Wall clock time and date at job start Mon Mar 30 2020 04:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46736 * 2 1 4 4 C 1.52995 * 109.46917 * 119.99592 * 2 1 3 5 5 C 1.50703 * 109.47014 * 201.58454 * 4 2 1 6 6 H 1.07996 * 119.99988 * 3.13341 * 5 4 2 7 7 C 1.37875 * 119.99859 * 183.12828 * 5 4 2 8 8 N 1.31519 * 119.99689 * 174.98778 * 7 5 4 9 9 Si 1.86795 * 120.00321 * 354.98741 * 7 5 4 10 10 H 1.48501 * 109.47446 * 270.00332 * 9 7 5 11 11 H 1.48505 * 109.47293 * 29.99950 * 9 7 5 12 12 H 1.48499 * 109.47393 * 150.00084 * 9 7 5 13 13 N 1.46901 * 109.47051 * 239.99941 * 2 1 3 14 14 C 1.47845 * 110.99686 * 200.64373 * 13 2 1 15 15 C 1.54909 * 104.79187 * 213.63566 * 14 13 2 16 16 C 1.55141 * 101.65750 * 37.06687 * 15 14 13 17 17 C 1.47436 * 110.99979 * 79.79658 * 13 2 1 18 18 C 1.53004 * 109.88823 * 242.66183 * 17 13 2 19 19 C 1.53003 * 109.89291 * 3.84971 * 17 13 2 20 20 O 1.42898 * 109.47148 * 184.81979 * 19 17 13 21 21 H 1.08998 * 109.47050 * 60.00751 * 1 2 3 22 22 H 1.08999 * 109.46736 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47407 * 299.99922 * 1 2 3 24 24 H 1.09005 * 109.46789 * 81.59251 * 4 2 1 25 25 H 1.08994 * 109.47510 * 321.58985 * 4 2 1 26 26 H 0.97006 * 119.99623 * 180.02562 * 8 7 5 27 27 H 1.09001 * 110.37274 * 332.46026 * 14 13 2 28 28 H 1.08992 * 110.38104 * 94.69595 * 14 13 2 29 29 H 1.09000 * 110.99147 * 155.15932 * 15 14 13 30 30 H 1.08998 * 110.98941 * 278.93682 * 15 14 13 31 31 H 1.09007 * 110.70407 * 82.72277 * 16 15 14 32 32 H 1.08993 * 110.70966 * 205.79178 * 16 15 14 33 33 H 1.08993 * 109.47131 * 60.00232 * 18 17 13 34 34 H 1.09003 * 109.47368 * 180.02562 * 18 17 13 35 35 H 1.08997 * 109.47204 * 299.99756 * 18 17 13 36 36 H 1.08996 * 109.46623 * 304.82286 * 19 17 13 37 37 H 1.09000 * 109.46499 * 64.82074 * 19 17 13 38 38 H 0.96695 * 113.99609 * 184.99985 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.4531 -0.2851 1.5394 6 1 3.9211 0.4716 0.9273 7 6 4.1483 -0.8521 2.5863 8 7 5.4124 -0.5447 2.7793 9 14 3.2949 -2.0570 3.7306 10 1 2.6841 -1.3160 4.8634 11 1 2.2351 -2.7821 2.9847 12 1 4.2868 -3.0306 4.2533 13 7 2.0197 -0.6925 -1.1994 14 6 3.4141 -1.1484 -1.0158 15 6 4.0567 -1.0314 -2.4205 16 6 3.3928 0.2620 -2.9621 17 6 1.9659 0.1909 -2.3786 18 6 1.0062 -0.3885 -3.4198 19 6 1.5040 1.5886 -1.9613 20 8 1.3471 2.4052 -3.1234 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 2.0194 -1.7979 1.0810 25 1 1.4019 -0.4737 2.0976 26 1 5.9017 -0.9439 3.5157 27 1 3.9335 -0.5045 -0.3061 28 1 3.4332 -2.1828 -0.6730 29 1 5.1378 -0.9139 -2.3467 30 1 3.8008 -1.8911 -3.0397 31 1 3.9153 1.1458 -2.5958 32 1 3.3673 0.2550 -4.0517 33 1 0.0091 -0.4726 -2.9877 34 1 0.9719 0.2693 -4.2883 35 1 1.3542 -1.3752 -3.7254 36 1 0.5509 1.5149 -1.4376 37 1 2.2477 2.0350 -1.3012 38 1 1.1297 3.3272 -2.9297 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723039178.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:20 Heat of formation + Delta-G solvation = -52.641160 kcal Electronic energy + Delta-G solvation = -17401.021343 eV Core-core repulsion = 14857.169444 eV Total energy + Delta-G solvation = -2543.851899 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.25200 -37.38621 -35.98675 -34.39309 -32.59585 -30.29717 -29.54860 -27.49467 -25.80311 -24.55689 -22.32447 -21.40047 -19.67506 -18.79128 -18.42803 -17.02289 -16.40951 -16.17826 -15.80287 -15.07185 -14.91672 -14.49704 -14.16731 -14.01009 -13.59348 -13.34008 -13.17150 -13.06119 -12.79557 -12.72986 -12.42256 -12.27815 -11.95846 -11.81522 -11.73089 -11.44587 -11.42761 -11.19616 -11.04694 -10.62782 -10.56107 -8.98274 -8.25923 -6.22821 1.34985 1.38030 1.48871 2.37067 2.97761 3.10812 3.45835 3.72848 3.91060 4.09639 4.17333 4.34721 4.39384 4.40159 4.52711 4.65101 4.72023 4.81750 4.89863 4.96279 5.02179 5.07002 5.11874 5.13546 5.20820 5.28682 5.31266 5.39308 5.48597 5.58280 5.62256 5.72744 6.20205 6.33931 6.46772 6.74100 6.89099 7.34180 8.88547 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033341 B = 0.009093 C = 0.008343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.602495 B = 3078.677522 C = 3355.437432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.074 3.926 3 H 0.037 0.963 4 C -0.010 4.010 5 C -0.504 4.504 6 H 0.040 0.960 7 C 0.010 3.990 8 N -0.946 5.946 9 Si 0.940 3.060 10 H -0.270 1.270 11 H -0.251 1.251 12 H -0.289 1.289 13 N -0.508 5.508 14 C 0.022 3.978 15 C -0.127 4.127 16 C -0.118 4.118 17 C 0.093 3.907 18 C -0.108 4.108 19 C 0.060 3.940 20 O -0.577 6.577 21 H 0.071 0.929 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.020 0.980 25 H 0.022 0.978 26 H 0.264 0.736 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.027 0.973 38 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.513 1.992 -10.068 13.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.035 4.035 3 H 0.055 0.945 4 C -0.048 4.048 5 C -0.541 4.541 6 H 0.058 0.942 7 C -0.187 4.187 8 N -0.587 5.587 9 Si 0.764 3.236 10 H -0.195 1.195 11 H -0.175 1.175 12 H -0.215 1.215 13 N -0.234 5.234 14 C -0.105 4.105 15 C -0.166 4.166 16 C -0.157 4.157 17 C 0.004 3.996 18 C -0.166 4.166 19 C -0.018 4.018 20 O -0.384 6.384 21 H 0.089 0.911 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.039 0.961 25 H 0.040 0.960 26 H 0.073 0.927 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.045 0.955 38 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -9.574 0.978 -10.326 14.115 hybrid contribution 0.817 0.728 1.458 1.824 sum -8.757 1.706 -8.867 12.579 Atomic orbital electron populations 1.22034 0.93487 1.02323 1.01759 1.21833 0.95659 0.95903 0.90072 0.94497 1.19707 0.94589 0.96460 0.94036 1.21235 0.98141 1.21672 1.13097 0.94199 1.25805 0.95155 0.98520 0.99235 1.70056 1.10125 1.46375 1.32100 0.85825 0.78896 0.79322 0.79527 1.19494 1.17507 1.21505 1.63873 1.21156 1.35693 1.02664 1.23549 0.88695 1.00982 0.97282 1.22715 0.99440 0.98125 0.96274 1.22713 0.94737 0.97055 1.01152 1.21758 0.95826 0.89984 0.92054 1.21553 0.97965 1.00122 0.96926 1.23045 1.00344 0.91322 0.87104 1.86377 1.93958 1.25485 1.32536 0.91060 0.92306 0.91853 0.96149 0.95992 0.92736 0.90312 0.93001 0.91604 0.90398 0.93259 0.89679 0.92662 0.91616 0.92801 0.90625 0.95532 0.75799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.25 8.73 71.98 0.63 -3.62 16 2 C 0.07 2.84 1.87 44.92 0.08 2.93 16 3 H 0.04 1.51 5.07 -2.39 -0.01 1.50 16 4 C -0.01 -0.47 3.20 29.85 0.10 -0.38 16 5 C -0.50 -27.57 7.03 25.60 0.18 -27.39 16 6 H 0.04 2.43 6.59 -2.91 -0.02 2.41 16 7 C 0.01 0.56 5.47 84.65 0.46 1.03 16 8 N -0.95 -57.81 13.96 21.45 0.30 -57.51 16 9 Si 0.94 44.07 27.50 68.60 1.89 45.96 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.25 -11.18 6.52 99.48 0.65 -10.53 16 12 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 13 N -0.51 -18.95 4.64 -811.65 -3.76 -22.71 16 14 C 0.02 0.92 5.13 86.77 0.45 1.36 16 15 C -0.13 -4.35 7.08 31.98 0.23 -4.12 16 16 C -0.12 -3.78 5.85 31.78 0.19 -3.59 16 17 C 0.09 2.98 0.80 3.88 0.00 2.98 16 18 C -0.11 -2.97 8.52 71.98 0.61 -2.36 16 19 C 0.06 1.77 4.39 71.98 0.32 2.08 16 20 O -0.58 -14.46 12.60 -148.98 -1.88 -16.33 16 21 H 0.07 1.90 5.37 -2.39 -0.01 1.89 16 22 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 23 H 0.06 1.79 8.12 -2.39 -0.02 1.77 16 24 H 0.02 0.97 6.73 -2.38 -0.02 0.95 16 25 H 0.02 0.98 7.39 -2.39 -0.02 0.96 16 26 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 27 H 0.08 3.96 3.82 -2.39 -0.01 3.95 16 28 H 0.05 2.29 7.95 -2.39 -0.02 2.27 16 29 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.05 1.69 7.77 -2.38 -0.02 1.67 16 32 H 0.08 2.38 7.84 -2.39 -0.02 2.36 16 33 H 0.05 1.47 7.94 -2.39 -0.02 1.45 16 34 H 0.06 1.69 7.54 -2.39 -0.02 1.67 16 35 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 2.10 4.15 -2.39 -0.01 2.09 16 37 H 0.03 0.89 6.74 -2.39 -0.02 0.88 16 38 H 0.39 6.27 9.12 -74.06 -0.68 5.59 16 Total: -1.00 -62.91 280.53 0.10 -62.81 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.31 Total: 18.86 kcal Atomic # 6 Polarization: -34.32 SS G_CDS: 3.24 Total: -31.08 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -3.46 Total: -80.22 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -1.88 Total: -16.33 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.89 Total: 45.96 kcal Total: -62.91 0.10 -62.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723039178.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.170 kcal (2) G-P(sol) polarization free energy of solvation -62.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds