Wall clock time and date at job start Mon Mar 30 2020 03:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47030 * 2 1 4 4 C 1.53005 * 109.46849 * 239.99687 * 2 1 3 5 5 C 1.50702 * 109.46622 * 175.31855 * 4 2 1 6 6 H 1.08001 * 119.99843 * 4.83506 * 5 4 2 7 7 C 1.37881 * 119.99753 * 184.82879 * 5 4 2 8 8 N 1.31507 * 120.00020 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99717 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47234 * 90.00098 * 9 7 5 11 11 H 1.48502 * 109.46768 * 210.00037 * 9 7 5 12 12 H 1.48504 * 109.47212 * 329.99693 * 9 7 5 13 13 N 1.46903 * 109.46794 * 120.00339 * 2 1 3 14 14 C 1.44799 * 110.99727 * 293.81863 * 13 2 1 15 15 C 1.54438 * 109.05991 * 219.86437 * 14 13 2 16 16 O 1.36477 * 111.41459 * 284.07869 * 15 14 13 17 17 C 1.43658 * 117.38818 * 61.36329 * 16 15 14 18 18 H 1.08999 * 109.77474 * 38.82798 * 17 16 15 19 19 C 1.53002 * 109.77373 * 159.56263 * 17 16 15 20 20 C 1.51036 * 107.92455 * 279.22277 * 17 16 15 21 21 C 1.48056 * 111.00155 * 61.92910 * 13 2 1 22 22 H 1.09006 * 109.46789 * 60.00207 * 1 2 3 23 23 H 1.09000 * 109.47334 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47276 * 300.00067 * 1 2 3 25 25 H 1.08995 * 109.47180 * 295.32155 * 4 2 1 26 26 H 1.08999 * 109.47067 * 55.32714 * 4 2 1 27 27 H 0.97001 * 120.00306 * 179.97438 * 8 7 5 28 28 H 1.09005 * 109.53927 * 339.73662 * 14 13 2 29 29 H 1.09003 * 109.54255 * 99.98647 * 14 13 2 30 30 H 1.08991 * 109.09474 * 44.58244 * 15 14 13 31 31 H 1.09000 * 109.09065 * 163.65450 * 15 14 13 32 32 H 1.09002 * 109.46606 * 59.99867 * 19 17 16 33 33 H 1.08995 * 109.47459 * 179.97438 * 19 17 16 34 34 H 1.08994 * 109.47136 * 300.00531 * 19 17 16 35 35 H 1.09003 * 109.03026 * 212.53058 * 20 17 16 36 36 H 1.08999 * 109.02844 * 331.36696 * 20 17 16 37 37 H 1.08997 * 108.94776 * 312.48370 * 21 13 2 38 38 H 1.08997 * 108.94744 * 71.10310 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2493 5 6 3.5425 -0.6217 -1.3086 6 1 4.0859 -0.1651 -0.4945 7 6 4.2234 -1.1135 -2.4020 8 7 3.5616 -1.6700 -3.3929 9 14 6.0859 -0.9906 -2.4752 10 1 6.6864 -2.2050 -1.8672 11 1 6.5194 -0.8800 -3.8912 12 1 6.5326 0.2110 -1.7255 13 7 2.0196 -0.6926 1.1994 14 6 1.6778 0.0428 2.3990 15 6 2.8673 -0.0154 3.3824 16 8 2.9481 -1.2322 3.9951 17 6 3.1581 -2.3809 3.1583 18 1 3.8553 -2.1319 2.3584 19 6 3.7189 -3.5339 3.9932 20 6 1.8249 -2.7767 2.5691 21 6 1.5832 -2.1073 1.2105 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.7467 -1.7703 -1.2083 26 1 1.6099 -0.2582 -2.1373 27 1 4.0406 -2.0157 -4.1624 28 1 1.4673 1.0811 2.1426 29 1 0.7989 -0.4048 2.8631 30 1 3.7915 0.1704 2.8354 31 1 2.7407 0.7569 4.1411 32 1 3.0122 -3.7876 4.7833 33 1 3.8759 -4.4026 3.3539 34 1 4.6677 -3.2330 4.4373 35 1 1.7999 -3.8589 2.4416 36 1 1.0314 -2.4828 3.2562 37 1 0.5191 -2.1513 0.9788 38 1 2.1334 -2.6534 0.4442 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720470191.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:25 Heat of formation + Delta-G solvation = -67.580233 kcal Electronic energy + Delta-G solvation = -17110.270930 eV Core-core repulsion = 14565.771224 eV Total energy + Delta-G solvation = -2544.499706 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.92895 -38.41399 -35.03189 -34.68910 -32.73891 -30.06966 -29.20490 -28.08114 -25.31864 -24.97158 -22.55410 -22.00979 -19.98952 -18.37075 -17.48309 -17.22890 -17.04552 -16.38388 -16.00885 -15.56691 -14.70457 -14.50669 -14.21363 -13.88085 -13.63680 -13.52265 -13.24224 -13.16346 -13.05929 -12.63489 -12.41781 -12.38407 -12.15789 -12.10081 -11.72446 -11.58662 -11.31278 -11.08759 -10.96543 -10.49146 -10.33421 -8.81151 -8.10879 -6.15777 1.40847 1.41087 1.52210 2.46103 2.89646 3.05779 3.24922 3.89389 4.01693 4.10881 4.24728 4.29605 4.35619 4.45725 4.53561 4.56152 4.59851 4.67524 4.83979 4.87430 4.92645 4.94857 5.05328 5.10374 5.15464 5.20446 5.29477 5.33940 5.36974 5.48923 5.71541 5.89497 6.31775 6.45763 6.60654 6.75618 6.98542 7.50390 9.00998 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023128 B = 0.009460 C = 0.007925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.351864 B = 2959.123366 C = 3532.236764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.099 3.901 3 H 0.065 0.935 4 C 0.035 3.965 5 C -0.498 4.498 6 H 0.057 0.943 7 C -0.004 4.004 8 N -0.939 5.939 9 Si 0.954 3.046 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.267 1.267 13 N -0.546 5.546 14 C 0.024 3.976 15 C 0.081 3.919 16 O -0.392 6.392 17 C 0.093 3.907 18 H 0.047 0.953 19 C -0.138 4.138 20 C -0.136 4.136 21 C 0.065 3.935 22 H 0.056 0.944 23 H 0.049 0.951 24 H 0.065 0.935 25 H -0.005 1.005 26 H -0.008 1.008 27 H 0.258 0.742 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.025 0.975 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.035 0.965 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.533 -0.135 14.080 14.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.009 4.009 3 H 0.083 0.917 4 C -0.002 4.002 5 C -0.537 4.537 6 H 0.075 0.925 7 C -0.200 4.200 8 N -0.581 5.581 9 Si 0.780 3.220 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.192 1.192 13 N -0.271 5.271 14 C -0.104 4.104 15 C 0.002 3.998 16 O -0.311 6.311 17 C 0.037 3.963 18 H 0.065 0.935 19 C -0.195 4.195 20 C -0.174 4.174 21 C -0.062 4.062 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.014 0.986 26 H 0.010 0.990 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.131 0.869 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.038 -0.243 14.100 14.426 hybrid contribution 0.019 0.054 -1.125 1.127 sum -3.019 -0.189 12.975 13.323 Atomic orbital electron populations 1.22395 0.97382 1.01469 1.01944 1.21666 0.91873 0.97024 0.90312 0.91722 1.19069 0.95274 0.94298 0.91574 1.21465 0.93165 1.36410 1.02642 0.92514 1.25834 1.02699 0.95742 0.95696 1.70087 1.37003 1.42043 1.08977 0.85613 0.80852 0.78629 0.76918 1.20292 1.21203 1.19178 1.60643 1.62851 1.01693 1.01902 1.22762 0.97790 0.98632 0.91235 1.21826 0.96411 0.85852 0.95666 1.86362 1.92403 1.15021 1.37275 1.21913 0.95848 0.86140 0.92421 0.93485 1.21798 1.01361 0.95982 1.00392 1.22002 0.98488 1.01418 0.95510 1.22248 0.97739 0.88733 0.97527 0.92502 0.93175 0.91620 0.98640 0.98959 0.93282 0.90269 0.93441 0.95681 0.86936 0.91013 0.90175 0.91980 0.89161 0.90865 0.94729 0.93279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.81 8.71 71.98 0.63 -5.19 16 2 C 0.10 4.04 2.10 44.92 0.09 4.13 16 3 H 0.06 2.68 7.90 -2.39 -0.02 2.66 16 4 C 0.04 1.82 4.18 29.85 0.12 1.95 16 5 C -0.50 -28.28 8.83 25.60 0.23 -28.05 16 6 H 0.06 3.21 7.73 -2.91 -0.02 3.19 16 7 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 8 N -0.94 -57.59 13.29 21.45 0.28 -57.30 16 9 Si 0.95 45.54 29.54 68.60 2.03 47.57 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 13 N -0.55 -20.38 3.59 -869.58 -3.12 -23.50 16 14 C 0.02 0.73 4.44 87.19 0.39 1.12 16 15 C 0.08 2.33 6.53 72.47 0.47 2.81 16 16 O -0.39 -11.77 9.70 -99.05 -0.96 -12.73 16 17 C 0.09 2.78 2.89 29.95 0.09 2.86 16 18 H 0.05 1.71 7.61 -2.39 -0.02 1.69 16 19 C -0.14 -3.18 9.37 71.98 0.67 -2.50 16 20 C -0.14 -3.91 4.94 30.08 0.15 -3.76 16 21 C 0.06 2.31 4.55 86.20 0.39 2.71 16 22 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 23 H 0.05 1.70 6.20 -2.39 -0.01 1.68 16 24 H 0.06 1.86 7.28 -2.39 -0.02 1.84 16 25 H 0.00 -0.26 6.37 -2.39 -0.02 -0.27 16 26 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 27 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 28 H 0.08 2.20 7.32 -2.38 -0.02 2.19 16 29 H 0.05 1.35 7.01 -2.39 -0.02 1.33 16 30 H 0.02 0.83 8.13 -2.39 -0.02 0.81 16 31 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 33 H 0.08 1.66 8.13 -2.39 -0.02 1.64 16 34 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 2.26 7.76 -2.39 -0.02 2.24 16 36 H 0.07 1.97 7.29 -2.39 -0.02 1.95 16 37 H 0.03 1.20 5.80 -2.39 -0.01 1.18 16 38 H 0.05 2.11 6.82 -2.39 -0.02 2.10 16 Total: -1.00 -63.86 289.80 2.93 -60.93 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 1.01 Total: 8.70 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: 3.70 Total: -23.66 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -2.84 Total: -80.81 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.96 Total: -12.73 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -63.86 2.93 -60.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720470191.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.648 kcal (2) G-P(sol) polarization free energy of solvation -63.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds