Wall clock time and date at job start Mon Mar 30 2020 03:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46947 * 2 1 4 4 O 1.42900 * 109.47562 * 120.00050 * 2 1 3 5 5 C 1.53000 * 109.47093 * 240.00596 * 2 1 3 6 6 C 1.53514 * 114.16755 * 179.97438 * 5 2 1 7 7 N 1.47481 * 87.93320 * 139.85921 * 6 5 2 8 8 C 1.46899 * 111.00017 * 221.29629 * 7 6 5 9 9 C 1.52997 * 109.47254 * 169.99694 * 8 7 6 10 10 C 1.52992 * 109.47482 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47212 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00129 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99861 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00346 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99914 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46821 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47152 * 119.99687 * 16 14 12 19 19 H 1.48494 * 109.47204 * 239.99634 * 16 14 12 20 20 C 1.47488 * 87.83366 * 332.98726 * 7 6 5 21 21 H 1.09000 * 109.46544 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47056 * 299.99575 * 1 2 3 23 23 H 1.08991 * 109.47030 * 59.99823 * 1 2 3 24 24 H 0.96701 * 113.99557 * 60.00000 * 4 2 1 25 25 H 1.08994 * 113.26022 * 47.04310 * 5 2 1 26 26 H 1.09003 * 113.48278 * 25.09230 * 6 5 2 27 27 H 1.09003 * 113.52698 * 254.63125 * 6 5 2 28 28 H 1.09002 * 109.47043 * 289.99765 * 8 7 6 29 29 H 1.09001 * 109.47354 * 49.99826 * 8 7 6 30 30 H 1.09002 * 109.47153 * 300.00004 * 9 8 7 31 31 H 1.08998 * 109.47533 * 59.99633 * 9 8 7 32 32 H 1.09002 * 109.47103 * 300.00247 * 10 9 8 33 33 H 1.09001 * 109.47066 * 60.00169 * 10 9 8 34 34 H 1.09002 * 109.47153 * 300.00216 * 11 10 9 35 35 H 1.09001 * 109.47289 * 60.00300 * 11 10 9 36 36 H 0.96993 * 120.00442 * 180.02562 * 15 14 12 37 37 H 1.08997 * 113.47402 * 141.77817 * 20 7 6 38 38 H 1.09004 * 113.47408 * 272.24390 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0065 -0.6736 1.1667 5 6 2.0400 -0.7211 -1.2493 6 6 3.5700 -0.7834 -1.3585 7 7 3.4252 -2.1656 -1.8520 8 6 4.4454 -3.0441 -1.2644 9 6 4.1171 -4.5009 -1.5973 10 6 5.1800 -5.4158 -0.9858 11 6 4.8514 -6.8726 -1.3182 12 6 5.8981 -7.7738 -0.7153 13 1 6.7161 -7.3499 -0.1519 14 6 5.8119 -9.1395 -0.8840 15 7 4.8161 -9.6558 -1.5705 16 14 7.1097 -10.2566 -0.1373 17 1 8.1166 -9.4345 0.5808 18 1 6.4656 -11.1955 0.8160 19 1 7.7789 -11.0276 -1.2157 20 6 2.1614 -2.2437 -1.0957 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.7211 -1.5952 1.2328 25 1 1.5402 -0.4030 -2.1641 26 1 4.0772 -0.7170 -0.3959 27 1 3.9816 -0.0985 -2.0999 28 1 5.4233 -2.7894 -1.6732 29 1 4.4586 -2.9127 -0.1824 30 1 3.1393 -4.7555 -1.1884 31 1 4.1039 -4.6324 -2.6792 32 1 6.1577 -5.1610 -1.3950 33 1 5.1936 -5.2845 0.0961 34 1 3.8738 -7.1271 -0.9086 35 1 4.8376 -7.0043 -2.4001 36 1 4.7552 -10.6166 -1.6888 37 1 1.3782 -2.7963 -1.6148 38 1 2.2926 -2.5670 -0.0630 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719862047.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:03 Heat of formation + Delta-G solvation = -65.082778 kcal Electronic energy + Delta-G solvation = -15681.047108 eV Core-core repulsion = 13136.655700 eV Total energy + Delta-G solvation = -2544.391408 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.54350 -37.89675 -36.49630 -34.56488 -32.50362 -31.00946 -28.36606 -27.01347 -25.91552 -23.74984 -22.27918 -21.72891 -20.50025 -18.46782 -17.93094 -16.96834 -16.71619 -16.53174 -15.98498 -15.87534 -15.07377 -14.51953 -14.27590 -14.13513 -13.76498 -13.57532 -13.18228 -13.05140 -12.84942 -12.74971 -12.44925 -12.27194 -12.19812 -11.89600 -11.75751 -11.43834 -11.33298 -11.23543 -11.03561 -10.75932 -10.57350 -9.85640 -8.21137 -6.32858 1.39047 1.39598 1.53233 2.40122 3.02397 3.11537 3.32724 3.46302 3.80113 3.93584 4.07863 4.17796 4.27425 4.40280 4.44675 4.51986 4.54871 4.59242 4.69664 4.77251 4.83856 4.89008 4.94013 5.06783 5.15225 5.24692 5.28438 5.31222 5.32858 5.41734 5.52928 5.74786 5.84854 6.09676 6.24247 6.73720 6.84562 7.36637 8.91029 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.053004 B = 0.003963 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.134087 B = 7063.103650 C = 7132.440897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.112 3.888 3 H 0.108 0.892 4 O -0.580 6.580 5 C -0.133 4.133 6 C 0.003 3.997 7 N -0.490 5.490 8 C 0.031 3.969 9 C -0.100 4.100 10 C -0.097 4.097 11 C 0.023 3.977 12 C -0.545 4.545 13 H 0.060 0.940 14 C -0.003 4.003 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.262 1.262 18 H -0.276 1.276 19 H -0.277 1.277 20 C -0.004 4.004 21 H 0.059 0.941 22 H 0.063 0.937 23 H 0.078 0.922 24 H 0.381 0.619 25 H 0.117 0.883 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.051 0.949 34 H -0.010 1.010 35 H -0.012 1.012 36 H 0.264 0.736 37 H 0.081 0.919 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.351 20.240 2.586 21.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.053 3.947 3 H 0.126 0.874 4 O -0.389 6.389 5 C -0.152 4.152 6 C -0.125 4.125 7 N -0.212 5.212 8 C -0.097 4.097 9 C -0.138 4.138 10 C -0.135 4.135 11 C -0.014 4.014 12 C -0.583 4.583 13 H 0.078 0.922 14 C -0.200 4.200 15 N -0.575 5.575 16 Si 0.792 3.208 17 H -0.186 1.186 18 H -0.202 1.202 19 H -0.203 1.203 20 C -0.133 4.133 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.097 0.903 24 H 0.231 0.769 25 H 0.135 0.865 26 H 0.089 0.911 27 H 0.107 0.893 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.008 0.992 35 H 0.006 0.994 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.092 20.486 1.917 21.764 hybrid contribution 0.331 -1.529 0.783 1.749 sum -6.761 18.957 2.700 20.307 Atomic orbital electron populations 1.22417 0.95028 1.02949 1.03276 1.21829 0.93788 0.96281 0.82816 0.87433 1.86574 1.77740 1.30093 1.44502 1.23481 0.96037 0.95011 1.00683 1.23853 0.97068 0.91574 1.00035 1.68941 1.03498 1.03426 1.45324 1.22577 0.96617 0.92989 0.97521 1.21387 0.98527 0.93521 1.00331 1.21409 0.97896 0.94708 0.99487 1.19020 0.95222 0.92417 0.94740 1.21765 1.10486 0.92452 1.33578 0.92208 1.26031 0.98141 1.00157 0.95706 1.70107 1.32869 1.12464 1.42035 0.85366 0.78830 0.78393 0.78258 1.18556 1.20187 1.20301 1.23887 0.94267 0.97107 0.98060 0.92192 0.91820 0.90287 0.76874 0.86467 0.91082 0.89332 0.90880 0.93603 0.92959 0.93060 0.93167 0.93034 0.99158 0.99354 0.92737 0.90061 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 9.54 71.98 0.69 -1.38 16 2 C 0.11 1.61 3.70 30.60 0.11 1.73 16 3 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 4 O -0.58 -10.73 12.56 -148.98 -1.87 -12.60 16 5 C -0.13 -2.17 3.92 -10.45 -0.04 -2.21 16 6 C 0.00 0.07 7.19 83.58 0.60 0.67 16 7 N -0.49 -12.53 6.41 -927.79 -5.95 -18.48 16 8 C 0.03 0.91 4.82 86.30 0.42 1.33 16 9 C -0.10 -3.56 5.32 30.59 0.16 -3.40 16 10 C -0.10 -4.13 5.15 30.59 0.16 -3.98 16 11 C 0.02 1.27 4.97 29.85 0.15 1.42 16 12 C -0.54 -32.04 9.11 25.60 0.23 -31.80 16 13 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 14 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 15 N -0.93 -58.19 13.29 21.45 0.28 -57.91 16 16 Si 0.97 45.07 29.54 68.60 2.03 47.09 16 17 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 C 0.00 -0.09 6.32 83.58 0.53 0.44 16 21 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 22 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.38 5.69 6.89 -74.06 -0.51 5.18 16 25 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.07 1.51 7.43 -2.39 -0.02 1.49 16 27 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.05 1.27 7.56 -2.39 -0.02 1.25 16 30 H 0.05 1.86 7.67 -2.39 -0.02 1.84 16 31 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 34 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 35 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 36 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16 38 H 0.08 1.52 5.48 -2.38 -0.01 1.50 16 Total: -1.00 -67.20 305.55 -1.55 -68.75 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 0.50 Total: 10.05 kcal Atomic # 6 Polarization: -40.37 SS G_CDS: 3.47 Total: -36.90 kcal Atomic # 7 Polarization: -70.72 SS G_CDS: -5.67 Total: -76.39 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -1.87 Total: -12.60 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -67.20 -1.55 -68.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719862047.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.663 kcal (2) G-P(sol) polarization free energy of solvation -67.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds