Wall clock time and date at job start Mon Mar 30 2020 03:50:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09005 * 109.46947 * 2 1
4 4 O 1.42900 * 109.47562 * 120.00050 * 2 1 3
5 5 C 1.53000 * 109.47093 * 240.00596 * 2 1 3
6 6 C 1.53514 * 114.16755 * 179.97438 * 5 2 1
7 7 N 1.47481 * 87.93320 * 139.85921 * 6 5 2
8 8 C 1.46899 * 111.00017 * 221.29629 * 7 6 5
9 9 C 1.52997 * 109.47254 * 169.99694 * 8 7 6
10 10 C 1.52992 * 109.47482 * 179.97438 * 9 8 7
11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 8
12 12 C 1.50701 * 109.47212 * 180.02562 * 11 10 9
13 13 H 1.07998 * 120.00129 * 359.97438 * 12 11 10
14 14 C 1.37880 * 119.99861 * 180.02562 * 12 11 10
15 15 N 1.31511 * 120.00346 * 359.97438 * 14 12 11
16 16 Si 1.86805 * 119.99914 * 179.97438 * 14 12 11
17 17 H 1.48499 * 109.46821 * 359.97438 * 16 14 12
18 18 H 1.48501 * 109.47152 * 119.99687 * 16 14 12
19 19 H 1.48494 * 109.47204 * 239.99634 * 16 14 12
20 20 C 1.47488 * 87.83366 * 332.98726 * 7 6 5
21 21 H 1.09000 * 109.46544 * 179.97438 * 1 2 3
22 22 H 1.08997 * 109.47056 * 299.99575 * 1 2 3
23 23 H 1.08991 * 109.47030 * 59.99823 * 1 2 3
24 24 H 0.96701 * 113.99557 * 60.00000 * 4 2 1
25 25 H 1.08994 * 113.26022 * 47.04310 * 5 2 1
26 26 H 1.09003 * 113.48278 * 25.09230 * 6 5 2
27 27 H 1.09003 * 113.52698 * 254.63125 * 6 5 2
28 28 H 1.09002 * 109.47043 * 289.99765 * 8 7 6
29 29 H 1.09001 * 109.47354 * 49.99826 * 8 7 6
30 30 H 1.09002 * 109.47153 * 300.00004 * 9 8 7
31 31 H 1.08998 * 109.47533 * 59.99633 * 9 8 7
32 32 H 1.09002 * 109.47103 * 300.00247 * 10 9 8
33 33 H 1.09001 * 109.47066 * 60.00169 * 10 9 8
34 34 H 1.09002 * 109.47153 * 300.00216 * 11 10 9
35 35 H 1.09001 * 109.47289 * 60.00300 * 11 10 9
36 36 H 0.96993 * 120.00442 * 180.02562 * 15 14 12
37 37 H 1.08997 * 113.47402 * 141.77817 * 20 7 6
38 38 H 1.09004 * 113.47408 * 272.24390 * 20 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 8 2.0065 -0.6736 1.1667
5 6 2.0400 -0.7211 -1.2493
6 6 3.5700 -0.7834 -1.3585
7 7 3.4252 -2.1656 -1.8520
8 6 4.4454 -3.0441 -1.2644
9 6 4.1171 -4.5009 -1.5973
10 6 5.1800 -5.4158 -0.9858
11 6 4.8514 -6.8726 -1.3182
12 6 5.8981 -7.7738 -0.7153
13 1 6.7161 -7.3499 -0.1519
14 6 5.8119 -9.1395 -0.8840
15 7 4.8161 -9.6558 -1.5705
16 14 7.1097 -10.2566 -0.1373
17 1 8.1166 -9.4345 0.5808
18 1 6.4656 -11.1955 0.8160
19 1 7.7789 -11.0276 -1.2157
20 6 2.1614 -2.2437 -1.0957
21 1 -0.3632 -1.0277 -0.0005
22 1 -0.3633 0.5138 0.8900
23 1 -0.3633 0.5138 -0.8899
24 1 1.7211 -1.5952 1.2328
25 1 1.5402 -0.4030 -2.1641
26 1 4.0772 -0.7170 -0.3959
27 1 3.9816 -0.0985 -2.0999
28 1 5.4233 -2.7894 -1.6732
29 1 4.4586 -2.9127 -0.1824
30 1 3.1393 -4.7555 -1.1884
31 1 4.1039 -4.6324 -2.6792
32 1 6.1577 -5.1610 -1.3950
33 1 5.1936 -5.2845 0.0961
34 1 3.8738 -7.1271 -0.9086
35 1 4.8376 -7.0043 -2.4001
36 1 4.7552 -10.6166 -1.6888
37 1 1.3782 -2.7963 -1.6148
38 1 2.2926 -2.5670 -0.0630
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000719862047.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:50:03
Heat of formation + Delta-G solvation = -65.082778 kcal
Electronic energy + Delta-G solvation = -15681.047108 eV
Core-core repulsion = 13136.655700 eV
Total energy + Delta-G solvation = -2544.391408 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 1.38 seconds
Orbital eigenvalues (eV)
-41.54350 -37.89675 -36.49630 -34.56488 -32.50362 -31.00946 -28.36606 -27.01347
-25.91552 -23.74984 -22.27918 -21.72891 -20.50025 -18.46782 -17.93094 -16.96834
-16.71619 -16.53174 -15.98498 -15.87534 -15.07377 -14.51953 -14.27590 -14.13513
-13.76498 -13.57532 -13.18228 -13.05140 -12.84942 -12.74971 -12.44925 -12.27194
-12.19812 -11.89600 -11.75751 -11.43834 -11.33298 -11.23543 -11.03561 -10.75932
-10.57350 -9.85640 -8.21137 -6.32858 1.39047 1.39598 1.53233 2.40122
3.02397 3.11537 3.32724 3.46302 3.80113 3.93584 4.07863 4.17796
4.27425 4.40280 4.44675 4.51986 4.54871 4.59242 4.69664 4.77251
4.83856 4.89008 4.94013 5.06783 5.15225 5.24692 5.28438 5.31222
5.32858 5.41734 5.52928 5.74786 5.84854 6.09676 6.24247 6.73720
6.84562 7.36637 8.91029
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.053004 B = 0.003963 C = 0.003925
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 528.134087 B = 7063.103650 C = 7132.440897
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.112 3.888
3 H 0.108 0.892
4 O -0.580 6.580
5 C -0.133 4.133
6 C 0.003 3.997
7 N -0.490 5.490
8 C 0.031 3.969
9 C -0.100 4.100
10 C -0.097 4.097
11 C 0.023 3.977
12 C -0.545 4.545
13 H 0.060 0.940
14 C -0.003 4.003
15 N -0.934 5.934
16 Si 0.967 3.033
17 H -0.262 1.262
18 H -0.276 1.276
19 H -0.277 1.277
20 C -0.004 4.004
21 H 0.059 0.941
22 H 0.063 0.937
23 H 0.078 0.922
24 H 0.381 0.619
25 H 0.117 0.883
26 H 0.071 0.929
27 H 0.088 0.912
28 H 0.073 0.927
29 H 0.046 0.954
30 H 0.052 0.948
31 H 0.051 0.949
32 H 0.050 0.950
33 H 0.051 0.949
34 H -0.010 1.010
35 H -0.012 1.012
36 H 0.264 0.736
37 H 0.081 0.919
38 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.351 20.240 2.586 21.688
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.237 4.237
2 C 0.053 3.947
3 H 0.126 0.874
4 O -0.389 6.389
5 C -0.152 4.152
6 C -0.125 4.125
7 N -0.212 5.212
8 C -0.097 4.097
9 C -0.138 4.138
10 C -0.135 4.135
11 C -0.014 4.014
12 C -0.583 4.583
13 H 0.078 0.922
14 C -0.200 4.200
15 N -0.575 5.575
16 Si 0.792 3.208
17 H -0.186 1.186
18 H -0.202 1.202
19 H -0.203 1.203
20 C -0.133 4.133
21 H 0.078 0.922
22 H 0.082 0.918
23 H 0.097 0.903
24 H 0.231 0.769
25 H 0.135 0.865
26 H 0.089 0.911
27 H 0.107 0.893
28 H 0.091 0.909
29 H 0.064 0.936
30 H 0.070 0.930
31 H 0.069 0.931
32 H 0.068 0.932
33 H 0.070 0.930
34 H 0.008 0.992
35 H 0.006 0.994
36 H 0.073 0.927
37 H 0.099 0.901
38 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -7.092 20.486 1.917 21.764
hybrid contribution 0.331 -1.529 0.783 1.749
sum -6.761 18.957 2.700 20.307
Atomic orbital electron populations
1.22417 0.95028 1.02949 1.03276 1.21829 0.93788 0.96281 0.82816
0.87433 1.86574 1.77740 1.30093 1.44502 1.23481 0.96037 0.95011
1.00683 1.23853 0.97068 0.91574 1.00035 1.68941 1.03498 1.03426
1.45324 1.22577 0.96617 0.92989 0.97521 1.21387 0.98527 0.93521
1.00331 1.21409 0.97896 0.94708 0.99487 1.19020 0.95222 0.92417
0.94740 1.21765 1.10486 0.92452 1.33578 0.92208 1.26031 0.98141
1.00157 0.95706 1.70107 1.32869 1.12464 1.42035 0.85366 0.78830
0.78393 0.78258 1.18556 1.20187 1.20301 1.23887 0.94267 0.97107
0.98060 0.92192 0.91820 0.90287 0.76874 0.86467 0.91082 0.89332
0.90880 0.93603 0.92959 0.93060 0.93167 0.93034 0.99158 0.99354
0.92737 0.90061 0.90698
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.07 9.54 71.98 0.69 -1.38 16
2 C 0.11 1.61 3.70 30.60 0.11 1.73 16
3 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16
4 O -0.58 -10.73 12.56 -148.98 -1.87 -12.60 16
5 C -0.13 -2.17 3.92 -10.45 -0.04 -2.21 16
6 C 0.00 0.07 7.19 83.58 0.60 0.67 16
7 N -0.49 -12.53 6.41 -927.79 -5.95 -18.48 16
8 C 0.03 0.91 4.82 86.30 0.42 1.33 16
9 C -0.10 -3.56 5.32 30.59 0.16 -3.40 16
10 C -0.10 -4.13 5.15 30.59 0.16 -3.98 16
11 C 0.02 1.27 4.97 29.85 0.15 1.42 16
12 C -0.54 -32.04 9.11 25.60 0.23 -31.80 16
13 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16
14 C 0.00 -0.17 5.46 84.66 0.46 0.29 16
15 N -0.93 -58.19 13.29 21.45 0.28 -57.91 16
16 Si 0.97 45.07 29.54 68.60 2.03 47.09 16
17 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16
18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16
19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16
20 C 0.00 -0.09 6.32 83.58 0.53 0.44 16
21 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16
22 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16
23 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16
24 H 0.38 5.69 6.89 -74.06 -0.51 5.18 16
25 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16
26 H 0.07 1.51 7.43 -2.39 -0.02 1.49 16
27 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16
28 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16
29 H 0.05 1.27 7.56 -2.39 -0.02 1.25 16
30 H 0.05 1.86 7.67 -2.39 -0.02 1.84 16
31 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16
32 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16
33 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16
34 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16
35 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16
36 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16
37 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16
38 H 0.08 1.52 5.48 -2.38 -0.01 1.50 16
Total: -1.00 -67.20 305.55 -1.55 -68.75
By element:
Atomic # 1 Polarization: 9.56 SS G_CDS: 0.50 Total: 10.05 kcal
Atomic # 6 Polarization: -40.37 SS G_CDS: 3.47 Total: -36.90 kcal
Atomic # 7 Polarization: -70.72 SS G_CDS: -5.67 Total: -76.39 kcal
Atomic # 8 Polarization: -10.73 SS G_CDS: -1.87 Total: -12.60 kcal
Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal
Total: -67.20 -1.55 -68.75 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000719862047.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.663 kcal
(2) G-P(sol) polarization free energy of solvation -67.199 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.536 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.547 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.746 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.083 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.38 seconds