Wall clock time and date at job start Mon Mar 30 2020 04:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42898 * 113.99752 * 2 1 4 4 H 1.09000 * 112.91081 * 18.74910 * 3 2 1 5 5 C 1.53785 * 113.61312 * 247.49821 * 3 2 1 6 6 C 1.53784 * 87.08041 * 270.88268 * 5 3 2 7 7 C 1.53780 * 113.61555 * 150.00073 * 3 2 1 8 8 H 1.08996 * 113.69239 * 203.67685 * 7 3 2 9 9 N 1.46904 * 113.61410 * 334.56559 * 7 3 2 10 10 C 1.46896 * 110.99663 * 300.95627 * 9 7 3 11 11 C 1.46894 * 110.99915 * 177.00433 * 9 7 3 12 12 H 1.09002 * 109.47104 * 309.99793 * 11 9 7 13 13 C 1.52997 * 109.47515 * 70.00061 * 11 9 7 14 14 C 1.52999 * 109.46927 * 190.00421 * 11 9 7 15 15 C 1.50695 * 109.47581 * 64.99671 * 14 11 9 16 16 H 1.08002 * 119.99958 * 359.97438 * 15 14 11 17 17 C 1.37879 * 120.00273 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99634 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00158 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47031 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46648 * 120.00199 * 19 17 15 22 22 H 1.48500 * 109.47111 * 240.00198 * 19 17 15 23 23 H 1.08999 * 109.47043 * 60.00173 * 1 2 3 24 24 H 1.08999 * 109.46434 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47016 * 299.99864 * 1 2 3 26 26 H 1.09007 * 113.61220 * 156.33587 * 5 3 2 27 27 H 1.08997 * 113.61583 * 25.43295 * 5 3 2 28 28 H 1.09002 * 113.61408 * 220.02011 * 6 5 3 29 29 H 1.08994 * 113.61192 * 89.11167 * 6 5 3 30 30 H 1.08998 * 109.47503 * 296.04235 * 10 9 7 31 31 H 1.09007 * 109.47634 * 56.04710 * 10 9 7 32 32 H 1.09003 * 109.46925 * 176.04443 * 10 9 7 33 33 H 1.09002 * 109.47153 * 59.99762 * 13 11 9 34 34 H 1.09001 * 109.46832 * 299.99953 * 13 11 9 35 35 H 1.09004 * 109.47261 * 179.97438 * 13 11 9 36 36 H 1.08998 * 109.47565 * 185.00149 * 14 11 9 37 37 H 1.09000 * 109.46738 * 304.99630 * 14 11 9 38 38 H 0.97001 * 119.99767 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3143 2.0798 0.3227 5 6 2.7535 1.6489 -1.3018 6 6 4.0062 1.0331 -0.6565 7 6 3.3756 1.3720 0.7045 8 1 3.6323 2.3665 1.0692 9 7 3.5663 0.3260 1.7182 10 6 2.5341 0.4083 2.7601 11 6 4.9118 0.3989 2.3031 12 1 5.6529 0.4439 1.5051 13 6 5.0225 1.6524 3.1733 14 6 5.1622 -0.8421 3.1623 15 6 5.1750 -2.0668 2.2843 16 1 5.0195 -1.9699 1.2199 17 6 5.3840 -3.3113 2.8398 18 7 5.5718 -3.4295 4.1362 19 14 5.3991 -4.8295 1.7515 20 1 5.1651 -4.4295 0.3407 21 1 6.7171 -5.5046 1.8621 22 1 4.3277 -5.7611 2.1866 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.8389 2.7198 -1.4863 27 1 2.3927 1.0964 -2.1693 28 1 4.9215 1.5876 -0.8638 29 1 4.1085 -0.0371 -0.8360 30 1 2.6321 1.3531 3.2948 31 1 1.5476 0.3520 2.2997 32 1 2.6566 -0.4191 3.4591 33 1 4.2813 1.6074 3.9713 34 1 4.8440 2.5365 2.5611 35 1 6.0208 1.7062 3.6077 36 1 6.1237 -0.7468 3.6668 37 1 4.3699 -0.9357 3.9049 38 1 5.7185 -4.3050 4.5271 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724157878.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:23 Heat of formation + Delta-G solvation = -15.711827 kcal Electronic energy + Delta-G solvation = -16971.866240 eV Core-core repulsion = 14429.615717 eV Total energy + Delta-G solvation = -2542.250523 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.64190 -36.83050 -35.04063 -32.52245 -30.07546 -27.26280 -26.66236 -26.00381 -24.39341 -23.64314 -22.36648 -19.35742 -18.47249 -16.42185 -16.10422 -15.73042 -15.29181 -14.67743 -14.29403 -13.84717 -13.58730 -13.33058 -12.83629 -12.51491 -12.09346 -11.87064 -11.61057 -11.41696 -11.27448 -11.04310 -10.96172 -10.60967 -10.46934 -10.34890 -10.29948 -9.96712 -9.66975 -9.30383 -8.96705 -8.84318 -8.16496 -7.27746 -5.79337 -3.75693 3.45122 3.52114 3.59465 3.89115 4.65410 4.73885 4.84798 4.92125 5.16511 5.22242 5.47922 5.49490 5.58298 5.59992 5.69196 5.80539 5.84944 5.93693 6.00057 6.06405 6.16546 6.17837 6.27138 6.50458 6.56241 6.73223 6.74859 6.85026 7.11541 7.47543 7.65270 7.84357 8.07281 8.17867 8.24014 8.69984 9.30836 9.85455 11.32950 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023940 B = 0.008950 C = 0.007784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.318686 B = 3127.608532 C = 3596.351701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.337 6.337 3 C 0.075 3.925 4 H 0.061 0.939 5 C -0.164 4.164 6 C -0.117 4.117 7 C 0.051 3.949 8 H 0.063 0.937 9 N -0.487 5.487 10 C 0.030 3.970 11 C 0.084 3.916 12 H 0.068 0.932 13 C -0.185 4.185 14 C 0.030 3.970 15 C -0.482 4.482 16 H 0.062 0.938 17 C 0.048 3.952 18 N -0.907 5.907 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.289 1.289 22 H -0.288 1.288 23 H 0.033 0.967 24 H 0.085 0.915 25 H 0.037 0.963 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.010 0.990 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.037 0.963 35 H 0.054 0.946 36 H 0.016 0.984 37 H 0.018 0.982 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.860 11.442 -7.399 15.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.254 6.254 3 C 0.016 3.984 4 H 0.079 0.921 5 C -0.202 4.202 6 C -0.154 4.154 7 C -0.059 4.059 8 H 0.080 0.920 9 N -0.210 5.210 10 C -0.118 4.118 11 C -0.024 4.024 12 H 0.086 0.914 13 C -0.244 4.244 14 C -0.007 4.007 15 C -0.520 4.520 16 H 0.080 0.920 17 C -0.151 4.151 18 N -0.548 5.548 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.216 1.216 22 H -0.214 1.214 23 H 0.052 0.948 24 H 0.103 0.897 25 H 0.055 0.945 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.116 0.884 30 H 0.028 0.972 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.037 0.963 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.769 10.671 -7.509 15.186 hybrid contribution -0.137 0.161 -0.030 0.214 sum -7.907 10.832 -7.539 15.384 Atomic orbital electron populations 1.22782 0.82307 1.02580 0.99068 1.88140 1.18086 1.25056 1.94151 1.23124 0.93873 0.85376 0.96023 0.92127 1.23335 0.98536 1.00430 0.97868 1.22860 0.95759 1.02422 0.94397 1.23457 0.94811 0.94258 0.93354 0.91987 1.62277 1.02582 1.43127 1.13008 1.22324 0.94967 0.99624 0.94878 1.21923 0.89192 0.95029 0.96214 0.91400 1.22526 1.01841 0.99219 1.00769 1.19184 0.96503 0.90611 0.94374 1.21228 1.45452 0.90842 0.94511 0.92015 1.25003 0.96281 0.98953 0.94820 1.69983 1.51334 1.23221 1.10295 0.86582 0.77045 0.83464 0.81186 1.19716 1.21583 1.21435 0.94812 0.89688 0.94484 0.90095 0.90875 0.92288 0.88423 0.97200 0.92659 0.90453 0.92804 0.94432 0.92660 0.96566 0.96331 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.64 101.05 1.07 1.44 16 2 O -0.34 -5.56 9.04 -35.23 -0.32 -5.88 16 3 C 0.08 1.08 3.42 -25.92 -0.09 0.99 16 4 H 0.06 0.76 7.87 -51.93 -0.41 0.35 16 5 C -0.16 -2.09 7.91 -25.91 -0.21 -2.29 16 6 C -0.12 -1.81 7.45 -25.92 -0.19 -2.00 16 7 C 0.05 0.82 2.94 -66.90 -0.20 0.63 16 8 H 0.06 0.95 6.59 -51.93 -0.34 0.60 16 9 N -0.49 -9.69 4.03 -225.94 -0.91 -10.60 16 10 C 0.03 0.57 8.48 60.06 0.51 1.08 16 11 C 0.08 1.78 2.22 -67.72 -0.15 1.63 16 12 H 0.07 1.47 7.79 -51.93 -0.40 1.07 16 13 C -0.18 -3.29 8.47 37.16 0.31 -2.98 16 14 C 0.03 0.79 4.36 -27.89 -0.12 0.67 16 15 C -0.48 -13.92 8.84 -34.44 -0.30 -14.22 16 16 H 0.06 1.80 7.74 -52.49 -0.41 1.40 16 17 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 18 N -0.91 -28.00 13.29 55.43 0.74 -27.26 16 19 Si 0.89 22.78 29.54 -169.99 -5.02 17.76 16 20 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.04 0.41 8.08 -51.93 -0.42 -0.01 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 30 H 0.01 0.17 6.21 -51.93 -0.32 -0.16 16 31 H 0.05 0.96 6.06 -51.93 -0.31 0.64 16 32 H 0.08 1.66 6.37 -51.93 -0.33 1.33 16 33 H 0.05 0.96 6.33 -51.93 -0.33 0.63 16 34 H 0.04 0.59 6.63 -51.93 -0.34 0.24 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.51 6.34 -51.93 -0.33 0.19 16 38 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 296.85 15.07 4.47 4.47 Total: -1.00 -31.47 296.85 -6.97 -38.44 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -6.47 Total: -3.20 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: 0.54 Total: -13.73 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -0.17 Total: -37.86 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.32 Total: -5.88 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.47 -6.97 -38.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724157878.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.727 kcal (2) G-P(sol) polarization free energy of solvation -31.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds