Wall clock time and date at job start Mon Mar 30 2020 04:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47144 * 2 1 4 4 C 1.53002 * 109.47335 * 120.00764 * 2 1 3 5 5 C 1.50698 * 109.47052 * 184.99638 * 4 2 1 6 6 H 1.07997 * 119.99830 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99838 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99801 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00121 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47270 * 89.99445 * 9 7 5 11 11 H 1.48502 * 109.47009 * 209.99835 * 9 7 5 12 12 H 1.48501 * 109.47158 * 329.99645 * 9 7 5 13 13 N 1.46905 * 109.46746 * 240.00483 * 2 1 3 14 14 C 1.46906 * 110.99859 * 85.00156 * 13 2 1 15 15 C 1.52995 * 109.46805 * 184.80972 * 14 13 2 16 16 C 1.53005 * 112.85181 * 294.22839 * 15 14 13 17 17 O 1.42895 * 109.46796 * 305.96078 * 16 15 14 18 18 C 1.53781 * 113.61698 * 65.42745 * 15 14 13 19 19 C 1.53783 * 87.08027 * 89.19707 * 18 15 14 20 20 C 1.53781 * 87.17180 * 25.39464 * 19 18 15 21 21 H 1.09004 * 109.47192 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46971 * 299.99291 * 1 2 3 23 23 H 1.08995 * 109.47262 * 59.99650 * 1 2 3 24 24 H 1.09000 * 109.46918 * 305.00079 * 4 2 1 25 25 H 1.09002 * 109.47051 * 64.99581 * 4 2 1 26 26 H 0.97005 * 120.00285 * 180.02562 * 8 7 5 27 27 H 1.00902 * 111.00080 * 321.04711 * 13 2 1 28 28 H 1.08996 * 109.47153 * 64.80634 * 14 13 2 29 29 H 1.09006 * 109.46818 * 304.80704 * 14 13 2 30 30 H 1.09000 * 109.46666 * 65.95868 * 16 15 14 31 31 H 1.09001 * 109.46843 * 185.96264 * 16 15 14 32 32 H 0.96699 * 114.00012 * 179.97438 * 17 16 15 33 33 H 1.08998 * 113.61326 * 334.65242 * 18 15 14 34 34 H 1.08996 * 113.69293 * 203.75654 * 18 15 14 35 35 H 1.09003 * 113.61220 * 139.98315 * 19 18 15 36 36 H 1.08996 * 113.61377 * 270.79644 * 19 18 15 37 37 H 1.08995 * 113.61789 * 89.16105 * 20 19 18 38 38 H 1.09004 * 113.60686 * 220.05793 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5420 -0.6151 1.3125 6 1 4.0789 -0.0856 0.5394 7 6 4.2305 -1.1930 2.3580 8 7 5.5411 -1.0998 2.4136 9 14 3.3016 -2.1082 3.6955 10 1 3.1709 -3.5383 3.3175 11 1 4.0450 -2.0008 4.9766 12 1 1.9506 -1.5131 3.8558 13 7 2.0196 -0.6924 -1.1996 14 6 2.0824 0.2228 -2.3470 15 6 2.4802 -0.5581 -3.6010 16 6 3.9017 -1.1191 -3.5258 17 8 4.8160 -0.0614 -3.2306 18 6 1.4317 -1.5939 -4.0401 19 6 0.7916 -0.4744 -4.8780 20 6 2.1790 0.1880 -4.9136 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.6055 -0.2620 2.1369 25 1 1.7517 -1.7717 1.2054 26 1 6.0256 -1.5066 3.1490 27 1 1.4495 -1.4978 -1.4102 28 1 2.8223 0.9991 -2.1524 29 1 1.1056 0.6819 -2.4994 30 1 3.9534 -1.8736 -2.7409 31 1 4.1651 -1.5708 -4.4821 32 1 5.7384 -0.3449 -3.1674 33 1 0.7985 -1.9463 -3.2260 34 1 1.8429 -2.4066 -4.6388 35 1 0.4411 -0.8064 -5.8552 36 1 0.0449 0.1048 -4.3349 37 1 2.7962 -0.1359 -5.7515 38 1 2.1481 1.2720 -4.8035 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717650409.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:57 Heat of formation + Delta-G solvation = -64.756436 kcal Electronic energy + Delta-G solvation = -16604.054201 eV Core-core repulsion = 14059.676944 eV Total energy + Delta-G solvation = -2544.377256 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.80075 -37.81854 -36.94345 -34.66005 -32.31198 -29.71803 -28.83212 -26.74380 -25.87799 -24.40827 -22.92166 -21.38324 -19.12523 -18.73715 -18.13356 -17.02089 -16.47824 -16.21912 -15.81815 -15.27456 -14.95703 -14.91242 -14.32522 -13.85340 -13.72470 -13.68248 -13.36340 -13.17085 -12.82988 -12.58862 -12.52772 -12.23031 -11.87483 -11.69363 -11.58378 -11.28044 -11.12465 -11.10011 -11.02887 -10.65756 -10.60689 -8.91938 -8.15015 -6.13578 1.37804 1.39841 1.51005 2.43907 3.14062 3.24195 3.54189 3.73995 3.80322 3.96789 4.09785 4.22013 4.28927 4.40820 4.53428 4.56758 4.72205 4.79904 4.86185 4.86589 4.91784 4.98776 4.99818 5.11931 5.14555 5.19994 5.22837 5.34370 5.46112 5.55156 5.56519 5.78386 6.37570 6.54770 6.81322 6.95065 6.95892 7.46365 9.02795 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030451 B = 0.007546 C = 0.006529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.283313 B = 3709.670456 C = 4287.384026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.101 3.899 3 H 0.046 0.954 4 C -0.001 4.001 5 C -0.487 4.487 6 H 0.029 0.971 7 C -0.007 4.007 8 N -0.960 5.960 9 Si 0.948 3.052 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.248 1.248 13 N -0.677 5.677 14 C 0.100 3.900 15 C -0.087 4.087 16 C 0.099 3.901 17 O -0.589 6.589 18 C -0.124 4.124 19 C -0.129 4.129 20 C -0.123 4.123 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.019 0.981 25 H 0.016 0.984 26 H 0.260 0.740 27 H 0.336 0.664 28 H 0.041 0.959 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.058 0.942 32 H 0.386 0.614 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.223 -1.160 -14.308 18.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.009 4.009 3 H 0.064 0.936 4 C -0.038 4.038 5 C -0.526 4.526 6 H 0.048 0.952 7 C -0.201 4.201 8 N -0.603 5.603 9 Si 0.773 3.227 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.171 1.171 13 N -0.309 5.309 14 C -0.029 4.029 15 C -0.088 4.088 16 C 0.022 3.978 17 O -0.396 6.396 18 C -0.162 4.162 19 C -0.167 4.167 20 C -0.161 4.161 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.037 0.963 25 H 0.034 0.966 26 H 0.068 0.932 27 H 0.155 0.845 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.234 0.766 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.981 -0.768 -14.048 17.847 hybrid contribution 0.132 -0.508 0.738 0.905 sum -10.849 -1.276 -13.311 17.219 Atomic orbital electron populations 1.22421 0.95854 1.02356 1.02190 1.21324 0.92428 0.96465 0.90648 0.93591 1.19560 0.94432 0.95839 0.94018 1.21301 0.92197 1.32247 1.06827 0.95247 1.25985 0.95559 0.97722 1.00820 1.70099 1.08495 1.48156 1.33570 0.85691 0.79623 0.79286 0.78116 1.19656 1.21558 1.17115 1.60265 1.58153 1.09487 1.02985 1.21444 0.98009 0.94392 0.89042 1.21990 0.93735 0.98260 0.94770 1.22068 0.88906 0.88799 0.98065 1.86423 1.21276 1.37207 1.94667 1.22942 0.96641 0.96772 0.99835 1.22774 0.95980 0.97075 1.00823 1.22962 0.97633 0.99467 0.96035 0.91857 0.91893 0.92055 0.96308 0.96560 0.93154 0.84464 0.94065 0.94827 0.95141 0.92389 0.76621 0.91451 0.88632 0.89562 0.90349 0.89095 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.04 9.16 71.98 0.66 -4.38 16 2 C 0.10 4.04 2.53 44.92 0.11 4.16 16 3 H 0.05 2.02 7.86 -2.39 -0.02 2.00 16 4 C 0.00 -0.03 3.72 29.85 0.11 0.08 16 5 C -0.49 -29.22 9.39 25.60 0.24 -28.98 16 6 H 0.03 2.00 7.99 -2.91 -0.02 1.97 16 7 C -0.01 -0.40 5.47 84.66 0.46 0.06 16 8 N -0.96 -62.86 13.96 21.45 0.30 -62.56 16 9 Si 0.95 46.07 27.47 68.60 1.88 47.96 16 10 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 12 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 13 N -0.68 -25.62 5.84 -491.55 -2.87 -28.49 16 14 C 0.10 3.35 4.65 86.30 0.40 3.75 16 15 C -0.09 -2.39 0.84 -51.60 -0.04 -2.43 16 16 C 0.10 3.02 6.28 71.98 0.45 3.47 16 17 O -0.59 -20.57 12.92 -148.98 -1.92 -22.50 16 18 C -0.12 -2.61 7.03 31.12 0.22 -2.40 16 19 C -0.13 -2.35 7.72 31.12 0.24 -2.11 16 20 C -0.12 -2.73 7.24 31.18 0.23 -2.50 16 21 H 0.06 1.73 8.13 -2.39 -0.02 1.71 16 22 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 23 H 0.06 1.58 7.39 -2.39 -0.02 1.57 16 24 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 25 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 26 H 0.26 15.93 8.31 -92.70 -0.77 15.16 16 27 H 0.34 11.23 6.91 -89.69 -0.62 10.61 16 28 H 0.04 1.68 7.60 -2.39 -0.02 1.66 16 29 H 0.03 1.00 6.52 -2.38 -0.02 0.98 16 30 H 0.03 1.08 8.13 -2.39 -0.02 1.06 16 31 H 0.06 1.41 8.06 -2.39 -0.02 1.39 16 32 H 0.39 10.84 9.12 -74.06 -0.68 10.16 16 33 H 0.07 1.44 6.82 -2.39 -0.02 1.43 16 34 H 0.10 1.74 8.10 -2.39 -0.02 1.72 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 1.43 7.62 -2.39 -0.02 1.41 16 37 H 0.09 1.80 8.05 -2.39 -0.02 1.78 16 38 H 0.06 1.39 8.10 -2.38 -0.02 1.37 16 Total: -1.00 -72.03 300.72 0.15 -71.88 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: -0.32 Total: 24.98 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: 3.08 Total: -31.27 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -2.57 Total: -91.05 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -1.92 Total: -22.50 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.88 Total: 47.96 kcal Total: -72.03 0.15 -71.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717650409.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.123 kcal (2) G-P(sol) polarization free energy of solvation -72.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds