Wall clock time and date at job start Mon Mar 30 2020 04:13:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09001 * 109.46896 * 2 1
4 4 C 1.53001 * 109.47203 * 239.99394 * 2 1 3
5 5 C 1.50705 * 109.46648 * 173.10055 * 4 2 1
6 6 H 1.07993 * 120.00234 * 355.20108 * 5 4 2
7 7 C 1.37879 * 119.99438 * 175.19278 * 5 4 2
8 8 N 1.31516 * 120.00322 * 0.02562 * 7 5 4
9 9 Si 1.86803 * 119.99930 * 179.72564 * 7 5 4
10 10 H 1.48505 * 109.47151 * 270.28135 * 9 7 5
11 11 H 1.48507 * 109.46767 * 30.27852 * 9 7 5
12 12 H 1.48490 * 109.47417 * 150.27478 * 9 7 5
13 13 N 1.46910 * 109.46767 * 119.99760 * 2 1 3
14 14 C 1.48524 * 111.00040 * 33.57416 * 13 2 1
15 15 C 1.54941 * 103.22429 * 200.27963 * 14 13 2
16 16 C 1.54599 * 102.92099 * 37.41373 * 15 14 13
17 17 C 1.47903 * 110.99641 * 276.17361 * 13 2 1
18 18 C 1.52999 * 109.91943 * 26.49461 * 17 13 2
19 19 C 1.53002 * 109.91805 * 265.19870 * 17 13 2
20 20 O 1.42894 * 109.47015 * 180.02562 * 19 17 13
21 21 H 1.09000 * 109.46970 * 170.90724 * 1 2 3
22 22 H 1.08992 * 109.47451 * 290.90597 * 1 2 3
23 23 H 1.08997 * 109.46904 * 50.90833 * 1 2 3
24 24 H 1.08999 * 109.47082 * 53.10580 * 4 2 1
25 25 H 1.08995 * 109.46914 * 293.10230 * 4 2 1
26 26 H 0.97002 * 120.00085 * 359.72348 * 8 7 5
27 27 H 1.09001 * 110.66765 * 318.70850 * 14 13 2
28 28 H 1.08995 * 110.66984 * 81.84225 * 14 13 2
29 29 H 1.09008 * 110.72343 * 155.77185 * 15 14 13
30 30 H 1.09001 * 110.72512 * 279.05318 * 15 14 13
31 31 H 1.09004 * 110.30657 * 96.96387 * 16 15 14
32 32 H 1.08999 * 110.30375 * 219.02753 * 16 15 14
33 33 H 1.09003 * 109.46863 * 71.42839 * 18 17 13
34 34 H 1.08995 * 109.47199 * 191.43265 * 18 17 13
35 35 H 1.09003 * 109.47413 * 311.43133 * 18 17 13
36 36 H 1.09001 * 109.47014 * 300.00299 * 19 17 13
37 37 H 1.09003 * 109.47103 * 60.00065 * 19 17 13
38 38 H 0.96707 * 114.00077 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7214 -1.2492
5 6 3.5374 -0.5752 -1.3374
6 1 4.0629 0.0408 -0.6228
7 6 4.2364 -1.2282 -2.3304
8 7 3.5964 -1.9782 -3.2008
9 14 6.0915 -1.0410 -2.4445
10 1 6.4196 0.1189 -3.3118
11 1 6.6509 -0.8180 -1.0870
12 1 6.6788 -2.2751 -3.0251
13 7 2.0196 -0.6925 1.1996
14 6 1.1078 -1.8000 1.5843
15 6 1.4561 -2.0446 3.0741
16 6 1.7160 -0.6170 3.6073
17 6 2.0563 0.2219 2.3615
18 6 1.0203 1.3335 2.1829
19 6 3.4547 0.8257 2.5057
20 8 3.4794 1.7065 3.6307
21 1 -0.3633 -1.0148 -0.1624
22 1 -0.3634 0.3667 0.9599
23 1 -0.3633 0.6480 -0.7976
24 1 1.5795 -0.2838 -2.1349
25 1 1.7810 -1.7784 -1.1895
26 1 2.6331 -2.0752 -3.1418
27 1 0.0666 -1.4957 1.4776
28 1 1.3122 -2.6906 0.9901
29 1 0.6168 -2.5045 3.5960
30 1 2.3517 -2.6593 3.1649
31 1 0.8223 -0.2264 4.0940
32 1 2.5546 -0.6201 4.3037
33 1 0.0191 0.9202 2.3055
34 1 1.1873 2.1092 2.9301
35 1 1.1164 1.7630 1.1857
36 1 4.1817 0.0272 2.6538
37 1 3.7050 1.3822 1.6025
38 1 4.3372 2.1265 3.7826
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000723039176.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:13:16
Heat of formation + Delta-G solvation = -37.905884 kcal
Electronic energy + Delta-G solvation = -17288.790780 eV
Core-core repulsion = 14745.577851 eV
Total energy + Delta-G solvation = -2543.212929 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-39.99202 -36.35099 -34.31006 -32.35216 -31.22180 -28.52018 -27.59505 -25.67152
-24.55478 -22.88469 -21.68432 -19.62349 -18.07337 -17.06310 -16.59317 -15.59579
-15.34430 -14.40767 -14.20605 -13.68940 -13.46324 -13.32218 -13.01366 -12.58348
-11.97322 -11.92112 -11.74506 -11.37462 -11.11289 -10.98739 -10.78743 -10.63405
-10.58061 -10.40656 -10.16331 -10.05047 -9.96216 -9.59410 -9.32532 -8.42433
-8.18973 -7.59888 -6.19641 -3.84344 3.49658 3.54452 3.69648 4.11198
4.65769 4.87940 4.95511 5.10253 5.20818 5.49025 5.52436 5.57892
5.65605 5.73288 5.78550 5.87474 5.89564 5.98435 6.01060 6.06675
6.14369 6.28229 6.33571 6.39575 6.47184 6.48050 6.58004 6.65060
6.95091 7.30509 7.45745 7.71408 7.82563 7.94266 8.41683 8.65420
9.05912 9.84034 11.20951
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.025821 B = 0.009380 C = 0.008203
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1084.107645 B = 2984.350852 C = 3412.583458
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C 0.084 3.916
3 H 0.071 0.929
4 C 0.022 3.978
5 C -0.568 4.568
6 H 0.048 0.952
7 C 0.008 3.992
8 N -0.924 5.924
9 Si 1.069 2.931
10 H -0.291 1.291
11 H -0.290 1.290
12 H -0.287 1.287
13 N -0.478 5.478
14 C 0.031 3.969
15 C -0.126 4.126
16 C -0.112 4.112
17 C 0.093 3.907
18 C -0.175 4.175
19 C 0.097 3.903
20 O -0.579 6.579
21 H 0.054 0.946
22 H 0.062 0.938
23 H 0.051 0.949
24 H 0.004 0.996
25 H 0.010 0.990
26 H 0.266 0.734
27 H 0.050 0.950
28 H 0.080 0.920
29 H 0.063 0.937
30 H 0.071 0.929
31 H 0.061 0.939
32 H 0.069 0.931
33 H 0.056 0.944
34 H 0.060 0.940
35 H 0.069 0.931
36 H 0.052 0.948
37 H 0.049 0.951
38 H 0.375 0.625
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.037 4.233 12.606 13.897
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.256 4.256
2 C -0.024 4.024
3 H 0.089 0.911
4 C -0.015 4.015
5 C -0.607 4.607
6 H 0.067 0.933
7 C -0.194 4.194
8 N -0.561 5.561
9 Si 0.898 3.102
10 H -0.218 1.218
11 H -0.216 1.216
12 H -0.213 1.213
13 N -0.202 5.202
14 C -0.096 4.096
15 C -0.164 4.164
16 C -0.150 4.150
17 C 0.003 3.997
18 C -0.233 4.233
19 C 0.019 3.981
20 O -0.383 6.383
21 H 0.073 0.927
22 H 0.081 0.919
23 H 0.070 0.930
24 H 0.022 0.978
25 H 0.028 0.972
26 H 0.076 0.924
27 H 0.068 0.932
28 H 0.098 0.902
29 H 0.082 0.918
30 H 0.089 0.911
31 H 0.080 0.920
32 H 0.088 0.912
33 H 0.075 0.925
34 H 0.079 0.921
35 H 0.088 0.912
36 H 0.071 0.929
37 H 0.068 0.932
38 H 0.221 0.779
Dipole moment (debyes) X Y Z Total
from point charges -2.790 3.393 11.642 12.443
hybrid contribution -1.555 0.939 0.882 2.020
sum -4.346 4.332 12.524 13.947
Atomic orbital electron populations
1.22994 0.99301 1.01618 1.01660 1.21945 0.90387 0.98111 0.91918
0.91107 1.19224 0.97188 0.94909 0.90193 1.21915 0.91942 1.31698
1.15120 0.93331 1.25733 1.06411 0.93959 0.93262 1.70752 1.10761
1.38121 1.36506 0.83550 0.75041 0.76193 0.75403 1.21840 1.21637
1.21280 1.64730 1.46757 1.07518 1.01172 1.23328 0.95423 0.95898
0.94983 1.22521 1.01239 0.96809 0.95852 1.22398 1.01274 0.94640
0.96714 1.21629 0.93588 0.92638 0.91828 1.22809 0.98300 0.99317
1.02863 1.21986 0.96602 0.92047 0.87476 1.86365 1.37715 1.63670
1.50561 0.92727 0.91950 0.92971 0.97760 0.97162 0.92374 0.93179
0.90205 0.91822 0.91052 0.92033 0.91215 0.92512 0.92112 0.91202
0.92948 0.93224 0.77897
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -3.42 7.04 37.16 0.26 -3.16 16
2 C 0.08 1.75 1.77 -67.71 -0.12 1.63 16
3 H 0.07 1.51 6.14 -51.93 -0.32 1.19 16
4 C 0.02 0.57 3.92 -27.88 -0.11 0.46 16
5 C -0.57 -16.18 8.88 -34.44 -0.31 -16.49 16
6 H 0.05 1.38 7.75 -52.49 -0.41 0.97 16
7 C 0.01 0.24 5.46 -17.82 -0.10 0.15 16
8 N -0.92 -28.83 13.65 55.43 0.76 -28.07 16
9 Si 1.07 26.06 29.90 -169.99 -5.08 20.98 16
10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
13 N -0.48 -9.27 4.55 -207.14 -0.94 -10.21 16
14 C 0.03 0.54 5.74 -1.90 -0.01 0.53 16
15 C -0.13 -1.83 7.06 -24.87 -0.18 -2.01 16
16 C -0.11 -1.65 5.95 -25.38 -0.15 -1.80 16
17 C 0.09 1.55 0.64 -130.53 -0.08 1.47 16
18 C -0.18 -2.71 6.76 37.16 0.25 -2.46 16
19 C 0.10 1.60 6.07 37.16 0.23 1.82 16
20 O -0.58 -8.10 12.37 -35.23 -0.44 -8.53 16
21 H 0.05 0.94 6.80 -51.93 -0.35 0.59 16
22 H 0.06 0.96 4.04 -51.93 -0.21 0.75 16
23 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16
24 H 0.00 0.12 8.13 -51.93 -0.42 -0.31 16
25 H 0.01 0.28 7.71 -51.93 -0.40 -0.12 16
26 H 0.27 8.28 7.19 -40.82 -0.29 7.99 16
27 H 0.05 0.80 5.20 -51.93 -0.27 0.53 16
28 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16
29 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16
30 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16
31 H 0.06 0.84 7.62 -51.93 -0.40 0.44 16
32 H 0.07 1.01 7.54 -51.93 -0.39 0.62 16
33 H 0.06 0.82 5.94 -51.93 -0.31 0.51 16
34 H 0.06 0.91 7.35 -51.93 -0.38 0.53 16
35 H 0.07 1.15 4.99 -51.93 -0.26 0.89 16
36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16
37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16
38 H 0.37 3.58 9.12 45.56 0.42 3.99 16
LS Contribution 285.46 15.07 4.30 4.30
Total: -1.00 -31.70 285.46 -7.04 -38.75
By element:
Atomic # 1 Polarization: 7.97 SS G_CDS: -5.33 Total: 2.65 kcal
Atomic # 6 Polarization: -19.54 SS G_CDS: -0.32 Total: -19.86 kcal
Atomic # 7 Polarization: -38.10 SS G_CDS: -0.19 Total: -38.28 kcal
Atomic # 8 Polarization: -8.10 SS G_CDS: -0.44 Total: -8.53 kcal
Atomic # 14 Polarization: 26.06 SS G_CDS: -5.08 Total: 20.98 kcal
Total LS contribution 4.30 Total: 4.30 kcal
Total: -31.70 -7.04 -38.75 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000723039176.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.840 kcal
(2) G-P(sol) polarization free energy of solvation -31.701 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.861 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.745 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.906 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds