Wall clock time and date at job start Mon Mar 30 2020 03:22:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09000 * 108.69591 * 2 1
4 4 C 1.54574 * 108.73516 * 241.90065 * 2 1 3
5 5 C 1.54622 * 110.90566 * 198.31946 * 4 2 1
6 6 N 1.44003 * 112.48556 * 319.60666 * 5 4 2
7 7 C 1.46893 * 111.00199 * 217.17514 * 6 5 4
8 8 C 1.53000 * 109.47186 * 304.08132 * 7 6 5
9 9 C 1.53001 * 109.47355 * 179.97438 * 8 7 6
10 10 C 1.50694 * 109.47168 * 180.02562 * 9 8 7
11 11 H 1.08000 * 120.00563 * 0.02562 * 10 9 8
12 12 C 1.37885 * 119.99902 * 180.02562 * 10 9 8
13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 9
14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 9
15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10
16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10
17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10
18 18 C 1.47808 * 109.44639 * 94.30916 * 6 5 4
19 19 C 1.46257 * 112.31487 * 278.71304 * 18 6 5
20 20 O 1.39907 * 108.73276 * 118.21236 * 2 1 3
21 21 H 1.08995 * 109.46710 * 301.78410 * 1 2 3
22 22 H 1.08994 * 109.46814 * 61.78751 * 1 2 3
23 23 H 1.08997 * 109.46794 * 181.78465 * 1 2 3
24 24 H 1.09001 * 109.18908 * 318.68435 * 4 2 1
25 25 H 1.08996 * 109.19249 * 77.99940 * 4 2 1
26 26 H 1.08997 * 108.87699 * 198.83487 * 5 4 2
27 27 H 1.09001 * 108.87688 * 80.38854 * 5 4 2
28 28 H 1.09002 * 109.47091 * 184.08497 * 7 6 5
29 29 H 1.08992 * 109.47497 * 64.08389 * 7 6 5
30 30 H 1.09002 * 109.46807 * 60.00192 * 8 7 6
31 31 H 1.08998 * 109.47285 * 299.99794 * 8 7 6
32 32 H 1.09007 * 109.46922 * 59.99890 * 9 8 7
33 33 H 1.09003 * 109.46836 * 300.00646 * 9 8 7
34 34 H 0.97001 * 119.99646 * 179.97438 * 13 12 10
35 35 H 1.08993 * 108.91312 * 39.44481 * 18 6 5
36 36 H 1.09004 * 108.91259 * 158.07779 * 18 6 5
37 37 H 1.08997 * 109.11226 * 179.97438 * 19 18 6
38 38 H 1.09004 * 109.11575 * 299.08147 * 19 18 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8794 1.0325 0.0000
4 6 2.0265 -0.6895 -1.2913
5 6 3.5023 -1.1286 -1.1499
6 7 4.3056 -0.1481 -0.4666
7 6 5.6524 -0.0730 -1.0482
8 6 6.2976 -1.4601 -1.0213
9 6 7.7001 -1.3822 -1.6276
10 6 8.3353 -2.7485 -1.6016
11 1 7.7927 -3.5886 -1.1939
12 6 9.6092 -2.9261 -2.0985
13 7 10.2697 -1.9032 -2.5955
14 14 10.3967 -4.6196 -2.0656
15 1 11.7580 -4.5440 -2.6543
16 1 10.4896 -5.0952 -0.6620
17 1 9.5685 -5.5661 -2.8552
18 6 4.3677 -0.4791 0.9726
19 6 3.1817 -0.0256 1.6984
20 8 1.9793 -0.6264 1.1676
21 1 -0.3632 0.5413 0.8735
22 1 -0.3633 0.4858 -0.9055
23 1 -0.3633 -1.0272 0.0320
24 1 1.4093 -1.5658 -1.4896
25 1 1.9389 0.0065 -2.1255
26 1 3.9177 -1.2943 -2.1438
27 1 3.5398 -2.0652 -0.5935
28 1 6.2603 0.6217 -0.4685
29 1 5.5844 0.2761 -2.0784
30 1 5.6897 -2.1548 -1.6009
31 1 6.3657 -1.8092 0.0090
32 1 8.3083 -0.6873 -1.0483
33 1 7.6316 -1.0331 -2.6580
34 1 11.1660 -2.0281 -2.9447
35 1 4.4578 -1.5597 1.0830
36 1 5.2484 -0.0054 1.4064
37 1 3.2817 -0.2957 2.7497
38 1 3.1049 1.0585 1.6147
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000720456554.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:22:14
Heat of formation + Delta-G solvation = -77.103905 kcal
Electronic energy + Delta-G solvation = -16308.904021 eV
Core-core repulsion = 13763.991338 eV
Total energy + Delta-G solvation = -2544.912683 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.86185 -38.18918 -35.58487 -34.44714 -33.29959 -30.42209 -29.93303 -27.44398
-24.91020 -24.46562 -22.91387 -21.92616 -20.61608 -18.55720 -17.55580 -17.11159
-16.92914 -16.51455 -16.10495 -15.55694 -15.05723 -14.64485 -14.31280 -14.01661
-13.87550 -13.60362 -13.23115 -13.05284 -12.86196 -12.67507 -12.58904 -12.44562
-12.27846 -11.83136 -11.77790 -11.50764 -11.39138 -11.31745 -11.27101 -10.58886
-10.43106 -9.29893 -8.22754 -6.34940 1.36920 1.39653 1.47906 2.37886
2.92057 2.92398 3.09378 3.87712 4.00042 4.11371 4.13850 4.22864
4.25708 4.41865 4.45829 4.59319 4.62602 4.64462 4.83335 4.84594
4.86262 4.93819 4.96429 5.00717 5.10173 5.15673 5.17894 5.25013
5.37651 5.45718 5.66531 5.80570 6.04131 6.15502 6.22683 6.44336
6.81051 7.34398 8.88045
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.052659 B = 0.004863 C = 0.004846
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 531.595024 B = 5756.910167 C = 5777.079709
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.089 3.911
3 H 0.059 0.941
4 C -0.128 4.128
5 C 0.053 3.947
6 N -0.526 5.526
7 C 0.065 3.935
8 C -0.126 4.126
9 C 0.029 3.971
10 C -0.548 4.548
11 H 0.053 0.947
12 C 0.002 3.998
13 N -0.931 5.931
14 Si 0.963 3.037
15 H -0.280 1.280
16 H -0.267 1.267
17 H -0.268 1.268
18 C 0.016 3.984
19 C 0.068 3.932
20 O -0.390 6.390
21 H 0.062 0.938
22 H 0.081 0.919
23 H 0.056 0.944
24 H 0.071 0.929
25 H 0.079 0.921
26 H 0.057 0.943
27 H 0.027 0.973
28 H 0.075 0.925
29 H 0.071 0.929
30 H 0.044 0.956
31 H 0.045 0.955
32 H -0.006 1.006
33 H -0.007 1.007
34 H 0.265 0.735
35 H 0.032 0.968
36 H 0.085 0.915
37 H 0.111 0.889
38 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.290 4.681 6.136 18.934
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.030 3.970
3 H 0.077 0.923
4 C -0.167 4.167
5 C -0.076 4.076
6 N -0.248 5.248
7 C -0.063 4.063
8 C -0.165 4.165
9 C -0.009 4.009
10 C -0.586 4.586
11 H 0.072 0.928
12 C -0.196 4.196
13 N -0.571 5.571
14 Si 0.787 3.213
15 H -0.205 1.205
16 H -0.192 1.192
17 H -0.193 1.193
18 C -0.112 4.112
19 C -0.008 4.008
20 O -0.309 6.309
21 H 0.081 0.919
22 H 0.099 0.901
23 H 0.075 0.925
24 H 0.090 0.910
25 H 0.097 0.903
26 H 0.075 0.925
27 H 0.045 0.955
28 H 0.093 0.907
29 H 0.089 0.911
30 H 0.063 0.937
31 H 0.064 0.936
32 H 0.013 0.987
33 H 0.011 0.989
34 H 0.073 0.927
35 H 0.051 0.949
36 H 0.104 0.896
37 H 0.129 0.871
38 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -17.467 5.058 6.090 19.177
hybrid contribution 1.517 -1.467 -0.320 2.134
sum -15.950 3.591 5.770 17.338
Atomic orbital electron populations
1.21968 0.93119 1.02574 1.02907 1.21815 0.94763 0.95768 0.84620
0.92307 1.22694 0.93974 1.01417 0.98584 1.21899 0.94540 0.92928
0.98267 1.61894 1.12223 1.47959 1.02760 1.22274 0.87923 0.95944
1.00133 1.22046 0.97115 0.97710 0.99635 1.18920 0.92080 0.95452
0.94470 1.21645 1.00654 0.95895 1.40358 0.92848 1.25957 0.97886
1.01072 0.94667 1.70079 1.12849 1.32482 1.41682 0.85532 0.77513
0.79386 0.78824 1.20493 1.19242 1.19323 1.21821 1.00427 0.99712
0.89244 1.21773 0.83188 0.98054 0.97766 1.87698 1.42475 1.59631
1.41052 0.91916 0.90060 0.92458 0.90994 0.90272 0.92473 0.95480
0.90689 0.91072 0.93683 0.93630 0.98733 0.98894 0.92650 0.94930
0.89629 0.87147 0.91377
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.54 9.39 71.98 0.68 -1.86 16
2 C 0.09 1.96 2.71 31.13 0.08 2.04 16
3 H 0.06 1.30 7.24 -2.39 -0.02 1.29 16
4 C -0.13 -2.97 5.89 31.68 0.19 -2.78 16
5 C 0.05 1.54 4.10 87.40 0.36 1.90 16
6 N -0.53 -15.52 4.48 -910.63 -4.08 -19.60 16
7 C 0.07 2.24 5.08 86.30 0.44 2.68 16
8 C -0.13 -5.29 4.60 30.59 0.14 -5.15 16
9 C 0.03 1.52 4.97 29.85 0.15 1.67 16
10 C -0.55 -31.88 9.11 25.60 0.23 -31.64 16
11 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16
12 C 0.00 0.13 5.46 84.66 0.46 0.59 16
13 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16
14 Si 0.96 44.78 29.54 68.60 2.03 46.80 16
15 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16
16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16
17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16
18 C 0.02 0.42 4.27 84.05 0.36 0.78 16
19 C 0.07 1.51 6.38 69.91 0.45 1.96 16
20 O -0.39 -9.83 9.97 -139.86 -1.40 -11.23 16
21 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16
22 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16
23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16
24 H 0.07 1.55 7.99 -2.39 -0.02 1.53 16
25 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16
26 H 0.06 1.77 6.91 -2.39 -0.02 1.75 16
27 H 0.03 0.86 7.11 -2.39 -0.02 0.84 16
28 H 0.07 2.52 7.90 -2.39 -0.02 2.50 16
29 H 0.07 2.47 8.12 -2.39 -0.02 2.45 16
30 H 0.04 1.90 6.70 -2.39 -0.02 1.89 16
31 H 0.04 1.91 7.12 -2.39 -0.02 1.89 16
32 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16
33 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16
34 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16
35 H 0.03 0.98 6.87 -2.39 -0.02 0.96 16
36 H 0.09 2.20 7.69 -2.39 -0.02 2.18 16
37 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16
38 H 0.07 1.37 7.46 -2.39 -0.02 1.35 16
Total: -1.00 -64.49 294.71 1.37 -63.12
By element:
Atomic # 1 Polarization: 6.51 SS G_CDS: 1.00 Total: 7.51 kcal
Atomic # 6 Polarization: -33.35 SS G_CDS: 3.53 Total: -29.81 kcal
Atomic # 7 Polarization: -72.60 SS G_CDS: -3.79 Total: -76.40 kcal
Atomic # 8 Polarization: -9.83 SS G_CDS: -1.40 Total: -11.23 kcal
Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal
Total: -64.49 1.37 -63.12 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000720456554.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.981 kcal
(2) G-P(sol) polarization free energy of solvation -64.490 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.471 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.367 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.122 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.104 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds