Wall clock time and date at job start Mon Mar 30 2020 04:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46896 * 2 1 4 4 C 1.53001 * 109.47203 * 239.99394 * 2 1 3 5 5 C 1.50705 * 109.46648 * 173.10055 * 4 2 1 6 6 H 1.07993 * 120.00234 * 355.20108 * 5 4 2 7 7 C 1.37879 * 119.99438 * 175.19278 * 5 4 2 8 8 N 1.31516 * 120.00322 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99930 * 179.72564 * 7 5 4 10 10 H 1.48505 * 109.47151 * 270.28135 * 9 7 5 11 11 H 1.48507 * 109.46767 * 30.27852 * 9 7 5 12 12 H 1.48490 * 109.47417 * 150.27478 * 9 7 5 13 13 N 1.46910 * 109.46767 * 119.99760 * 2 1 3 14 14 C 1.48524 * 111.00040 * 33.57416 * 13 2 1 15 15 C 1.54941 * 103.22429 * 200.27963 * 14 13 2 16 16 C 1.54599 * 102.92099 * 37.41373 * 15 14 13 17 17 C 1.47903 * 110.99641 * 276.17361 * 13 2 1 18 18 C 1.52999 * 109.91943 * 26.49461 * 17 13 2 19 19 C 1.53002 * 109.91805 * 265.19870 * 17 13 2 20 20 O 1.42894 * 109.47015 * 180.02562 * 19 17 13 21 21 H 1.09000 * 109.46970 * 170.90724 * 1 2 3 22 22 H 1.08992 * 109.47451 * 290.90597 * 1 2 3 23 23 H 1.08997 * 109.46904 * 50.90833 * 1 2 3 24 24 H 1.08999 * 109.47082 * 53.10580 * 4 2 1 25 25 H 1.08995 * 109.46914 * 293.10230 * 4 2 1 26 26 H 0.97002 * 120.00085 * 359.72348 * 8 7 5 27 27 H 1.09001 * 110.66765 * 318.70850 * 14 13 2 28 28 H 1.08995 * 110.66984 * 81.84225 * 14 13 2 29 29 H 1.09008 * 110.72343 * 155.77185 * 15 14 13 30 30 H 1.09001 * 110.72512 * 279.05318 * 15 14 13 31 31 H 1.09004 * 110.30657 * 96.96387 * 16 15 14 32 32 H 1.08999 * 110.30375 * 219.02753 * 16 15 14 33 33 H 1.09003 * 109.46863 * 71.42839 * 18 17 13 34 34 H 1.08995 * 109.47199 * 191.43265 * 18 17 13 35 35 H 1.09003 * 109.47413 * 311.43133 * 18 17 13 36 36 H 1.09001 * 109.47014 * 300.00299 * 19 17 13 37 37 H 1.09003 * 109.47103 * 60.00065 * 19 17 13 38 38 H 0.96707 * 114.00077 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5374 -0.5752 -1.3374 6 1 4.0629 0.0408 -0.6228 7 6 4.2364 -1.2282 -2.3304 8 7 3.5964 -1.9782 -3.2008 9 14 6.0915 -1.0410 -2.4445 10 1 6.4196 0.1189 -3.3118 11 1 6.6509 -0.8180 -1.0870 12 1 6.6788 -2.2751 -3.0251 13 7 2.0196 -0.6925 1.1996 14 6 1.1078 -1.8000 1.5843 15 6 1.4561 -2.0446 3.0741 16 6 1.7160 -0.6170 3.6073 17 6 2.0563 0.2219 2.3615 18 6 1.0203 1.3335 2.1829 19 6 3.4547 0.8257 2.5057 20 8 3.4794 1.7065 3.6307 21 1 -0.3633 -1.0148 -0.1624 22 1 -0.3634 0.3667 0.9599 23 1 -0.3633 0.6480 -0.7976 24 1 1.5795 -0.2838 -2.1349 25 1 1.7810 -1.7784 -1.1895 26 1 2.6331 -2.0752 -3.1418 27 1 0.0666 -1.4957 1.4776 28 1 1.3122 -2.6906 0.9901 29 1 0.6168 -2.5045 3.5960 30 1 2.3517 -2.6593 3.1649 31 1 0.8223 -0.2264 4.0940 32 1 2.5546 -0.6201 4.3037 33 1 0.0191 0.9202 2.3055 34 1 1.1873 2.1092 2.9301 35 1 1.1164 1.7630 1.1857 36 1 4.1817 0.0272 2.6538 37 1 3.7050 1.3822 1.6025 38 1 4.3372 2.1265 3.7826 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723039176.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:16 Heat of formation + Delta-G solvation = -61.156270 kcal Electronic energy + Delta-G solvation = -17289.798993 eV Core-core repulsion = 14745.577851 eV Total energy + Delta-G solvation = -2544.221142 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.36647 -37.59468 -36.06158 -34.24821 -32.50103 -29.99082 -29.37661 -27.09256 -25.92140 -24.88579 -23.16443 -21.05159 -19.54282 -18.75829 -18.21711 -16.97293 -16.66284 -15.75845 -15.66686 -15.56555 -15.27241 -14.66287 -14.42529 -13.88316 -13.64985 -13.56074 -13.28780 -12.83472 -12.66977 -12.48786 -12.41946 -12.23411 -11.99473 -11.92368 -11.81152 -11.60667 -11.26600 -11.04818 -10.82927 -10.56554 -10.45974 -9.06091 -8.56271 -6.21314 1.51487 1.61656 1.78482 2.61281 2.82272 3.27393 3.59869 3.72015 3.85140 3.99902 4.11561 4.23300 4.30700 4.38253 4.42426 4.52253 4.59551 4.66221 4.72588 4.82106 4.84688 4.94837 5.05304 5.07372 5.11638 5.16320 5.23189 5.25750 5.28317 5.39943 5.52638 6.10562 6.27826 6.31683 6.40448 6.73621 6.87736 7.55904 8.84605 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025821 B = 0.009380 C = 0.008203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.107645 B = 2984.350852 C = 3412.583458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.095 3.905 3 H 0.062 0.938 4 C 0.025 3.975 5 C -0.573 4.573 6 H 0.046 0.954 7 C -0.047 4.047 8 N -0.949 5.949 9 Si 1.115 2.885 10 H -0.275 1.275 11 H -0.272 1.272 12 H -0.287 1.287 13 N -0.506 5.506 14 C 0.028 3.972 15 C -0.117 4.117 16 C -0.105 4.105 17 C 0.087 3.913 18 C -0.168 4.168 19 C 0.105 3.895 20 O -0.576 6.576 21 H 0.051 0.949 22 H 0.089 0.911 23 H 0.055 0.945 24 H -0.017 1.017 25 H -0.014 1.014 26 H 0.252 0.748 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.042 0.958 37 H 0.027 0.973 38 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.140 5.044 14.689 16.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.014 4.014 3 H 0.080 0.920 4 C -0.012 4.012 5 C -0.611 4.611 6 H 0.064 0.936 7 C -0.243 4.243 8 N -0.589 5.589 9 Si 0.938 3.062 10 H -0.200 1.200 11 H -0.197 1.197 12 H -0.213 1.213 13 N -0.231 5.231 14 C -0.100 4.100 15 C -0.155 4.155 16 C -0.143 4.143 17 C -0.003 4.003 18 C -0.225 4.225 19 C 0.026 3.974 20 O -0.384 6.384 21 H 0.070 0.930 22 H 0.107 0.893 23 H 0.074 0.926 24 H 0.001 0.999 25 H 0.004 0.996 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.045 0.955 38 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -2.899 4.227 13.750 14.675 hybrid contribution -1.520 0.712 0.263 1.700 sum -4.419 4.939 14.014 15.502 Atomic orbital electron populations 1.22881 0.96605 1.01765 1.03292 1.21624 0.92486 0.96700 0.90551 0.91963 1.19132 0.95972 0.93846 0.92241 1.22247 0.93474 1.30847 1.14519 0.93587 1.27245 1.10752 0.93330 0.92941 1.70891 1.10026 1.40033 1.37946 0.82952 0.69969 0.76663 0.76618 1.20046 1.19676 1.21262 1.64545 1.47957 1.08778 1.01822 1.23356 0.95845 0.94280 0.96493 1.22492 1.02097 0.97002 0.93926 1.22368 1.02231 0.94065 0.95649 1.21738 0.94066 0.92939 0.91553 1.22716 0.98529 0.98997 1.02279 1.21759 0.96465 0.91786 0.87378 1.86319 1.39566 1.63268 1.49205 0.92955 0.89317 0.92642 0.99859 0.99602 0.93902 0.91696 0.92803 0.88818 0.91819 0.90115 0.90912 0.91108 0.91305 0.92568 0.93998 0.95461 0.75568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.29 7.04 71.98 0.51 -5.78 16 2 C 0.09 3.94 1.77 44.91 0.08 4.02 16 3 H 0.06 2.67 6.14 -2.39 -0.01 2.66 16 4 C 0.03 1.35 3.92 29.85 0.12 1.47 16 5 C -0.57 -33.31 8.88 25.60 0.23 -33.08 16 6 H 0.05 2.65 7.75 -2.91 -0.02 2.63 16 7 C -0.05 -2.82 5.46 84.65 0.46 -2.36 16 8 N -0.95 -60.83 13.65 21.45 0.29 -60.54 16 9 Si 1.12 52.49 29.90 68.60 2.05 54.54 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 13 N -0.51 -19.41 4.55 -809.27 -3.68 -23.09 16 14 C 0.03 0.92 5.74 86.65 0.50 1.42 16 15 C -0.12 -3.11 7.06 31.80 0.22 -2.88 16 16 C -0.11 -2.75 5.95 31.47 0.19 -2.57 16 17 C 0.09 2.72 0.64 3.67 0.00 2.73 16 18 C -0.17 -4.74 6.76 71.98 0.49 -4.26 16 19 C 0.10 3.32 6.07 71.98 0.44 3.76 16 20 O -0.58 -14.72 12.37 -148.98 -1.84 -16.56 16 21 H 0.05 1.77 6.80 -2.39 -0.02 1.75 16 22 H 0.09 2.50 4.04 -2.39 -0.01 2.49 16 23 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 24 H -0.02 -0.94 8.13 -2.39 -0.02 -0.96 16 25 H -0.01 -0.83 7.71 -2.39 -0.02 -0.85 16 26 H 0.25 16.36 7.19 -92.71 -0.67 15.69 16 27 H 0.07 1.95 5.20 -2.39 -0.01 1.94 16 28 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.08 1.83 7.62 -2.39 -0.02 1.82 16 32 H 0.07 1.88 7.54 -2.39 -0.02 1.86 16 33 H 0.07 1.79 5.94 -2.39 -0.01 1.77 16 34 H 0.07 1.85 7.35 -2.39 -0.02 1.83 16 35 H 0.06 1.75 4.99 -2.39 -0.01 1.74 16 36 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.39 6.56 9.12 -74.05 -0.68 5.88 16 Total: -1.00 -68.95 285.46 0.52 -68.43 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.47 Total: 14.75 kcal Atomic # 6 Polarization: -40.77 SS G_CDS: 3.23 Total: -37.54 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -3.39 Total: -83.63 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -1.84 Total: -16.56 kcal Atomic # 14 Polarization: 52.49 SS G_CDS: 2.05 Total: 54.54 kcal Total: -68.95 0.52 -68.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723039176.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.276 kcal (2) G-P(sol) polarization free energy of solvation -68.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds