Wall clock time and date at job start Mon Mar 30 2020 04:13:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09001 * 109.46896 * 2 1
4 4 C 1.53001 * 109.47203 * 239.99394 * 2 1 3
5 5 C 1.50705 * 109.46648 * 173.10055 * 4 2 1
6 6 H 1.07993 * 120.00234 * 355.20108 * 5 4 2
7 7 C 1.37879 * 119.99438 * 175.19278 * 5 4 2
8 8 N 1.31516 * 120.00322 * 0.02562 * 7 5 4
9 9 Si 1.86803 * 119.99930 * 179.72564 * 7 5 4
10 10 H 1.48505 * 109.47151 * 270.28135 * 9 7 5
11 11 H 1.48507 * 109.46767 * 30.27852 * 9 7 5
12 12 H 1.48490 * 109.47417 * 150.27478 * 9 7 5
13 13 N 1.46910 * 109.46767 * 119.99760 * 2 1 3
14 14 C 1.48524 * 111.00040 * 33.57416 * 13 2 1
15 15 C 1.54941 * 103.22429 * 200.27963 * 14 13 2
16 16 C 1.54599 * 102.92099 * 37.41373 * 15 14 13
17 17 C 1.47903 * 110.99641 * 276.17361 * 13 2 1
18 18 C 1.52999 * 109.91943 * 26.49461 * 17 13 2
19 19 C 1.53002 * 109.91805 * 265.19870 * 17 13 2
20 20 O 1.42894 * 109.47015 * 180.02562 * 19 17 13
21 21 H 1.09000 * 109.46970 * 170.90724 * 1 2 3
22 22 H 1.08992 * 109.47451 * 290.90597 * 1 2 3
23 23 H 1.08997 * 109.46904 * 50.90833 * 1 2 3
24 24 H 1.08999 * 109.47082 * 53.10580 * 4 2 1
25 25 H 1.08995 * 109.46914 * 293.10230 * 4 2 1
26 26 H 0.97002 * 120.00085 * 359.72348 * 8 7 5
27 27 H 1.09001 * 110.66765 * 318.70850 * 14 13 2
28 28 H 1.08995 * 110.66984 * 81.84225 * 14 13 2
29 29 H 1.09008 * 110.72343 * 155.77185 * 15 14 13
30 30 H 1.09001 * 110.72512 * 279.05318 * 15 14 13
31 31 H 1.09004 * 110.30657 * 96.96387 * 16 15 14
32 32 H 1.08999 * 110.30375 * 219.02753 * 16 15 14
33 33 H 1.09003 * 109.46863 * 71.42839 * 18 17 13
34 34 H 1.08995 * 109.47199 * 191.43265 * 18 17 13
35 35 H 1.09003 * 109.47413 * 311.43133 * 18 17 13
36 36 H 1.09001 * 109.47014 * 300.00299 * 19 17 13
37 37 H 1.09003 * 109.47103 * 60.00065 * 19 17 13
38 38 H 0.96707 * 114.00077 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7214 -1.2492
5 6 3.5374 -0.5752 -1.3374
6 1 4.0629 0.0408 -0.6228
7 6 4.2364 -1.2282 -2.3304
8 7 3.5964 -1.9782 -3.2008
9 14 6.0915 -1.0410 -2.4445
10 1 6.4196 0.1189 -3.3118
11 1 6.6509 -0.8180 -1.0870
12 1 6.6788 -2.2751 -3.0251
13 7 2.0196 -0.6925 1.1996
14 6 1.1078 -1.8000 1.5843
15 6 1.4561 -2.0446 3.0741
16 6 1.7160 -0.6170 3.6073
17 6 2.0563 0.2219 2.3615
18 6 1.0203 1.3335 2.1829
19 6 3.4547 0.8257 2.5057
20 8 3.4794 1.7065 3.6307
21 1 -0.3633 -1.0148 -0.1624
22 1 -0.3634 0.3667 0.9599
23 1 -0.3633 0.6480 -0.7976
24 1 1.5795 -0.2838 -2.1349
25 1 1.7810 -1.7784 -1.1895
26 1 2.6331 -2.0752 -3.1418
27 1 0.0666 -1.4957 1.4776
28 1 1.3122 -2.6906 0.9901
29 1 0.6168 -2.5045 3.5960
30 1 2.3517 -2.6593 3.1649
31 1 0.8223 -0.2264 4.0940
32 1 2.5546 -0.6201 4.3037
33 1 0.0191 0.9202 2.3055
34 1 1.1873 2.1092 2.9301
35 1 1.1164 1.7630 1.1857
36 1 4.1817 0.0272 2.6538
37 1 3.7050 1.3822 1.6025
38 1 4.3372 2.1265 3.7826
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000723039176.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:13:16
Heat of formation + Delta-G solvation = -61.156270 kcal
Electronic energy + Delta-G solvation = -17289.798993 eV
Core-core repulsion = 14745.577851 eV
Total energy + Delta-G solvation = -2544.221142 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-41.36647 -37.59468 -36.06158 -34.24821 -32.50103 -29.99082 -29.37661 -27.09256
-25.92140 -24.88579 -23.16443 -21.05159 -19.54282 -18.75829 -18.21711 -16.97293
-16.66284 -15.75845 -15.66686 -15.56555 -15.27241 -14.66287 -14.42529 -13.88316
-13.64985 -13.56074 -13.28780 -12.83472 -12.66977 -12.48786 -12.41946 -12.23411
-11.99473 -11.92368 -11.81152 -11.60667 -11.26600 -11.04818 -10.82927 -10.56554
-10.45974 -9.06091 -8.56271 -6.21314 1.51487 1.61656 1.78482 2.61281
2.82272 3.27393 3.59869 3.72015 3.85140 3.99902 4.11561 4.23300
4.30700 4.38253 4.42426 4.52253 4.59551 4.66221 4.72588 4.82106
4.84688 4.94837 5.05304 5.07372 5.11638 5.16320 5.23189 5.25750
5.28317 5.39943 5.52638 6.10562 6.27826 6.31683 6.40448 6.73621
6.87736 7.55904 8.84605
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.025821 B = 0.009380 C = 0.008203
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1084.107645 B = 2984.350852 C = 3412.583458
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C 0.095 3.905
3 H 0.062 0.938
4 C 0.025 3.975
5 C -0.573 4.573
6 H 0.046 0.954
7 C -0.047 4.047
8 N -0.949 5.949
9 Si 1.115 2.885
10 H -0.275 1.275
11 H -0.272 1.272
12 H -0.287 1.287
13 N -0.506 5.506
14 C 0.028 3.972
15 C -0.117 4.117
16 C -0.105 4.105
17 C 0.087 3.913
18 C -0.168 4.168
19 C 0.105 3.895
20 O -0.576 6.576
21 H 0.051 0.949
22 H 0.089 0.911
23 H 0.055 0.945
24 H -0.017 1.017
25 H -0.014 1.014
26 H 0.252 0.748
27 H 0.065 0.935
28 H 0.053 0.947
29 H 0.093 0.907
30 H 0.063 0.937
31 H 0.080 0.920
32 H 0.072 0.928
33 H 0.070 0.930
34 H 0.068 0.932
35 H 0.056 0.944
36 H 0.042 0.958
37 H 0.027 0.973
38 H 0.395 0.605
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.140 5.044 14.689 16.073
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.245 4.245
2 C -0.014 4.014
3 H 0.080 0.920
4 C -0.012 4.012
5 C -0.611 4.611
6 H 0.064 0.936
7 C -0.243 4.243
8 N -0.589 5.589
9 Si 0.938 3.062
10 H -0.200 1.200
11 H -0.197 1.197
12 H -0.213 1.213
13 N -0.231 5.231
14 C -0.100 4.100
15 C -0.155 4.155
16 C -0.143 4.143
17 C -0.003 4.003
18 C -0.225 4.225
19 C 0.026 3.974
20 O -0.384 6.384
21 H 0.070 0.930
22 H 0.107 0.893
23 H 0.074 0.926
24 H 0.001 0.999
25 H 0.004 0.996
26 H 0.061 0.939
27 H 0.083 0.917
28 H 0.072 0.928
29 H 0.112 0.888
30 H 0.082 0.918
31 H 0.099 0.901
32 H 0.091 0.909
33 H 0.089 0.911
34 H 0.087 0.913
35 H 0.074 0.926
36 H 0.060 0.940
37 H 0.045 0.955
38 H 0.244 0.756
Dipole moment (debyes) X Y Z Total
from point charges -2.899 4.227 13.750 14.675
hybrid contribution -1.520 0.712 0.263 1.700
sum -4.419 4.939 14.014 15.502
Atomic orbital electron populations
1.22881 0.96605 1.01765 1.03292 1.21624 0.92486 0.96700 0.90551
0.91963 1.19132 0.95972 0.93846 0.92241 1.22247 0.93474 1.30847
1.14519 0.93587 1.27245 1.10752 0.93330 0.92941 1.70891 1.10026
1.40033 1.37946 0.82952 0.69969 0.76663 0.76618 1.20046 1.19676
1.21262 1.64545 1.47957 1.08778 1.01822 1.23356 0.95845 0.94280
0.96493 1.22492 1.02097 0.97002 0.93926 1.22368 1.02231 0.94065
0.95649 1.21738 0.94066 0.92939 0.91553 1.22716 0.98529 0.98997
1.02279 1.21759 0.96465 0.91786 0.87378 1.86319 1.39566 1.63268
1.49205 0.92955 0.89317 0.92642 0.99859 0.99602 0.93902 0.91696
0.92803 0.88818 0.91819 0.90115 0.90912 0.91108 0.91305 0.92568
0.93998 0.95461 0.75568
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -6.29 7.04 71.98 0.51 -5.78 16
2 C 0.09 3.94 1.77 44.91 0.08 4.02 16
3 H 0.06 2.67 6.14 -2.39 -0.01 2.66 16
4 C 0.03 1.35 3.92 29.85 0.12 1.47 16
5 C -0.57 -33.31 8.88 25.60 0.23 -33.08 16
6 H 0.05 2.65 7.75 -2.91 -0.02 2.63 16
7 C -0.05 -2.82 5.46 84.65 0.46 -2.36 16
8 N -0.95 -60.83 13.65 21.45 0.29 -60.54 16
9 Si 1.12 52.49 29.90 68.60 2.05 54.54 16
10 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16
11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16
12 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16
13 N -0.51 -19.41 4.55 -809.27 -3.68 -23.09 16
14 C 0.03 0.92 5.74 86.65 0.50 1.42 16
15 C -0.12 -3.11 7.06 31.80 0.22 -2.88 16
16 C -0.11 -2.75 5.95 31.47 0.19 -2.57 16
17 C 0.09 2.72 0.64 3.67 0.00 2.73 16
18 C -0.17 -4.74 6.76 71.98 0.49 -4.26 16
19 C 0.10 3.32 6.07 71.98 0.44 3.76 16
20 O -0.58 -14.72 12.37 -148.98 -1.84 -16.56 16
21 H 0.05 1.77 6.80 -2.39 -0.02 1.75 16
22 H 0.09 2.50 4.04 -2.39 -0.01 2.49 16
23 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16
24 H -0.02 -0.94 8.13 -2.39 -0.02 -0.96 16
25 H -0.01 -0.83 7.71 -2.39 -0.02 -0.85 16
26 H 0.25 16.36 7.19 -92.71 -0.67 15.69 16
27 H 0.07 1.95 5.20 -2.39 -0.01 1.94 16
28 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16
29 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16
30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16
31 H 0.08 1.83 7.62 -2.39 -0.02 1.82 16
32 H 0.07 1.88 7.54 -2.39 -0.02 1.86 16
33 H 0.07 1.79 5.94 -2.39 -0.01 1.77 16
34 H 0.07 1.85 7.35 -2.39 -0.02 1.83 16
35 H 0.06 1.75 4.99 -2.39 -0.01 1.74 16
36 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16
37 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16
38 H 0.39 6.56 9.12 -74.05 -0.68 5.88 16
Total: -1.00 -68.95 285.46 0.52 -68.43
By element:
Atomic # 1 Polarization: 14.28 SS G_CDS: 0.47 Total: 14.75 kcal
Atomic # 6 Polarization: -40.77 SS G_CDS: 3.23 Total: -37.54 kcal
Atomic # 7 Polarization: -80.24 SS G_CDS: -3.39 Total: -83.63 kcal
Atomic # 8 Polarization: -14.72 SS G_CDS: -1.84 Total: -16.56 kcal
Atomic # 14 Polarization: 52.49 SS G_CDS: 2.05 Total: 54.54 kcal
Total: -68.95 0.52 -68.43 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000723039176.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.276 kcal
(2) G-P(sol) polarization free energy of solvation -68.952 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.676 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.520 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.432 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.156 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds