Wall clock time and date at job start Mon Mar 30 2020 04:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46736 * 2 1 4 4 C 1.52995 * 109.46917 * 119.99592 * 2 1 3 5 5 C 1.50703 * 109.47014 * 201.58454 * 4 2 1 6 6 H 1.07996 * 119.99988 * 3.13341 * 5 4 2 7 7 C 1.37875 * 119.99859 * 183.12828 * 5 4 2 8 8 N 1.31519 * 119.99689 * 174.98778 * 7 5 4 9 9 Si 1.86795 * 120.00321 * 354.98741 * 7 5 4 10 10 H 1.48501 * 109.47446 * 270.00332 * 9 7 5 11 11 H 1.48505 * 109.47293 * 29.99950 * 9 7 5 12 12 H 1.48499 * 109.47393 * 150.00084 * 9 7 5 13 13 N 1.46901 * 109.47051 * 239.99941 * 2 1 3 14 14 C 1.47845 * 110.99686 * 200.64373 * 13 2 1 15 15 C 1.54909 * 104.79187 * 213.63566 * 14 13 2 16 16 C 1.55141 * 101.65750 * 37.06687 * 15 14 13 17 17 C 1.47436 * 110.99979 * 79.79658 * 13 2 1 18 18 C 1.53004 * 109.88823 * 242.66183 * 17 13 2 19 19 C 1.53003 * 109.89291 * 3.84971 * 17 13 2 20 20 O 1.42898 * 109.47148 * 184.81979 * 19 17 13 21 21 H 1.08998 * 109.47050 * 60.00751 * 1 2 3 22 22 H 1.08999 * 109.46736 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47407 * 299.99922 * 1 2 3 24 24 H 1.09005 * 109.46789 * 81.59251 * 4 2 1 25 25 H 1.08994 * 109.47510 * 321.58985 * 4 2 1 26 26 H 0.97006 * 119.99623 * 180.02562 * 8 7 5 27 27 H 1.09001 * 110.37274 * 332.46026 * 14 13 2 28 28 H 1.08992 * 110.38104 * 94.69595 * 14 13 2 29 29 H 1.09000 * 110.99147 * 155.15932 * 15 14 13 30 30 H 1.08998 * 110.98941 * 278.93682 * 15 14 13 31 31 H 1.09007 * 110.70407 * 82.72277 * 16 15 14 32 32 H 1.08993 * 110.70966 * 205.79178 * 16 15 14 33 33 H 1.08993 * 109.47131 * 60.00232 * 18 17 13 34 34 H 1.09003 * 109.47368 * 180.02562 * 18 17 13 35 35 H 1.08997 * 109.47204 * 299.99756 * 18 17 13 36 36 H 1.08996 * 109.46623 * 304.82286 * 19 17 13 37 37 H 1.09000 * 109.46499 * 64.82074 * 19 17 13 38 38 H 0.96695 * 113.99609 * 184.99985 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.4531 -0.2851 1.5394 6 1 3.9211 0.4716 0.9273 7 6 4.1483 -0.8521 2.5863 8 7 5.4124 -0.5447 2.7793 9 14 3.2949 -2.0570 3.7306 10 1 2.6841 -1.3160 4.8634 11 1 2.2351 -2.7821 2.9847 12 1 4.2868 -3.0306 4.2533 13 7 2.0197 -0.6925 -1.1994 14 6 3.4141 -1.1484 -1.0158 15 6 4.0567 -1.0314 -2.4205 16 6 3.3928 0.2620 -2.9621 17 6 1.9659 0.1909 -2.3786 18 6 1.0062 -0.3885 -3.4198 19 6 1.5040 1.5886 -1.9613 20 8 1.3471 2.4052 -3.1234 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 2.0194 -1.7979 1.0810 25 1 1.4019 -0.4737 2.0976 26 1 5.9017 -0.9439 3.5157 27 1 3.9335 -0.5045 -0.3061 28 1 3.4332 -2.1828 -0.6730 29 1 5.1378 -0.9139 -2.3467 30 1 3.8008 -1.8911 -3.0397 31 1 3.9153 1.1458 -2.5958 32 1 3.3673 0.2550 -4.0517 33 1 0.0091 -0.4726 -2.9877 34 1 0.9719 0.2693 -4.2883 35 1 1.3542 -1.3752 -3.7254 36 1 0.5509 1.5149 -1.4376 37 1 2.2477 2.0350 -1.3012 38 1 1.1297 3.3272 -2.9297 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723039178.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:21 Heat of formation + Delta-G solvation = -31.158223 kcal Electronic energy + Delta-G solvation = -17400.089773 eV Core-core repulsion = 14857.169444 eV Total energy + Delta-G solvation = -2542.920329 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.80704 -36.14480 -34.35966 -32.47505 -31.11958 -28.62793 -27.96371 -26.22170 -24.35915 -22.71967 -20.78544 -19.79397 -18.14845 -17.28526 -16.74832 -15.54632 -14.90115 -14.62563 -14.20592 -13.59281 -13.33315 -12.84187 -12.61646 -12.40493 -12.12374 -11.84692 -11.66820 -11.61889 -11.45484 -11.10437 -10.82689 -10.66074 -10.39366 -10.19936 -10.13293 -10.01443 -9.79059 -9.54450 -9.26461 -9.08350 -8.53617 -7.39629 -6.11193 -4.05338 3.27951 3.36461 3.41278 4.33491 4.40914 4.73711 5.06557 5.22370 5.33847 5.38182 5.56764 5.65570 5.77562 5.84086 5.97526 5.99850 6.08911 6.15389 6.24693 6.32938 6.39424 6.44674 6.50045 6.58286 6.65378 6.77391 6.81035 6.96324 7.18837 7.22529 7.41707 7.70063 7.77448 7.87667 8.05598 8.41324 8.86591 9.50166 11.00377 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033341 B = 0.009093 C = 0.008343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.602495 B = 3078.677522 C = 3355.437432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.073 3.927 3 H 0.048 0.952 4 C -0.014 4.014 5 C -0.517 4.517 6 H 0.075 0.925 7 C 0.069 3.931 8 N -0.899 5.899 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.264 1.264 12 H -0.289 1.289 13 N -0.509 5.509 14 C 0.020 3.980 15 C -0.135 4.135 16 C -0.122 4.122 17 C 0.102 3.898 18 C -0.116 4.116 19 C 0.050 3.950 20 O -0.574 6.574 21 H 0.051 0.949 22 H 0.056 0.944 23 H 0.051 0.949 24 H 0.029 0.971 25 H 0.016 0.984 26 H 0.264 0.736 27 H 0.119 0.881 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.308 2.260 -9.006 11.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.035 4.035 3 H 0.065 0.935 4 C -0.052 4.052 5 C -0.554 4.554 6 H 0.093 0.907 7 C -0.133 4.133 8 N -0.537 5.537 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.188 1.188 12 H -0.215 1.215 13 N -0.235 5.235 14 C -0.106 4.106 15 C -0.173 4.173 16 C -0.160 4.160 17 C 0.012 3.988 18 C -0.174 4.174 19 C -0.027 4.027 20 O -0.377 6.377 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.047 0.953 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.136 0.864 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -7.342 1.220 -9.250 11.873 hybrid contribution 0.090 0.558 1.214 1.339 sum -7.252 1.778 -8.036 10.970 Atomic orbital electron populations 1.22116 0.96493 1.01711 1.00134 1.21878 0.93375 0.97054 0.91237 0.93453 1.19769 0.96659 0.96774 0.91975 1.21047 0.96628 1.23314 1.14411 0.90717 1.24984 0.94604 0.96329 0.97384 1.69917 1.08444 1.44331 1.31009 0.86812 0.79777 0.81457 0.81405 1.20429 1.18809 1.21481 1.63828 1.22594 1.34908 1.02168 1.23848 0.87554 1.03045 0.96142 1.22770 0.99594 0.96840 0.98092 1.22726 0.95034 0.98226 1.00058 1.21592 0.95182 0.89381 0.92670 1.21625 0.98418 1.00004 0.97348 1.23291 1.00732 0.91808 0.86909 1.86434 1.93953 1.23899 1.33461 0.93059 0.92461 0.93016 0.95313 0.96623 0.92671 0.86367 0.91262 0.91532 0.92204 0.91936 0.91688 0.93135 0.92627 0.92931 0.91445 0.93422 0.78261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 8.73 37.16 0.32 -2.13 16 2 C 0.07 1.43 1.87 -67.71 -0.13 1.31 16 3 H 0.05 0.97 5.07 -51.93 -0.26 0.71 16 4 C -0.01 -0.33 3.20 -27.88 -0.09 -0.42 16 5 C -0.52 -13.73 7.03 -34.44 -0.24 -13.98 16 6 H 0.08 2.14 6.59 -52.49 -0.35 1.80 16 7 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 8 N -0.90 -26.55 13.96 55.43 0.77 -25.78 16 9 Si 0.88 21.29 27.50 -169.99 -4.67 16.61 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.26 -6.23 6.52 56.52 0.37 -5.86 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 N -0.51 -9.73 4.64 -207.89 -0.96 -10.70 16 14 C 0.02 0.41 5.13 -2.30 -0.01 0.40 16 15 C -0.13 -2.34 7.08 -24.59 -0.17 -2.51 16 16 C -0.12 -2.03 5.85 -24.90 -0.15 -2.18 16 17 C 0.10 1.72 0.80 -130.61 -0.10 1.61 16 18 C -0.12 -1.79 8.52 37.16 0.32 -1.47 16 19 C 0.05 0.79 4.39 37.16 0.16 0.95 16 20 O -0.57 -7.99 12.60 -35.23 -0.44 -8.43 16 21 H 0.05 0.78 5.37 -51.93 -0.28 0.50 16 22 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 24 H 0.03 0.69 6.73 -51.93 -0.35 0.34 16 25 H 0.02 0.36 7.39 -51.93 -0.38 -0.02 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.12 2.83 3.82 -51.93 -0.20 2.63 16 28 H 0.07 1.50 7.95 -51.93 -0.41 1.08 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 1.08 7.77 -51.92 -0.40 0.67 16 32 H 0.06 1.00 7.84 -51.93 -0.41 0.59 16 33 H 0.05 0.76 7.94 -51.93 -0.41 0.35 16 34 H 0.05 0.82 7.54 -51.93 -0.39 0.43 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 1.03 4.15 -51.93 -0.22 0.81 16 37 H 0.05 0.81 6.74 -51.93 -0.35 0.46 16 38 H 0.37 3.50 9.12 45.56 0.42 3.91 16 LS Contribution 280.53 15.07 4.23 4.23 Total: -1.00 -29.01 280.53 -6.55 -35.56 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.28 Total: 5.10 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -0.19 Total: -16.59 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: -0.19 Total: -36.47 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.44 Total: -8.43 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.01 -6.55 -35.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723039178.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.397 kcal (2) G-P(sol) polarization free energy of solvation -29.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds