Wall clock time and date at job start Mon Mar 30 2020 03:50:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09005 * 109.46947 * 2 1
4 4 O 1.42900 * 109.47562 * 120.00050 * 2 1 3
5 5 C 1.53000 * 109.47093 * 240.00596 * 2 1 3
6 6 C 1.53514 * 114.16755 * 179.97438 * 5 2 1
7 7 N 1.47481 * 87.93320 * 139.85921 * 6 5 2
8 8 C 1.46899 * 111.00017 * 221.29629 * 7 6 5
9 9 C 1.52997 * 109.47254 * 169.99694 * 8 7 6
10 10 C 1.52992 * 109.47482 * 179.97438 * 9 8 7
11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 8
12 12 C 1.50701 * 109.47212 * 180.02562 * 11 10 9
13 13 H 1.07998 * 120.00129 * 359.97438 * 12 11 10
14 14 C 1.37880 * 119.99861 * 180.02562 * 12 11 10
15 15 N 1.31511 * 120.00346 * 359.97438 * 14 12 11
16 16 Si 1.86805 * 119.99914 * 179.97438 * 14 12 11
17 17 H 1.48499 * 109.46821 * 359.97438 * 16 14 12
18 18 H 1.48501 * 109.47152 * 119.99687 * 16 14 12
19 19 H 1.48494 * 109.47204 * 239.99634 * 16 14 12
20 20 C 1.47488 * 87.83366 * 332.98726 * 7 6 5
21 21 H 1.09000 * 109.46544 * 179.97438 * 1 2 3
22 22 H 1.08997 * 109.47056 * 299.99575 * 1 2 3
23 23 H 1.08991 * 109.47030 * 59.99823 * 1 2 3
24 24 H 0.96701 * 113.99557 * 60.00000 * 4 2 1
25 25 H 1.08994 * 113.26022 * 47.04310 * 5 2 1
26 26 H 1.09003 * 113.48278 * 25.09230 * 6 5 2
27 27 H 1.09003 * 113.52698 * 254.63125 * 6 5 2
28 28 H 1.09002 * 109.47043 * 289.99765 * 8 7 6
29 29 H 1.09001 * 109.47354 * 49.99826 * 8 7 6
30 30 H 1.09002 * 109.47153 * 300.00004 * 9 8 7
31 31 H 1.08998 * 109.47533 * 59.99633 * 9 8 7
32 32 H 1.09002 * 109.47103 * 300.00247 * 10 9 8
33 33 H 1.09001 * 109.47066 * 60.00169 * 10 9 8
34 34 H 1.09002 * 109.47153 * 300.00216 * 11 10 9
35 35 H 1.09001 * 109.47289 * 60.00300 * 11 10 9
36 36 H 0.96993 * 120.00442 * 180.02562 * 15 14 12
37 37 H 1.08997 * 113.47402 * 141.77817 * 20 7 6
38 38 H 1.09004 * 113.47408 * 272.24390 * 20 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 8 2.0065 -0.6736 1.1667
5 6 2.0400 -0.7211 -1.2493
6 6 3.5700 -0.7834 -1.3585
7 7 3.4252 -2.1656 -1.8520
8 6 4.4454 -3.0441 -1.2644
9 6 4.1171 -4.5009 -1.5973
10 6 5.1800 -5.4158 -0.9858
11 6 4.8514 -6.8726 -1.3182
12 6 5.8981 -7.7738 -0.7153
13 1 6.7161 -7.3499 -0.1519
14 6 5.8119 -9.1395 -0.8840
15 7 4.8161 -9.6558 -1.5705
16 14 7.1097 -10.2566 -0.1373
17 1 8.1166 -9.4345 0.5808
18 1 6.4656 -11.1955 0.8160
19 1 7.7789 -11.0276 -1.2157
20 6 2.1614 -2.2437 -1.0957
21 1 -0.3632 -1.0277 -0.0005
22 1 -0.3633 0.5138 0.8900
23 1 -0.3633 0.5138 -0.8899
24 1 1.7211 -1.5952 1.2328
25 1 1.5402 -0.4030 -2.1641
26 1 4.0772 -0.7170 -0.3959
27 1 3.9816 -0.0985 -2.0999
28 1 5.4233 -2.7894 -1.6732
29 1 4.4586 -2.9127 -0.1824
30 1 3.1393 -4.7555 -1.1884
31 1 4.1039 -4.6324 -2.6792
32 1 6.1577 -5.1610 -1.3950
33 1 5.1936 -5.2845 0.0961
34 1 3.8738 -7.1271 -0.9086
35 1 4.8376 -7.0043 -2.4001
36 1 4.7552 -10.6166 -1.6888
37 1 1.3782 -2.7963 -1.6148
38 1 2.2926 -2.5670 -0.0630
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000719862047.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:50:12
Heat of formation + Delta-G solvation = -42.058472 kcal
Electronic energy + Delta-G solvation = -15680.048699 eV
Core-core repulsion = 13136.655700 eV
Total energy + Delta-G solvation = -2543.392999 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-40.65877 -37.04915 -34.79277 -32.66756 -31.49191 -29.63447 -26.89826 -26.13649
-24.35794 -22.55202 -21.01811 -19.99607 -19.67731 -17.13644 -16.24259 -16.08280
-15.72615 -15.14923 -14.65083 -14.42741 -13.94786 -13.31492 -13.19725 -12.68888
-12.50117 -12.27650 -12.14576 -11.75378 -11.53391 -11.20932 -11.06783 -10.91159
-10.58169 -10.48271 -10.43865 -10.33376 -10.09297 -9.61473 -9.22714 -8.96569
-8.85873 -8.31689 -5.96533 -3.98672 3.32819 3.40049 3.44561 3.96205
4.09310 4.13383 4.48762 4.58969 4.82269 4.94988 5.05744 5.15363
5.24884 5.37003 5.39203 5.47053 5.49019 5.61228 5.64162 5.69888
5.86484 5.90975 6.01461 6.10995 6.24117 6.35644 6.60374 6.83125
6.98190 7.08136 7.24225 7.36562 7.72748 7.88259 8.04605 8.47629
9.09068 9.65208 11.14882
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.053004 B = 0.003963 C = 0.003925
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 528.134087 B = 7063.103650 C = 7132.440897
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C 0.110 3.890
3 H 0.101 0.899
4 O -0.563 6.563
5 C -0.153 4.153
6 C 0.003 3.997
7 N -0.470 5.470
8 C 0.020 3.980
9 C -0.111 4.111
10 C -0.109 4.109
11 C 0.021 3.979
12 C -0.519 4.519
13 H 0.055 0.945
14 C 0.055 3.945
15 N -0.896 5.896
16 Si 0.891 3.109
17 H -0.273 1.273
18 H -0.284 1.284
19 H -0.284 1.284
20 C 0.001 3.999
21 H 0.060 0.940
22 H 0.062 0.938
23 H 0.066 0.934
24 H 0.375 0.625
25 H 0.107 0.893
26 H 0.075 0.925
27 H 0.080 0.920
28 H 0.073 0.927
29 H 0.040 0.960
30 H 0.053 0.947
31 H 0.063 0.937
32 H 0.047 0.953
33 H 0.044 0.956
34 H 0.014 0.986
35 H 0.015 0.985
36 H 0.259 0.741
37 H 0.084 0.916
38 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.694 19.230 1.868 20.796
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.241 4.241
2 C 0.051 3.949
3 H 0.118 0.882
4 O -0.371 6.371
5 C -0.172 4.172
6 C -0.126 4.126
7 N -0.192 5.192
8 C -0.108 4.108
9 C -0.149 4.149
10 C -0.147 4.147
11 C -0.016 4.016
12 C -0.558 4.558
13 H 0.073 0.927
14 C -0.146 4.146
15 N -0.536 5.536
16 Si 0.719 3.281
17 H -0.198 1.198
18 H -0.210 1.210
19 H -0.210 1.210
20 C -0.128 4.128
21 H 0.079 0.921
22 H 0.081 0.919
23 H 0.085 0.915
24 H 0.224 0.776
25 H 0.125 0.875
26 H 0.093 0.907
27 H 0.098 0.902
28 H 0.092 0.908
29 H 0.058 0.942
30 H 0.072 0.928
31 H 0.082 0.918
32 H 0.065 0.935
33 H 0.063 0.937
34 H 0.032 0.968
35 H 0.034 0.966
36 H 0.069 0.931
37 H 0.102 0.898
38 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -7.431 19.458 1.198 20.863
hybrid contribution 0.481 -1.218 1.037 1.671
sum -6.950 18.240 2.235 19.647
Atomic orbital electron populations
1.22460 0.96227 1.02783 1.02614 1.21755 0.92892 0.96341 0.83925
0.88152 1.86596 1.77287 1.29438 1.43749 1.23556 0.97290 0.96587
0.99725 1.23816 0.95633 0.93008 1.00111 1.68957 1.03150 1.02412
1.44667 1.22787 0.96019 0.94832 0.97139 1.21577 0.99823 0.91937
1.01556 1.21602 0.96712 0.97539 0.98892 1.19095 0.96730 0.88942
0.96857 1.21332 1.09802 0.91462 1.33156 0.92710 1.25039 0.95763
0.98348 0.95415 1.69976 1.30899 1.11798 1.40913 0.86554 0.81811
0.80748 0.79001 1.19755 1.21031 1.21026 1.23802 0.95361 0.95447
0.98148 0.92092 0.91908 0.91508 0.77581 0.87495 0.90722 0.90156
0.90837 0.94170 0.92790 0.91811 0.93453 0.93676 0.96761 0.96626
0.93112 0.89761 0.91076
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.25 9.54 37.16 0.35 -0.90 16
2 C 0.11 0.91 3.70 -26.73 -0.10 0.81 16
3 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16
4 O -0.56 -5.66 12.56 -35.23 -0.44 -6.10 16
5 C -0.15 -1.40 3.92 -90.09 -0.35 -1.75 16
6 C 0.00 0.04 7.19 -7.54 -0.05 -0.02 16
7 N -0.47 -6.30 6.41 -244.60 -1.57 -7.86 16
8 C 0.02 0.31 4.82 -3.83 -0.02 0.29 16
9 C -0.11 -1.98 5.32 -26.74 -0.14 -2.12 16
10 C -0.11 -2.32 5.15 -26.74 -0.14 -2.46 16
11 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16
12 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16
13 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16
14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16
15 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16
16 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16
17 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16
18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16
19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16
20 C 0.00 0.02 6.32 -7.54 -0.05 -0.03 16
21 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16
22 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16
23 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
24 H 0.37 3.04 6.89 45.56 0.31 3.35 16
25 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16
26 H 0.07 0.86 7.43 -51.93 -0.39 0.47 16
27 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16
28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16
29 H 0.04 0.58 7.56 -51.93 -0.39 0.19 16
30 H 0.05 0.96 7.67 -51.93 -0.40 0.56 16
31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16
32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16
33 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16
34 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16
35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16
36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16
37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16
38 H 0.07 0.76 5.48 -51.93 -0.28 0.48 16
LS Contribution 305.55 15.07 4.60 4.60
Total: -1.00 -31.55 305.55 -8.92 -40.47
By element:
Atomic # 1 Polarization: 4.52 SS G_CDS: -6.18 Total: -1.67 kcal
Atomic # 6 Polarization: -18.63 SS G_CDS: -1.05 Total: -19.68 kcal
Atomic # 7 Polarization: -33.80 SS G_CDS: -0.83 Total: -34.63 kcal
Atomic # 8 Polarization: -5.66 SS G_CDS: -0.44 Total: -6.10 kcal
Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal
Total LS contribution 4.60 Total: 4.60 kcal
Total: -31.55 -8.92 -40.47 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000719862047.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.588 kcal
(2) G-P(sol) polarization free energy of solvation -31.547 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.135 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.058 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds