Wall clock time and date at job start Mon Mar 30 2020 03:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.36669 * 2 1 4 4 C 1.54373 * 110.32322 * 237.81321 * 2 1 3 5 5 N 1.48559 * 104.59710 * 217.25462 * 4 2 1 6 6 C 1.48563 * 104.22085 * 39.48488 * 5 4 2 7 7 C 1.54263 * 110.32004 * 122.17911 * 2 1 3 8 8 H 1.09002 * 110.32388 * 237.79037 * 7 2 1 9 9 C 1.53001 * 110.41021 * 359.95511 * 7 2 1 10 10 O 1.42901 * 109.47021 * 183.51528 * 9 7 2 11 11 C 1.42902 * 114.00184 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47153 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.47138 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47341 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99693 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00153 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99696 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00022 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47492 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47495 * 119.99875 * 18 16 14 21 21 H 1.48502 * 109.47214 * 239.99953 * 18 16 14 22 22 H 1.09001 * 109.47351 * 297.82342 * 1 2 3 23 23 H 1.09012 * 109.47170 * 57.82067 * 1 2 3 24 24 H 1.08997 * 109.47740 * 177.82030 * 1 2 3 25 25 H 1.09000 * 110.41279 * 98.47547 * 4 2 1 26 26 H 1.08996 * 110.41571 * 336.03316 * 4 2 1 27 27 H 1.00906 * 111.00078 * 279.93076 * 5 4 2 28 28 H 1.09006 * 110.40976 * 201.74203 * 6 5 4 29 29 H 1.08990 * 110.41077 * 79.29791 * 6 5 4 30 30 H 1.09002 * 109.47236 * 303.51728 * 9 7 2 31 31 H 1.08999 * 109.46779 * 63.51776 * 9 7 2 32 32 H 1.08999 * 109.46870 * 299.99978 * 11 10 9 33 33 H 1.08995 * 109.47019 * 59.99800 * 11 10 9 34 34 H 1.08999 * 109.47162 * 299.99735 * 12 11 10 35 35 H 1.09005 * 109.47429 * 59.99941 * 12 11 10 36 36 H 1.08997 * 109.47469 * 300.00625 * 13 12 11 37 37 H 1.09005 * 109.46634 * 59.99912 * 13 12 11 38 38 H 0.96998 * 119.99988 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0218 0.0000 4 6 2.0662 -0.7711 -1.2252 5 7 3.2692 -1.4830 -0.7224 6 6 2.8805 -1.9423 0.6360 7 6 2.0657 -0.7704 1.2244 8 1 2.7081 -0.1267 1.8254 9 6 0.9063 -1.3012 2.0700 10 8 1.4228 -1.9395 3.2395 11 6 0.4169 -2.4738 4.1025 12 6 1.0808 -3.1290 5.3151 13 6 0.0037 -3.7006 6.2394 14 6 0.6575 -4.3466 7.4336 15 1 1.7338 -4.3496 7.5241 16 6 -0.1180 -4.9346 8.4101 17 7 -1.4285 -4.9322 8.2992 18 14 0.6925 -5.7347 9.8907 19 1 2.1674 -5.6040 9.7785 20 1 0.2287 -5.0639 11.1317 21 1 0.3257 -7.1730 9.9388 22 1 -0.3634 0.4797 0.9089 23 1 -0.3634 0.5474 -0.8699 24 1 -0.3634 -1.0269 -0.0391 25 1 2.3394 -0.0781 -2.0208 26 1 1.3229 -1.4849 -1.5802 27 1 4.0648 -0.8637 -0.6807 28 1 3.7669 -2.1309 1.2417 29 1 2.2647 -2.8392 0.5721 30 1 0.2613 -0.4728 2.3630 31 1 0.3313 -2.0208 1.4872 32 1 -0.2386 -1.6700 4.4377 33 1 -0.1679 -3.2178 3.5617 34 1 1.7365 -3.9328 4.9803 35 1 1.6653 -2.3846 5.8558 36 1 -0.6518 -2.8966 6.5742 37 1 -0.5812 -4.4449 5.6989 38 1 -1.9742 -5.3456 8.9863 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722475164.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:59 Heat of formation + Delta-G solvation = -90.271687 kcal Electronic energy + Delta-G solvation = -15645.428676 eV Core-core repulsion = 13099.944995 eV Total energy + Delta-G solvation = -2545.483681 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.49770 -38.55781 -35.88210 -33.78964 -33.17002 -31.08119 -28.54880 -26.40351 -25.79238 -24.68729 -22.87199 -22.08133 -19.84074 -18.63193 -18.09904 -17.21045 -16.98124 -16.42867 -15.84243 -15.78367 -15.23360 -14.65803 -14.39988 -14.11826 -13.91884 -13.43085 -13.18497 -13.14136 -12.83927 -12.73976 -12.52076 -12.25690 -12.05003 -11.84366 -11.69424 -11.57990 -11.45660 -11.31476 -11.17385 -10.57874 -10.49409 -9.66752 -8.22413 -6.33488 1.40321 1.40533 1.54438 2.39365 2.68712 3.11052 3.29077 3.65715 3.80711 3.91192 4.14442 4.16685 4.27549 4.35938 4.47086 4.50189 4.55385 4.59006 4.62564 4.70683 4.88323 4.90276 4.93796 5.00310 5.05900 5.14051 5.18531 5.26097 5.37435 5.48140 5.68090 5.68581 5.81196 6.17822 6.32427 6.43255 6.82344 7.35840 8.89935 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.061462 B = 0.003897 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.455796 B = 7184.181945 C = 7482.455386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 H 0.089 0.911 4 C 0.044 3.956 5 N -0.679 5.679 6 C 0.051 3.949 7 C -0.116 4.116 8 H 0.077 0.923 9 C 0.067 3.933 10 O -0.406 6.406 11 C 0.075 3.925 12 C -0.096 4.096 13 C 0.027 3.973 14 C -0.545 4.545 15 H 0.059 0.941 16 C 0.000 4.000 17 N -0.932 5.932 18 Si 0.968 3.032 19 H -0.263 1.263 20 H -0.276 1.276 21 H -0.276 1.276 22 H 0.056 0.944 23 H 0.072 0.928 24 H 0.054 0.946 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.345 0.655 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.053 0.947 36 H -0.003 1.003 37 H -0.003 1.003 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.564 10.701 -18.059 21.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 H 0.107 0.893 4 C -0.085 4.085 5 N -0.305 5.305 6 C -0.079 4.079 7 C -0.137 4.137 8 H 0.095 0.905 9 C -0.010 4.010 10 O -0.326 6.326 11 C -0.002 4.002 12 C -0.134 4.134 13 C -0.011 4.011 14 C -0.583 4.583 15 H 0.077 0.923 16 C -0.198 4.198 17 N -0.573 5.573 18 Si 0.792 3.208 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.202 1.202 22 H 0.075 0.925 23 H 0.091 0.909 24 H 0.073 0.927 25 H 0.111 0.889 26 H 0.094 0.906 27 H 0.161 0.839 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.015 0.985 37 H 0.015 0.985 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.551 9.972 -18.340 21.601 hybrid contribution -0.326 0.324 1.528 1.596 sum 5.226 10.296 -16.812 20.395 Atomic orbital electron populations 1.21909 0.94037 1.02152 1.02544 1.22469 0.97242 0.99881 0.93811 0.89305 1.23178 0.92498 0.96399 0.96451 1.63266 1.06768 1.39961 1.20547 1.22938 0.99090 0.97012 0.88845 1.22523 0.96779 0.98010 0.96360 0.90490 1.22806 0.96257 0.96065 0.85844 1.87830 1.34239 1.75814 1.34714 1.22447 0.90377 0.96556 0.90771 1.21391 0.98753 0.99018 0.94232 1.18938 0.93868 0.94644 0.93606 1.21683 0.93582 1.36512 1.06528 0.92273 1.25986 0.95424 0.96719 1.01659 1.70093 1.05410 1.45830 1.35925 0.85356 0.78937 0.78063 0.78441 1.18716 1.20170 1.20197 0.92497 0.90915 0.92715 0.88927 0.90624 0.83939 0.91064 0.91511 0.92589 0.92947 0.93440 0.93491 0.92811 0.92813 0.98455 0.98486 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 7.94 71.98 0.57 -1.61 16 2 C -0.11 -1.75 3.65 -9.90 -0.04 -1.79 16 3 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 4 C 0.04 0.66 7.01 86.45 0.61 1.27 16 5 N -0.68 -12.44 7.62 -500.87 -3.82 -16.26 16 6 C 0.05 1.12 6.88 86.45 0.59 1.72 16 7 C -0.12 -2.43 3.33 -9.90 -0.03 -2.46 16 8 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 9 C 0.07 1.68 4.07 71.98 0.29 1.98 16 10 O -0.41 -13.59 10.20 -148.98 -1.52 -15.11 16 11 C 0.07 2.74 5.94 71.98 0.43 3.17 16 12 C -0.10 -4.24 5.52 30.59 0.17 -4.07 16 13 C 0.03 1.44 4.97 29.85 0.15 1.59 16 14 C -0.55 -31.81 9.11 25.60 0.23 -31.58 16 15 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 16 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 17 N -0.93 -57.07 13.29 21.45 0.28 -56.79 16 18 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 19 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 22 H 0.06 0.88 6.71 -2.39 -0.02 0.87 16 23 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 24 H 0.05 0.88 6.86 -2.39 -0.02 0.86 16 25 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.08 1.22 7.83 -2.39 -0.02 1.20 16 27 H 0.34 5.17 8.92 -89.69 -0.80 4.37 16 28 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.07 1.66 7.78 -2.39 -0.02 1.65 16 30 H 0.06 1.32 6.59 -2.39 -0.02 1.31 16 31 H 0.05 1.28 6.89 -2.39 -0.02 1.27 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 37 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 38 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -64.64 303.04 0.62 -64.02 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 0.21 Total: 8.69 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 3.44 Total: -31.34 kcal Atomic # 7 Polarization: -69.52 SS G_CDS: -3.53 Total: -73.05 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -1.52 Total: -15.11 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -64.64 0.62 -64.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722475164.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.250 kcal (2) G-P(sol) polarization free energy of solvation -64.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds