Wall clock time and date at job start Mon Mar 30 2020 03:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 108.69591 * 2 1 4 4 C 1.54574 * 108.73516 * 241.90065 * 2 1 3 5 5 C 1.54622 * 110.90566 * 198.31946 * 4 2 1 6 6 N 1.44003 * 112.48556 * 319.60666 * 5 4 2 7 7 C 1.46893 * 111.00199 * 217.17514 * 6 5 4 8 8 C 1.53000 * 109.47186 * 304.08132 * 7 6 5 9 9 C 1.53001 * 109.47355 * 179.97438 * 8 7 6 10 10 C 1.50694 * 109.47168 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00563 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10 17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10 18 18 C 1.47808 * 109.44639 * 94.30916 * 6 5 4 19 19 C 1.46257 * 112.31487 * 278.71304 * 18 6 5 20 20 O 1.39907 * 108.73276 * 118.21236 * 2 1 3 21 21 H 1.08995 * 109.46710 * 301.78410 * 1 2 3 22 22 H 1.08994 * 109.46814 * 61.78751 * 1 2 3 23 23 H 1.08997 * 109.46794 * 181.78465 * 1 2 3 24 24 H 1.09001 * 109.18908 * 318.68435 * 4 2 1 25 25 H 1.08996 * 109.19249 * 77.99940 * 4 2 1 26 26 H 1.08997 * 108.87699 * 198.83487 * 5 4 2 27 27 H 1.09001 * 108.87688 * 80.38854 * 5 4 2 28 28 H 1.09002 * 109.47091 * 184.08497 * 7 6 5 29 29 H 1.08992 * 109.47497 * 64.08389 * 7 6 5 30 30 H 1.09002 * 109.46807 * 60.00192 * 8 7 6 31 31 H 1.08998 * 109.47285 * 299.99794 * 8 7 6 32 32 H 1.09007 * 109.46922 * 59.99890 * 9 8 7 33 33 H 1.09003 * 109.46836 * 300.00646 * 9 8 7 34 34 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 35 35 H 1.08993 * 108.91312 * 39.44481 * 18 6 5 36 36 H 1.09004 * 108.91259 * 158.07779 * 18 6 5 37 37 H 1.08997 * 109.11226 * 179.97438 * 19 18 6 38 38 H 1.09004 * 109.11575 * 299.08147 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8794 1.0325 0.0000 4 6 2.0265 -0.6895 -1.2913 5 6 3.5023 -1.1286 -1.1499 6 7 4.3056 -0.1481 -0.4666 7 6 5.6524 -0.0730 -1.0482 8 6 6.2976 -1.4601 -1.0213 9 6 7.7001 -1.3822 -1.6276 10 6 8.3353 -2.7485 -1.6016 11 1 7.7927 -3.5886 -1.1939 12 6 9.6092 -2.9261 -2.0985 13 7 10.2697 -1.9032 -2.5955 14 14 10.3967 -4.6196 -2.0656 15 1 11.7580 -4.5440 -2.6543 16 1 10.4896 -5.0952 -0.6620 17 1 9.5685 -5.5661 -2.8552 18 6 4.3677 -0.4791 0.9726 19 6 3.1817 -0.0256 1.6984 20 8 1.9793 -0.6264 1.1676 21 1 -0.3632 0.5413 0.8735 22 1 -0.3633 0.4858 -0.9055 23 1 -0.3633 -1.0272 0.0320 24 1 1.4093 -1.5658 -1.4896 25 1 1.9389 0.0065 -2.1255 26 1 3.9177 -1.2943 -2.1438 27 1 3.5398 -2.0652 -0.5935 28 1 6.2603 0.6217 -0.4685 29 1 5.5844 0.2761 -2.0784 30 1 5.6897 -2.1548 -1.6009 31 1 6.3657 -1.8092 0.0090 32 1 8.3083 -0.6873 -1.0483 33 1 7.6316 -1.0331 -2.6580 34 1 11.1660 -2.0281 -2.9447 35 1 4.4578 -1.5597 1.0830 36 1 5.2484 -0.0054 1.4064 37 1 3.2817 -0.2957 2.7497 38 1 3.1049 1.0585 1.6147 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720456554.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:14 Heat of formation + Delta-G solvation = -77.103905 kcal Electronic energy + Delta-G solvation = -16308.904021 eV Core-core repulsion = 13763.991338 eV Total energy + Delta-G solvation = -2544.912683 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.86185 -38.18918 -35.58487 -34.44714 -33.29959 -30.42209 -29.93303 -27.44398 -24.91020 -24.46562 -22.91387 -21.92616 -20.61608 -18.55720 -17.55580 -17.11159 -16.92914 -16.51455 -16.10495 -15.55694 -15.05723 -14.64485 -14.31280 -14.01661 -13.87550 -13.60362 -13.23115 -13.05284 -12.86196 -12.67507 -12.58904 -12.44562 -12.27846 -11.83136 -11.77790 -11.50764 -11.39138 -11.31745 -11.27101 -10.58886 -10.43106 -9.29893 -8.22754 -6.34940 1.36920 1.39653 1.47906 2.37886 2.92057 2.92398 3.09378 3.87712 4.00042 4.11371 4.13850 4.22864 4.25708 4.41865 4.45829 4.59319 4.62602 4.64462 4.83335 4.84594 4.86262 4.93819 4.96429 5.00717 5.10173 5.15673 5.17894 5.25013 5.37651 5.45718 5.66531 5.80570 6.04131 6.15502 6.22683 6.44336 6.81051 7.34398 8.88045 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.052659 B = 0.004863 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.595024 B = 5756.910167 C = 5777.079709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.089 3.911 3 H 0.059 0.941 4 C -0.128 4.128 5 C 0.053 3.947 6 N -0.526 5.526 7 C 0.065 3.935 8 C -0.126 4.126 9 C 0.029 3.971 10 C -0.548 4.548 11 H 0.053 0.947 12 C 0.002 3.998 13 N -0.931 5.931 14 Si 0.963 3.037 15 H -0.280 1.280 16 H -0.267 1.267 17 H -0.268 1.268 18 C 0.016 3.984 19 C 0.068 3.932 20 O -0.390 6.390 21 H 0.062 0.938 22 H 0.081 0.919 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.027 0.973 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.045 0.955 32 H -0.006 1.006 33 H -0.007 1.007 34 H 0.265 0.735 35 H 0.032 0.968 36 H 0.085 0.915 37 H 0.111 0.889 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.290 4.681 6.136 18.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.030 3.970 3 H 0.077 0.923 4 C -0.167 4.167 5 C -0.076 4.076 6 N -0.248 5.248 7 C -0.063 4.063 8 C -0.165 4.165 9 C -0.009 4.009 10 C -0.586 4.586 11 H 0.072 0.928 12 C -0.196 4.196 13 N -0.571 5.571 14 Si 0.787 3.213 15 H -0.205 1.205 16 H -0.192 1.192 17 H -0.193 1.193 18 C -0.112 4.112 19 C -0.008 4.008 20 O -0.309 6.309 21 H 0.081 0.919 22 H 0.099 0.901 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.013 0.987 33 H 0.011 0.989 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.104 0.896 37 H 0.129 0.871 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.467 5.058 6.090 19.177 hybrid contribution 1.517 -1.467 -0.320 2.134 sum -15.950 3.591 5.770 17.338 Atomic orbital electron populations 1.21968 0.93119 1.02574 1.02907 1.21815 0.94763 0.95768 0.84620 0.92307 1.22694 0.93974 1.01417 0.98584 1.21899 0.94540 0.92928 0.98267 1.61894 1.12223 1.47959 1.02760 1.22274 0.87923 0.95944 1.00133 1.22046 0.97115 0.97710 0.99635 1.18920 0.92080 0.95452 0.94470 1.21645 1.00654 0.95895 1.40358 0.92848 1.25957 0.97886 1.01072 0.94667 1.70079 1.12849 1.32482 1.41682 0.85532 0.77513 0.79386 0.78824 1.20493 1.19242 1.19323 1.21821 1.00427 0.99712 0.89244 1.21773 0.83188 0.98054 0.97766 1.87698 1.42475 1.59631 1.41052 0.91916 0.90060 0.92458 0.90994 0.90272 0.92473 0.95480 0.90689 0.91072 0.93683 0.93630 0.98733 0.98894 0.92650 0.94930 0.89629 0.87147 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.39 71.98 0.68 -1.86 16 2 C 0.09 1.96 2.71 31.13 0.08 2.04 16 3 H 0.06 1.30 7.24 -2.39 -0.02 1.29 16 4 C -0.13 -2.97 5.89 31.68 0.19 -2.78 16 5 C 0.05 1.54 4.10 87.40 0.36 1.90 16 6 N -0.53 -15.52 4.48 -910.63 -4.08 -19.60 16 7 C 0.07 2.24 5.08 86.30 0.44 2.68 16 8 C -0.13 -5.29 4.60 30.59 0.14 -5.15 16 9 C 0.03 1.52 4.97 29.85 0.15 1.67 16 10 C -0.55 -31.88 9.11 25.60 0.23 -31.64 16 11 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 12 C 0.00 0.13 5.46 84.66 0.46 0.59 16 13 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 14 Si 0.96 44.78 29.54 68.60 2.03 46.80 16 15 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 C 0.02 0.42 4.27 84.05 0.36 0.78 16 19 C 0.07 1.51 6.38 69.91 0.45 1.96 16 20 O -0.39 -9.83 9.97 -139.86 -1.40 -11.23 16 21 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.07 1.55 7.99 -2.39 -0.02 1.53 16 25 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.06 1.77 6.91 -2.39 -0.02 1.75 16 27 H 0.03 0.86 7.11 -2.39 -0.02 0.84 16 28 H 0.07 2.52 7.90 -2.39 -0.02 2.50 16 29 H 0.07 2.47 8.12 -2.39 -0.02 2.45 16 30 H 0.04 1.90 6.70 -2.39 -0.02 1.89 16 31 H 0.04 1.91 7.12 -2.39 -0.02 1.89 16 32 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 33 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 34 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 35 H 0.03 0.98 6.87 -2.39 -0.02 0.96 16 36 H 0.09 2.20 7.69 -2.39 -0.02 2.18 16 37 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.07 1.37 7.46 -2.39 -0.02 1.35 16 Total: -1.00 -64.49 294.71 1.37 -63.12 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 1.00 Total: 7.51 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 3.53 Total: -29.81 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -3.79 Total: -76.40 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -1.40 Total: -11.23 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -64.49 1.37 -63.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720456554.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.981 kcal (2) G-P(sol) polarization free energy of solvation -64.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds