Wall clock time and date at job start Mon Mar 30 2020 04:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42898 * 113.99752 * 2 1 4 4 H 1.09000 * 112.91081 * 18.74910 * 3 2 1 5 5 C 1.53785 * 113.61312 * 247.49821 * 3 2 1 6 6 C 1.53784 * 87.08041 * 270.88268 * 5 3 2 7 7 C 1.53780 * 113.61555 * 150.00073 * 3 2 1 8 8 H 1.08996 * 113.69239 * 203.67685 * 7 3 2 9 9 N 1.46904 * 113.61410 * 334.56559 * 7 3 2 10 10 C 1.46896 * 110.99663 * 300.95627 * 9 7 3 11 11 C 1.46894 * 110.99915 * 177.00433 * 9 7 3 12 12 H 1.09002 * 109.47104 * 309.99793 * 11 9 7 13 13 C 1.52997 * 109.47515 * 70.00061 * 11 9 7 14 14 C 1.52999 * 109.46927 * 190.00421 * 11 9 7 15 15 C 1.50695 * 109.47581 * 64.99671 * 14 11 9 16 16 H 1.08002 * 119.99958 * 359.97438 * 15 14 11 17 17 C 1.37879 * 120.00273 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99634 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00158 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47031 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46648 * 120.00199 * 19 17 15 22 22 H 1.48500 * 109.47111 * 240.00198 * 19 17 15 23 23 H 1.08999 * 109.47043 * 60.00173 * 1 2 3 24 24 H 1.08999 * 109.46434 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47016 * 299.99864 * 1 2 3 26 26 H 1.09007 * 113.61220 * 156.33587 * 5 3 2 27 27 H 1.08997 * 113.61583 * 25.43295 * 5 3 2 28 28 H 1.09002 * 113.61408 * 220.02011 * 6 5 3 29 29 H 1.08994 * 113.61192 * 89.11167 * 6 5 3 30 30 H 1.08998 * 109.47503 * 296.04235 * 10 9 7 31 31 H 1.09007 * 109.47634 * 56.04710 * 10 9 7 32 32 H 1.09003 * 109.46925 * 176.04443 * 10 9 7 33 33 H 1.09002 * 109.47153 * 59.99762 * 13 11 9 34 34 H 1.09001 * 109.46832 * 299.99953 * 13 11 9 35 35 H 1.09004 * 109.47261 * 179.97438 * 13 11 9 36 36 H 1.08998 * 109.47565 * 185.00149 * 14 11 9 37 37 H 1.09000 * 109.46738 * 304.99630 * 14 11 9 38 38 H 0.97001 * 119.99767 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3143 2.0798 0.3227 5 6 2.7535 1.6489 -1.3018 6 6 4.0062 1.0331 -0.6565 7 6 3.3756 1.3720 0.7045 8 1 3.6323 2.3665 1.0692 9 7 3.5663 0.3260 1.7182 10 6 2.5341 0.4083 2.7601 11 6 4.9118 0.3989 2.3031 12 1 5.6529 0.4439 1.5051 13 6 5.0225 1.6524 3.1733 14 6 5.1622 -0.8421 3.1623 15 6 5.1750 -2.0668 2.2843 16 1 5.0195 -1.9699 1.2199 17 6 5.3840 -3.3113 2.8398 18 7 5.5718 -3.4295 4.1362 19 14 5.3991 -4.8295 1.7515 20 1 5.1651 -4.4295 0.3407 21 1 6.7171 -5.5046 1.8621 22 1 4.3277 -5.7611 2.1866 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.8389 2.7198 -1.4863 27 1 2.3927 1.0964 -2.1693 28 1 4.9215 1.5876 -0.8638 29 1 4.1085 -0.0371 -0.8360 30 1 2.6321 1.3531 3.2948 31 1 1.5476 0.3520 2.2997 32 1 2.6566 -0.4191 3.4591 33 1 4.2813 1.6074 3.9713 34 1 4.8440 2.5365 2.5611 35 1 6.0208 1.7062 3.6077 36 1 6.1237 -0.7468 3.6668 37 1 4.3699 -0.9357 3.9049 38 1 5.7185 -4.3050 4.5271 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724157878.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:22 Heat of formation + Delta-G solvation = -36.520642 kcal Electronic energy + Delta-G solvation = -16972.768577 eV Core-core repulsion = 14429.615717 eV Total energy + Delta-G solvation = -2543.152861 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.87055 -38.26745 -36.29874 -34.68409 -31.78881 -29.19372 -27.67402 -27.34506 -25.65402 -25.27701 -24.06642 -20.75997 -19.90544 -18.34480 -17.64068 -17.04684 -16.66664 -16.30162 -15.81843 -15.20888 -14.97472 -14.64287 -14.21854 -14.06357 -13.88354 -13.53626 -13.15119 -12.87553 -12.68277 -12.52054 -12.47841 -12.38596 -12.29261 -11.87655 -11.77367 -11.49667 -11.05761 -11.01945 -10.86853 -10.46040 -10.26045 -8.75202 -8.08224 -6.11728 1.39883 1.41035 1.55110 2.48652 2.84143 3.22378 3.38123 3.76194 3.78101 4.01538 4.15831 4.29941 4.40473 4.43639 4.51745 4.58311 4.61912 4.63879 4.72577 4.78006 4.89767 4.98428 5.02141 5.11776 5.18595 5.24595 5.27500 5.39491 5.50555 5.53026 5.75667 5.92736 6.37339 6.42062 6.57855 6.73518 7.02009 7.53442 9.04105 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023940 B = 0.008950 C = 0.007784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.318686 B = 3127.608532 C = 3596.351701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.377 6.377 3 C 0.074 3.926 4 H 0.087 0.913 5 C -0.144 4.144 6 C -0.124 4.124 7 C 0.042 3.958 8 H 0.083 0.917 9 N -0.512 5.512 10 C 0.040 3.960 11 C 0.094 3.906 12 H 0.059 0.941 13 C -0.174 4.174 14 C 0.036 3.964 15 C -0.491 4.491 16 H 0.053 0.947 17 C -0.007 4.007 18 N -0.941 5.941 19 Si 0.955 3.045 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.283 1.283 23 H 0.055 0.945 24 H 0.083 0.917 25 H 0.047 0.953 26 H 0.113 0.887 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.029 0.971 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.055 0.945 36 H -0.010 1.010 37 H -0.005 1.005 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.838 12.998 -8.915 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.295 6.295 3 C 0.015 3.985 4 H 0.105 0.895 5 C -0.181 4.181 6 C -0.162 4.162 7 C -0.066 4.066 8 H 0.100 0.900 9 N -0.236 5.236 10 C -0.108 4.108 11 C -0.015 4.015 12 H 0.077 0.923 13 C -0.233 4.233 14 C -0.001 4.001 15 C -0.530 4.530 16 H 0.071 0.929 17 C -0.202 4.202 18 N -0.584 5.584 19 Si 0.781 3.219 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.209 1.209 23 H 0.074 0.926 24 H 0.102 0.898 25 H 0.065 0.935 26 H 0.132 0.868 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.008 0.992 37 H 0.013 0.987 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.755 12.239 -9.036 17.553 hybrid contribution 0.154 -0.320 0.444 0.568 sum -8.601 11.918 -8.593 17.026 Atomic orbital electron populations 1.22931 0.80437 1.03105 1.00597 1.88085 1.20338 1.26673 1.94399 1.23229 0.93485 0.85330 0.96413 0.89490 1.23289 0.95767 1.02077 0.97007 1.22815 0.97865 1.00550 0.95019 1.23683 0.96886 0.93892 0.92181 0.89995 1.62119 1.01734 1.45914 1.13800 1.22182 0.95408 0.98969 0.94281 1.21581 0.90257 0.94053 0.95571 0.92251 1.22380 1.01915 0.98498 1.00483 1.19041 0.94150 0.92681 0.94196 1.21487 1.44927 0.92183 0.94370 0.92854 1.25834 0.96049 1.02181 0.96160 1.70102 1.52294 1.24061 1.11932 0.85540 0.77369 0.79602 0.79370 1.19274 1.20618 1.20935 0.92624 0.89838 0.93475 0.86829 0.90778 0.91117 0.92204 0.95236 0.91267 0.94308 0.92928 0.91418 0.92620 0.99202 0.98655 0.93358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.64 113.37 1.21 1.78 16 2 O -0.38 -11.84 9.04 -148.98 -1.35 -13.19 16 3 C 0.07 1.92 3.42 31.12 0.11 2.02 16 4 H 0.09 1.78 7.87 -2.39 -0.02 1.77 16 5 C -0.14 -3.19 7.91 31.12 0.25 -2.94 16 6 C -0.12 -3.68 7.45 31.12 0.23 -3.44 16 7 C 0.04 1.28 2.94 45.44 0.13 1.41 16 8 H 0.08 2.17 6.59 -2.39 -0.02 2.15 16 9 N -0.51 -20.17 4.03 -868.73 -3.50 -23.67 16 10 C 0.04 1.47 8.48 127.69 1.08 2.55 16 11 C 0.09 3.98 2.22 44.92 0.10 4.08 16 12 H 0.06 2.59 7.79 -2.39 -0.02 2.57 16 13 C -0.17 -5.96 8.47 71.98 0.61 -5.35 16 14 C 0.04 1.98 4.36 29.85 0.13 2.11 16 15 C -0.49 -29.22 8.84 25.60 0.23 -28.99 16 16 H 0.05 3.20 7.74 -2.91 -0.02 3.18 16 17 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 18 N -0.94 -59.55 13.29 21.45 0.28 -59.26 16 19 Si 0.95 47.56 29.54 68.60 2.03 49.58 16 20 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 21 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 22 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 23 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.05 0.94 8.08 -2.39 -0.02 0.92 16 26 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 28 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.03 0.96 6.21 -2.39 -0.01 0.95 16 31 H 0.07 2.33 6.06 -2.38 -0.01 2.32 16 32 H 0.04 1.71 6.37 -2.39 -0.02 1.69 16 33 H 0.05 1.80 6.33 -2.39 -0.02 1.79 16 34 H 0.07 1.91 6.63 -2.39 -0.02 1.90 16 35 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 36 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 37 H 0.00 -0.28 6.34 -2.39 -0.02 -0.30 16 38 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -69.46 296.85 3.01 -66.45 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 1.01 Total: 6.81 kcal Atomic # 6 Polarization: -31.26 SS G_CDS: 4.53 Total: -26.72 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -3.22 Total: -82.94 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -1.35 Total: -13.19 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.58 kcal Total: -69.46 3.01 -66.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724157878.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.933 kcal (2) G-P(sol) polarization free energy of solvation -69.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds