Wall clock time and date at job start Mon Mar 30 2020 03:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46947 * 2 1 4 4 O 1.42900 * 109.47562 * 120.00050 * 2 1 3 5 5 C 1.53000 * 109.47093 * 240.00596 * 2 1 3 6 6 C 1.53514 * 114.16755 * 179.97438 * 5 2 1 7 7 N 1.47481 * 87.93320 * 139.85921 * 6 5 2 8 8 C 1.46899 * 111.00017 * 221.29629 * 7 6 5 9 9 C 1.52997 * 109.47254 * 169.99694 * 8 7 6 10 10 C 1.52992 * 109.47482 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47212 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00129 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99861 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00346 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99914 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46821 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47152 * 119.99687 * 16 14 12 19 19 H 1.48494 * 109.47204 * 239.99634 * 16 14 12 20 20 C 1.47488 * 87.83366 * 332.98726 * 7 6 5 21 21 H 1.09000 * 109.46544 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47056 * 299.99575 * 1 2 3 23 23 H 1.08991 * 109.47030 * 59.99823 * 1 2 3 24 24 H 0.96701 * 113.99557 * 60.00000 * 4 2 1 25 25 H 1.08994 * 113.26022 * 47.04310 * 5 2 1 26 26 H 1.09003 * 113.48278 * 25.09230 * 6 5 2 27 27 H 1.09003 * 113.52698 * 254.63125 * 6 5 2 28 28 H 1.09002 * 109.47043 * 289.99765 * 8 7 6 29 29 H 1.09001 * 109.47354 * 49.99826 * 8 7 6 30 30 H 1.09002 * 109.47153 * 300.00004 * 9 8 7 31 31 H 1.08998 * 109.47533 * 59.99633 * 9 8 7 32 32 H 1.09002 * 109.47103 * 300.00247 * 10 9 8 33 33 H 1.09001 * 109.47066 * 60.00169 * 10 9 8 34 34 H 1.09002 * 109.47153 * 300.00216 * 11 10 9 35 35 H 1.09001 * 109.47289 * 60.00300 * 11 10 9 36 36 H 0.96993 * 120.00442 * 180.02562 * 15 14 12 37 37 H 1.08997 * 113.47402 * 141.77817 * 20 7 6 38 38 H 1.09004 * 113.47408 * 272.24390 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0065 -0.6736 1.1667 5 6 2.0400 -0.7211 -1.2493 6 6 3.5700 -0.7834 -1.3585 7 7 3.4252 -2.1656 -1.8520 8 6 4.4454 -3.0441 -1.2644 9 6 4.1171 -4.5009 -1.5973 10 6 5.1800 -5.4158 -0.9858 11 6 4.8514 -6.8726 -1.3182 12 6 5.8981 -7.7738 -0.7153 13 1 6.7161 -7.3499 -0.1519 14 6 5.8119 -9.1395 -0.8840 15 7 4.8161 -9.6558 -1.5705 16 14 7.1097 -10.2566 -0.1373 17 1 8.1166 -9.4345 0.5808 18 1 6.4656 -11.1955 0.8160 19 1 7.7789 -11.0276 -1.2157 20 6 2.1614 -2.2437 -1.0957 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.7211 -1.5952 1.2328 25 1 1.5402 -0.4030 -2.1641 26 1 4.0772 -0.7170 -0.3959 27 1 3.9816 -0.0985 -2.0999 28 1 5.4233 -2.7894 -1.6732 29 1 4.4586 -2.9127 -0.1824 30 1 3.1393 -4.7555 -1.1884 31 1 4.1039 -4.6324 -2.6792 32 1 6.1577 -5.1610 -1.3950 33 1 5.1936 -5.2845 0.0961 34 1 3.8738 -7.1271 -0.9086 35 1 4.8376 -7.0043 -2.4001 36 1 4.7552 -10.6166 -1.6888 37 1 1.3782 -2.7963 -1.6148 38 1 2.2926 -2.5670 -0.0630 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719862047.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:12 Heat of formation + Delta-G solvation = -42.058472 kcal Electronic energy + Delta-G solvation = -15680.048699 eV Core-core repulsion = 13136.655700 eV Total energy + Delta-G solvation = -2543.392999 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.65877 -37.04915 -34.79277 -32.66756 -31.49191 -29.63447 -26.89826 -26.13649 -24.35794 -22.55202 -21.01811 -19.99607 -19.67731 -17.13644 -16.24259 -16.08280 -15.72615 -15.14923 -14.65083 -14.42741 -13.94786 -13.31492 -13.19725 -12.68888 -12.50117 -12.27650 -12.14576 -11.75378 -11.53391 -11.20932 -11.06783 -10.91159 -10.58169 -10.48271 -10.43865 -10.33376 -10.09297 -9.61473 -9.22714 -8.96569 -8.85873 -8.31689 -5.96533 -3.98672 3.32819 3.40049 3.44561 3.96205 4.09310 4.13383 4.48762 4.58969 4.82269 4.94988 5.05744 5.15363 5.24884 5.37003 5.39203 5.47053 5.49019 5.61228 5.64162 5.69888 5.86484 5.90975 6.01461 6.10995 6.24117 6.35644 6.60374 6.83125 6.98190 7.08136 7.24225 7.36562 7.72748 7.88259 8.04605 8.47629 9.09068 9.65208 11.14882 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.053004 B = 0.003963 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.134087 B = 7063.103650 C = 7132.440897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.110 3.890 3 H 0.101 0.899 4 O -0.563 6.563 5 C -0.153 4.153 6 C 0.003 3.997 7 N -0.470 5.470 8 C 0.020 3.980 9 C -0.111 4.111 10 C -0.109 4.109 11 C 0.021 3.979 12 C -0.519 4.519 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.001 3.999 21 H 0.060 0.940 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.375 0.625 25 H 0.107 0.893 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.040 0.960 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.014 0.986 35 H 0.015 0.985 36 H 0.259 0.741 37 H 0.084 0.916 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.694 19.230 1.868 20.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.051 3.949 3 H 0.118 0.882 4 O -0.371 6.371 5 C -0.172 4.172 6 C -0.126 4.126 7 N -0.192 5.192 8 C -0.108 4.108 9 C -0.149 4.149 10 C -0.147 4.147 11 C -0.016 4.016 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.128 4.128 21 H 0.079 0.921 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.224 0.776 25 H 0.125 0.875 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.032 0.968 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.431 19.458 1.198 20.863 hybrid contribution 0.481 -1.218 1.037 1.671 sum -6.950 18.240 2.235 19.647 Atomic orbital electron populations 1.22460 0.96227 1.02783 1.02614 1.21755 0.92892 0.96341 0.83925 0.88152 1.86596 1.77287 1.29438 1.43749 1.23556 0.97290 0.96587 0.99725 1.23816 0.95633 0.93008 1.00111 1.68957 1.03150 1.02412 1.44667 1.22787 0.96019 0.94832 0.97139 1.21577 0.99823 0.91937 1.01556 1.21602 0.96712 0.97539 0.98892 1.19095 0.96730 0.88942 0.96857 1.21332 1.09802 0.91462 1.33156 0.92710 1.25039 0.95763 0.98348 0.95415 1.69976 1.30899 1.11798 1.40913 0.86554 0.81811 0.80748 0.79001 1.19755 1.21031 1.21026 1.23802 0.95361 0.95447 0.98148 0.92092 0.91908 0.91508 0.77581 0.87495 0.90722 0.90156 0.90837 0.94170 0.92790 0.91811 0.93453 0.93676 0.96761 0.96626 0.93112 0.89761 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 9.54 37.16 0.35 -0.90 16 2 C 0.11 0.91 3.70 -26.73 -0.10 0.81 16 3 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 4 O -0.56 -5.66 12.56 -35.23 -0.44 -6.10 16 5 C -0.15 -1.40 3.92 -90.09 -0.35 -1.75 16 6 C 0.00 0.04 7.19 -7.54 -0.05 -0.02 16 7 N -0.47 -6.30 6.41 -244.60 -1.57 -7.86 16 8 C 0.02 0.31 4.82 -3.83 -0.02 0.29 16 9 C -0.11 -1.98 5.32 -26.74 -0.14 -2.12 16 10 C -0.11 -2.32 5.15 -26.74 -0.14 -2.46 16 11 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 12 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 13 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16 16 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 C 0.00 0.02 6.32 -7.54 -0.05 -0.03 16 21 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 22 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.37 3.04 6.89 45.56 0.31 3.35 16 25 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.07 0.86 7.43 -51.93 -0.39 0.47 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.04 0.58 7.56 -51.93 -0.39 0.19 16 30 H 0.05 0.96 7.67 -51.93 -0.40 0.56 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.76 5.48 -51.93 -0.28 0.48 16 LS Contribution 305.55 15.07 4.60 4.60 Total: -1.00 -31.55 305.55 -8.92 -40.47 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -6.18 Total: -1.67 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -1.05 Total: -19.68 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: -0.83 Total: -34.63 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.44 Total: -6.10 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.55 -8.92 -40.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719862047.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.588 kcal (2) G-P(sol) polarization free energy of solvation -31.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds