97904 0.94975 0.91640 1.21081 0.89524 1.33343 1.08283 0.90312 1.25013 0.94670 0.96473 0.97840 1.69920 1.06383 1.46520 1.32331 0.86887 0.80366 0.80583 0.81968 1.20702 1.21767 1.19411 1.60443 1.57306 1.08528 1.02492 1.21613 0.98385 0.95218 0.88641 1.21887 0.93809 0.96678 0.94930 1.21947 0.88276 0.89661 0.97776 1.86447 1.20097 1.35910 1.94469 1.22926 0.97737 0.96599 0.99597 1.22826 0.96996 0.98204 0.99923 1.22951 0.96318 1.00015 0.97186 0.93189 0.92548 0.94086 0.96708 0.97205 0.93236 0.85692 0.90138 0.96548 0.92295 0.95248 0.77828 0.91318 0.90134 0.91804 0.90420 0.90333 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.97 9.16 37.16 0.34 -2.63 16 2 C 0.10 1.99 2.53 -67.71 -0.17 1.82 16 3 H 0.07 1.48 7.86 -51.93 -0.41 1.07 16 4 C 0.00 -0.09 3.72 -27.88 -0.10 -0.19 16 5 C -0.48 -14.07 9.39 -34.44 -0.32 -14.40 16 6 H 0.08 2.52 7.99 -52.49 -0.42 2.10 16 7 C 0.06 1.76 5.47 -17.82 -0.10 1.66 16 8 N -0.91 -28.86 13.96 55.43 0.77 -28.09 16 9 Si 0.87 22.37 27.47 -169.99 -4.67 17.70 16 10 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.27 -6.62 6.54 56.52 0.37 -6.25 16 13 N -0.66 -12.40 5.84 -106.72 -0.62 -13.03 16 14 C 0.09 1.51 4.65 -3.82 -0.02 1.49 16 15 C -0.07 -1.03 0.84 -153.60 -0.13 -1.15 16 16 C 0.10 1.53 6.28 37.16 0.23 1.76 16 17 O -0.56 -9.43 12.92 -35.23 -0.46 -9.89 16 18 C -0.13 -1.55 7.03 -25.92 -0.18 -1.73 16 19 C -0.14 -1.53 7.72 -25.92 -0.20 -1.73 16 20 C -0.13 -1.53 7.24 -25.83 -0.19 -1.72 16 21 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.04 0.59 7.39 -51.93 -0.38 0.21 16 24 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 25 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 26 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 27 H 0.33 5.62 6.91 -39.29 -0.27 5.34 16 28 H 0.08 1.56 7.60 -51.93 -0.39 1.16 16 29 H 0.02 0.25 6.52 -51.93 -0.34 -0.08 16 30 H 0.06 1.01 8.13 -51.93 -0.42 0.58 16 31 H 0.03 0.38 8.06 -51.93 -0.42 -0.04 16 32 H 0.38 4.94 9.12 45.56 0.42 5.36 16 33 H 0.07 0.83 6.82 -51.93 -0.35 0.48 16 34 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.84 7.62 -51.93 -0.40 0.45 16 37 H 0.08 0.88 8.05 -51.93 -0.42 0.46 16 38 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 LS Contribution 300.72 15.07 4.53 4.53 Total: -1.00 -32.30 300.72 -7.13 -39.43 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.85 Total: 6.15 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -0.84 Total: -16.81 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.15 Total: -41.12 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -0.46 Total: -9.89 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.67 Total: 17.70 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.30 -7.13 -39.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717650409.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.907 kcal (2) G-P(sol) polarization free energy of solvation -32.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds