Wall clock time and date at job start Mon Mar 30 2020 03:31:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08995 * 110.36669 * 2 1
4 4 C 1.54373 * 110.32322 * 237.81321 * 2 1 3
5 5 N 1.48559 * 104.59710 * 217.25462 * 4 2 1
6 6 C 1.48563 * 104.22085 * 39.48488 * 5 4 2
7 7 C 1.54263 * 110.32004 * 122.17911 * 2 1 3
8 8 H 1.09002 * 110.32388 * 237.79037 * 7 2 1
9 9 C 1.53001 * 110.41021 * 359.95511 * 7 2 1
10 10 O 1.42901 * 109.47021 * 183.51528 * 9 7 2
11 11 C 1.42902 * 114.00184 * 180.02562 * 10 9 7
12 12 C 1.52994 * 109.47153 * 180.02562 * 11 10 9
13 13 C 1.53005 * 109.47138 * 179.97438 * 12 11 10
14 14 C 1.50698 * 109.47341 * 179.97438 * 13 12 11
15 15 H 1.08003 * 119.99693 * 359.97438 * 14 13 12
16 16 C 1.37875 * 120.00153 * 180.02562 * 14 13 12
17 17 N 1.31514 * 119.99696 * 0.02562 * 16 14 13
18 18 Si 1.86793 * 120.00022 * 180.02562 * 16 14 13
19 19 H 1.48499 * 109.47492 * 359.97438 * 18 16 14
20 20 H 1.48499 * 109.47495 * 119.99875 * 18 16 14
21 21 H 1.48502 * 109.47214 * 239.99953 * 18 16 14
22 22 H 1.09001 * 109.47351 * 297.82342 * 1 2 3
23 23 H 1.09012 * 109.47170 * 57.82067 * 1 2 3
24 24 H 1.08997 * 109.47740 * 177.82030 * 1 2 3
25 25 H 1.09000 * 110.41279 * 98.47547 * 4 2 1
26 26 H 1.08996 * 110.41571 * 336.03316 * 4 2 1
27 27 H 1.00906 * 111.00078 * 279.93076 * 5 4 2
28 28 H 1.09006 * 110.40976 * 201.74203 * 6 5 4
29 29 H 1.08990 * 110.41077 * 79.29791 * 6 5 4
30 30 H 1.09002 * 109.47236 * 303.51728 * 9 7 2
31 31 H 1.08999 * 109.46779 * 63.51776 * 9 7 2
32 32 H 1.08999 * 109.46870 * 299.99978 * 11 10 9
33 33 H 1.08995 * 109.47019 * 59.99800 * 11 10 9
34 34 H 1.08999 * 109.47162 * 299.99735 * 12 11 10
35 35 H 1.09005 * 109.47429 * 59.99941 * 12 11 10
36 36 H 1.08997 * 109.47469 * 300.00625 * 13 12 11
37 37 H 1.09005 * 109.46634 * 59.99912 * 13 12 11
38 38 H 0.96998 * 119.99988 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9093 1.0218 0.0000
4 6 2.0662 -0.7711 -1.2252
5 7 3.2692 -1.4830 -0.7224
6 6 2.8805 -1.9423 0.6360
7 6 2.0657 -0.7704 1.2244
8 1 2.7081 -0.1267 1.8254
9 6 0.9063 -1.3012 2.0700
10 8 1.4228 -1.9395 3.2395
11 6 0.4169 -2.4738 4.1025
12 6 1.0808 -3.1290 5.3151
13 6 0.0037 -3.7006 6.2394
14 6 0.6575 -4.3466 7.4336
15 1 1.7338 -4.3496 7.5241
16 6 -0.1180 -4.9346 8.4101
17 7 -1.4285 -4.9322 8.2992
18 14 0.6925 -5.7347 9.8907
19 1 2.1674 -5.6040 9.7785
20 1 0.2287 -5.0639 11.1317
21 1 0.3257 -7.1730 9.9388
22 1 -0.3634 0.4797 0.9089
23 1 -0.3634 0.5474 -0.8699
24 1 -0.3634 -1.0269 -0.0391
25 1 2.3394 -0.0781 -2.0208
26 1 1.3229 -1.4849 -1.5802
27 1 4.0648 -0.8637 -0.6807
28 1 3.7669 -2.1309 1.2417
29 1 2.2647 -2.8392 0.5721
30 1 0.2613 -0.4728 2.3630
31 1 0.3313 -2.0208 1.4872
32 1 -0.2386 -1.6700 4.4377
33 1 -0.1679 -3.2178 3.5617
34 1 1.7365 -3.9328 4.9803
35 1 1.6653 -2.3846 5.8558
36 1 -0.6518 -2.8966 6.5742
37 1 -0.5812 -4.4449 5.6989
38 1 -1.9742 -5.3456 8.9863
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000722475164.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:31:59
Heat of formation + Delta-G solvation = -90.271687 kcal
Electronic energy + Delta-G solvation = -15645.428676 eV
Core-core repulsion = 13099.944995 eV
Total energy + Delta-G solvation = -2545.483681 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.49770 -38.55781 -35.88210 -33.78964 -33.17002 -31.08119 -28.54880 -26.40351
-25.79238 -24.68729 -22.87199 -22.08133 -19.84074 -18.63193 -18.09904 -17.21045
-16.98124 -16.42867 -15.84243 -15.78367 -15.23360 -14.65803 -14.39988 -14.11826
-13.91884 -13.43085 -13.18497 -13.14136 -12.83927 -12.73976 -12.52076 -12.25690
-12.05003 -11.84366 -11.69424 -11.57990 -11.45660 -11.31476 -11.17385 -10.57874
-10.49409 -9.66752 -8.22413 -6.33488 1.40321 1.40533 1.54438 2.39365
2.68712 3.11052 3.29077 3.65715 3.80711 3.91192 4.14442 4.16685
4.27549 4.35938 4.47086 4.50189 4.55385 4.59006 4.62564 4.70683
4.88323 4.90276 4.93796 5.00310 5.05900 5.14051 5.18531 5.26097
5.37435 5.48140 5.68090 5.68581 5.81196 6.17822 6.32427 6.43255
6.82344 7.35840 8.89935
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.061462 B = 0.003897 C = 0.003741
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 455.455796 B = 7184.181945 C = 7482.455386
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.114 4.114
3 H 0.089 0.911
4 C 0.044 3.956
5 N -0.679 5.679
6 C 0.051 3.949
7 C -0.116 4.116
8 H 0.077 0.923
9 C 0.067 3.933
10 O -0.406 6.406
11 C 0.075 3.925
12 C -0.096 4.096
13 C 0.027 3.973
14 C -0.545 4.545
15 H 0.059 0.941
16 C 0.000 4.000
17 N -0.932 5.932
18 Si 0.968 3.032
19 H -0.263 1.263
20 H -0.276 1.276
21 H -0.276 1.276
22 H 0.056 0.944
23 H 0.072 0.928
24 H 0.054 0.946
25 H 0.092 0.908
26 H 0.075 0.925
27 H 0.345 0.655
28 H 0.071 0.929
29 H 0.066 0.934
30 H 0.056 0.944
31 H 0.052 0.948
32 H 0.047 0.953
33 H 0.047 0.953
34 H 0.053 0.947
35 H 0.053 0.947
36 H -0.003 1.003
37 H -0.003 1.003
38 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.564 10.701 -18.059 21.716
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.134 4.134
3 H 0.107 0.893
4 C -0.085 4.085
5 N -0.305 5.305
6 C -0.079 4.079
7 C -0.137 4.137
8 H 0.095 0.905
9 C -0.010 4.010
10 O -0.326 6.326
11 C -0.002 4.002
12 C -0.134 4.134
13 C -0.011 4.011
14 C -0.583 4.583
15 H 0.077 0.923
16 C -0.198 4.198
17 N -0.573 5.573
18 Si 0.792 3.208
19 H -0.187 1.187
20 H -0.202 1.202
21 H -0.202 1.202
22 H 0.075 0.925
23 H 0.091 0.909
24 H 0.073 0.927
25 H 0.111 0.889
26 H 0.094 0.906
27 H 0.161 0.839
28 H 0.089 0.911
29 H 0.085 0.915
30 H 0.074 0.926
31 H 0.071 0.929
32 H 0.066 0.934
33 H 0.065 0.935
34 H 0.072 0.928
35 H 0.072 0.928
36 H 0.015 0.985
37 H 0.015 0.985
38 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 5.551 9.972 -18.340 21.601
hybrid contribution -0.326 0.324 1.528 1.596
sum 5.226 10.296 -16.812 20.395
Atomic orbital electron populations
1.21909 0.94037 1.02152 1.02544 1.22469 0.97242 0.99881 0.93811
0.89305 1.23178 0.92498 0.96399 0.96451 1.63266 1.06768 1.39961
1.20547 1.22938 0.99090 0.97012 0.88845 1.22523 0.96779 0.98010
0.96360 0.90490 1.22806 0.96257 0.96065 0.85844 1.87830 1.34239
1.75814 1.34714 1.22447 0.90377 0.96556 0.90771 1.21391 0.98753
0.99018 0.94232 1.18938 0.93868 0.94644 0.93606 1.21683 0.93582
1.36512 1.06528 0.92273 1.25986 0.95424 0.96719 1.01659 1.70093
1.05410 1.45830 1.35925 0.85356 0.78937 0.78063 0.78441 1.18716
1.20170 1.20197 0.92497 0.90915 0.92715 0.88927 0.90624 0.83939
0.91064 0.91511 0.92589 0.92947 0.93440 0.93491 0.92811 0.92813
0.98455 0.98486 0.92639
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.19 7.94 71.98 0.57 -1.61 16
2 C -0.11 -1.75 3.65 -9.90 -0.04 -1.79 16
3 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16
4 C 0.04 0.66 7.01 86.45 0.61 1.27 16
5 N -0.68 -12.44 7.62 -500.87 -3.82 -16.26 16
6 C 0.05 1.12 6.88 86.45 0.59 1.72 16
7 C -0.12 -2.43 3.33 -9.90 -0.03 -2.46 16
8 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16
9 C 0.07 1.68 4.07 71.98 0.29 1.98 16
10 O -0.41 -13.59 10.20 -148.98 -1.52 -15.11 16
11 C 0.07 2.74 5.94 71.98 0.43 3.17 16
12 C -0.10 -4.24 5.52 30.59 0.17 -4.07 16
13 C 0.03 1.44 4.97 29.85 0.15 1.59 16
14 C -0.55 -31.81 9.11 25.60 0.23 -31.58 16
15 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16
16 C 0.00 -0.01 5.46 84.65 0.46 0.46 16
17 N -0.93 -57.07 13.29 21.45 0.28 -56.79 16
18 Si 0.97 44.76 29.54 68.60 2.03 46.79 16
19 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16
20 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16
21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16
22 H 0.06 0.88 6.71 -2.39 -0.02 0.87 16
23 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16
24 H 0.05 0.88 6.86 -2.39 -0.02 0.86 16
25 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16
26 H 0.08 1.22 7.83 -2.39 -0.02 1.20 16
27 H 0.34 5.17 8.92 -89.69 -0.80 4.37 16
28 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16
29 H 0.07 1.66 7.78 -2.39 -0.02 1.65 16
30 H 0.06 1.32 6.59 -2.39 -0.02 1.31 16
31 H 0.05 1.28 6.89 -2.39 -0.02 1.27 16
32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16
33 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16
34 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16
35 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16
36 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16
37 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16
38 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16
Total: -1.00 -64.64 303.04 0.62 -64.02
By element:
Atomic # 1 Polarization: 8.48 SS G_CDS: 0.21 Total: 8.69 kcal
Atomic # 6 Polarization: -34.77 SS G_CDS: 3.44 Total: -31.34 kcal
Atomic # 7 Polarization: -69.52 SS G_CDS: -3.53 Total: -73.05 kcal
Atomic # 8 Polarization: -13.59 SS G_CDS: -1.52 Total: -15.11 kcal
Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal
Total: -64.64 0.62 -64.02 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000722475164.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.250 kcal
(2) G-P(sol) polarization free energy of solvation -64.642 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.892 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.022 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.272 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds