Wall clock time and date at job start Mon Mar 30 2020 03:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.36669 * 2 1 4 4 C 1.54373 * 110.32322 * 237.81321 * 2 1 3 5 5 N 1.48559 * 104.59710 * 217.25462 * 4 2 1 6 6 C 1.48563 * 104.22085 * 39.48488 * 5 4 2 7 7 C 1.54263 * 110.32004 * 122.17911 * 2 1 3 8 8 H 1.09002 * 110.32388 * 237.79037 * 7 2 1 9 9 C 1.53001 * 110.41021 * 359.95511 * 7 2 1 10 10 O 1.42901 * 109.47021 * 183.51528 * 9 7 2 11 11 C 1.42902 * 114.00184 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47153 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.47138 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47341 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99693 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00153 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99696 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00022 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47492 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47495 * 119.99875 * 18 16 14 21 21 H 1.48502 * 109.47214 * 239.99953 * 18 16 14 22 22 H 1.09001 * 109.47351 * 297.82342 * 1 2 3 23 23 H 1.09012 * 109.47170 * 57.82067 * 1 2 3 24 24 H 1.08997 * 109.47740 * 177.82030 * 1 2 3 25 25 H 1.09000 * 110.41279 * 98.47547 * 4 2 1 26 26 H 1.08996 * 110.41571 * 336.03316 * 4 2 1 27 27 H 1.00906 * 111.00078 * 279.93076 * 5 4 2 28 28 H 1.09006 * 110.40976 * 201.74203 * 6 5 4 29 29 H 1.08990 * 110.41077 * 79.29791 * 6 5 4 30 30 H 1.09002 * 109.47236 * 303.51728 * 9 7 2 31 31 H 1.08999 * 109.46779 * 63.51776 * 9 7 2 32 32 H 1.08999 * 109.46870 * 299.99978 * 11 10 9 33 33 H 1.08995 * 109.47019 * 59.99800 * 11 10 9 34 34 H 1.08999 * 109.47162 * 299.99735 * 12 11 10 35 35 H 1.09005 * 109.47429 * 59.99941 * 12 11 10 36 36 H 1.08997 * 109.47469 * 300.00625 * 13 12 11 37 37 H 1.09005 * 109.46634 * 59.99912 * 13 12 11 38 38 H 0.96998 * 119.99988 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0218 0.0000 4 6 2.0662 -0.7711 -1.2252 5 7 3.2692 -1.4830 -0.7224 6 6 2.8805 -1.9423 0.6360 7 6 2.0657 -0.7704 1.2244 8 1 2.7081 -0.1267 1.8254 9 6 0.9063 -1.3012 2.0700 10 8 1.4228 -1.9395 3.2395 11 6 0.4169 -2.4738 4.1025 12 6 1.0808 -3.1290 5.3151 13 6 0.0037 -3.7006 6.2394 14 6 0.6575 -4.3466 7.4336 15 1 1.7338 -4.3496 7.5241 16 6 -0.1180 -4.9346 8.4101 17 7 -1.4285 -4.9322 8.2992 18 14 0.6925 -5.7347 9.8907 19 1 2.1674 -5.6040 9.7785 20 1 0.2287 -5.0639 11.1317 21 1 0.3257 -7.1730 9.9388 22 1 -0.3634 0.4797 0.9089 23 1 -0.3634 0.5474 -0.8699 24 1 -0.3634 -1.0269 -0.0391 25 1 2.3394 -0.0781 -2.0208 26 1 1.3229 -1.4849 -1.5802 27 1 4.0648 -0.8637 -0.6807 28 1 3.7669 -2.1309 1.2417 29 1 2.2647 -2.8392 0.5721 30 1 0.2613 -0.4728 2.3630 31 1 0.3313 -2.0208 1.4872 32 1 -0.2386 -1.6700 4.4377 33 1 -0.1679 -3.2178 3.5617 34 1 1.7365 -3.9328 4.9803 35 1 1.6653 -2.3846 5.8558 36 1 -0.6518 -2.8966 6.5742 37 1 -0.5812 -4.4449 5.6989 38 1 -1.9742 -5.3456 8.9863 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722475164.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:59 Heat of formation + Delta-G solvation = -69.891903 kcal Electronic energy + Delta-G solvation = -15644.544942 eV Core-core repulsion = 13099.944995 eV Total energy + Delta-G solvation = -2544.599947 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.61773 -37.27702 -33.90591 -32.63263 -31.58666 -30.04819 -26.69532 -25.65918 -24.66981 -22.84993 -22.06379 -20.25040 -18.96656 -17.28827 -16.39888 -15.93115 -15.72662 -14.80889 -14.72621 -14.42157 -14.24297 -13.34233 -13.13398 -12.91736 -12.40524 -12.23124 -12.06469 -11.69427 -11.51188 -11.44101 -10.95680 -10.91184 -10.77353 -10.58736 -10.48057 -10.30591 -9.80745 -9.43261 -9.18024 -9.08189 -8.88621 -8.35353 -6.00423 -4.02502 3.31981 3.39215 3.44140 3.85470 4.07821 4.44424 4.47225 4.60981 4.76573 5.01565 5.20388 5.27297 5.27612 5.31712 5.35708 5.48246 5.49842 5.66406 5.74210 5.75818 5.84326 5.89934 5.95053 5.99723 6.15218 6.21731 6.46595 6.69979 6.73658 7.10455 7.12111 7.59349 7.67681 7.79328 7.99389 8.42498 9.04439 9.61616 11.11231 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.061462 B = 0.003897 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.455796 B = 7184.181945 C = 7482.455386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 H 0.075 0.925 4 C 0.043 3.957 5 N -0.673 5.673 6 C 0.050 3.950 7 C -0.119 4.119 8 H 0.080 0.920 9 C 0.071 3.929 10 O -0.393 6.393 11 C 0.064 3.936 12 C -0.107 4.107 13 C 0.023 3.977 14 C -0.518 4.518 15 H 0.057 0.943 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.335 0.665 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.806 10.076 -17.497 20.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 H 0.093 0.907 4 C -0.087 4.087 5 N -0.298 5.298 6 C -0.079 4.079 7 C -0.139 4.139 8 H 0.099 0.901 9 C -0.006 4.006 10 O -0.312 6.312 11 C -0.012 4.012 12 C -0.145 4.145 13 C -0.015 4.015 14 C -0.557 4.557 15 H 0.075 0.925 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.099 0.901 27 H 0.150 0.850 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.783 9.333 -17.756 20.622 hybrid contribution -0.078 0.492 1.420 1.505 sum 4.704 9.825 -16.336 19.635 Atomic orbital electron populations 1.21910 0.94417 1.02359 1.01936 1.22494 0.96991 0.99611 0.95119 0.90652 1.23133 0.93163 0.96272 0.96109 1.63305 1.05796 1.39084 1.21618 1.23046 0.99583 0.97355 0.87958 1.22517 0.97571 0.97993 0.95829 0.90109 1.22561 0.95103 0.95926 0.87009 1.87872 1.34329 1.75436 1.33588 1.22762 0.90560 0.96357 0.91542 1.21646 1.00217 0.99095 0.93539 1.19058 0.93233 0.95820 0.93339 1.21265 0.93224 1.35860 1.05323 0.92466 1.25032 0.94838 0.96285 0.98398 1.69976 1.03880 1.45103 1.34649 0.86507 0.79670 0.79054 0.82618 1.19672 1.21007 1.20994 0.92105 0.92581 0.92002 0.90997 0.90146 0.85016 0.90374 0.89973 0.93476 0.93401 0.93994 0.93910 0.92586 0.92662 0.96510 0.96477 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 7.94 37.16 0.29 -0.95 16 2 C -0.12 -1.07 3.65 -89.24 -0.33 -1.40 16 3 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.04 0.37 7.01 -2.19 -0.02 0.35 16 5 N -0.67 -6.67 7.62 -109.66 -0.84 -7.51 16 6 C 0.05 0.57 6.88 -2.18 -0.01 0.55 16 7 C -0.12 -1.31 3.33 -89.23 -0.30 -1.61 16 8 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 9 C 0.07 0.93 4.07 37.16 0.15 1.08 16 10 O -0.39 -6.69 10.20 -35.23 -0.36 -7.05 16 11 C 0.06 1.18 5.94 37.15 0.22 1.40 16 12 C -0.11 -2.34 5.52 -26.73 -0.15 -2.49 16 13 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 14 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 15 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 18 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H 0.06 0.53 6.71 -51.93 -0.35 0.18 16 23 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 24 H 0.06 0.54 6.86 -51.93 -0.36 0.19 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.72 7.83 -51.93 -0.41 0.31 16 27 H 0.33 2.81 8.92 -39.29 -0.35 2.46 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 1.03 7.78 -51.93 -0.40 0.63 16 30 H 0.05 0.59 6.59 -51.93 -0.34 0.25 16 31 H 0.05 0.61 6.89 -51.93 -0.36 0.25 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 303.04 15.07 4.57 4.57 Total: -1.00 -30.56 303.04 -8.35 -38.91 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -6.76 Total: -2.96 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -0.68 Total: -16.39 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: -0.10 Total: -33.96 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.36 Total: -7.05 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.56 -8.35 -38.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722475164.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.981 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds