Wall clock time and date at job start Mon Mar 30 2020 03:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.48424 * 2 1 4 4 C 1.53094 * 109.47868 * 239.97877 * 2 1 3 5 5 C 1.53187 * 109.16327 * 182.40824 * 4 2 1 6 6 H 1.09000 * 109.54090 * 297.02311 * 5 4 2 7 7 C 1.52994 * 109.53940 * 176.84962 * 5 4 2 8 8 N 1.46899 * 109.46884 * 175.00024 * 7 5 4 9 9 C 1.46906 * 111.00346 * 179.97438 * 8 7 5 10 10 C 1.50698 * 109.47358 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99819 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00046 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00192 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47261 * 60.00310 * 14 12 10 17 17 H 1.48500 * 109.47454 * 300.00304 * 14 12 10 18 18 C 1.53178 * 109.03330 * 56.98189 * 5 4 2 19 19 C 1.53085 * 109.16377 * 303.01816 * 18 5 4 20 20 H 1.09001 * 109.49055 * 297.61927 * 19 18 5 21 21 C 1.52999 * 109.48171 * 177.59559 * 19 18 5 22 22 O 1.42899 * 109.48405 * 120.04062 * 2 1 3 23 23 H 1.09000 * 109.47245 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46693 * 300.02166 * 1 2 3 25 25 H 1.08996 * 109.46994 * 60.01771 * 1 2 3 26 26 H 1.09000 * 109.52159 * 62.50730 * 4 2 1 27 27 H 1.09000 * 109.57387 * 302.34599 * 4 2 1 28 28 H 1.08996 * 109.47710 * 55.00098 * 7 5 4 29 29 H 1.08999 * 109.47499 * 294.99949 * 7 5 4 30 30 H 1.00899 * 111.00470 * 303.95185 * 8 7 5 31 31 H 1.09001 * 109.46887 * 60.00315 * 9 8 7 32 32 H 1.08993 * 109.46896 * 299.99985 * 9 8 7 33 33 H 0.97001 * 119.99934 * 359.97438 * 13 12 10 34 34 H 1.08997 * 109.52206 * 62.92641 * 18 5 4 35 35 H 1.08997 * 109.51854 * 183.11378 * 18 5 4 36 36 H 1.09002 * 109.47177 * 300.05801 * 21 19 18 37 37 H 1.09000 * 109.47242 * 60.05521 * 21 19 18 38 38 H 1.09002 * 109.47391 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7221 -1.2497 5 6 3.5711 -0.7708 -1.2123 6 1 3.9690 0.2436 -1.2425 7 6 4.0876 -1.5591 -2.4175 8 7 5.5552 -1.5037 -2.4464 9 6 6.0880 -2.2522 -3.5927 10 6 7.5929 -2.1723 -3.5893 11 1 8.1026 -1.6210 -2.8129 12 6 8.3190 -2.8039 -4.5766 13 7 7.6983 -3.4756 -5.5217 14 14 10.1843 -2.7054 -4.5720 15 1 10.7229 -3.4620 -5.7309 16 1 10.7078 -3.2909 -3.3116 17 1 10.6054 -1.2848 -4.6701 18 6 4.0176 -1.4602 0.0806 19 6 3.4308 -0.7096 1.2788 20 1 3.8193 0.3086 1.2960 21 6 3.8228 -1.4270 2.5721 22 8 2.0066 -0.6744 1.1662 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5142 0.8899 25 1 -0.3633 0.5135 -0.8901 26 1 1.7148 -0.1840 -2.1399 27 1 1.6442 -1.7373 -1.2723 28 1 3.6895 -1.1239 -3.3341 29 1 3.7647 -2.5972 -2.3382 30 1 5.8810 -0.5488 -2.4548 31 1 5.7038 -1.8221 -4.5176 32 1 5.7790 -3.2950 -3.5210 33 1 6.7297 -3.5270 -5.5239 34 1 3.6613 -2.4903 0.0859 35 1 5.1058 -1.4499 0.1418 36 1 3.4345 -2.4454 2.5547 37 1 4.9091 -1.4538 2.6579 38 1 3.4045 -0.8927 3.4252 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724461798.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:25 Heat of formation + Delta-G solvation = -79.366098 kcal Electronic energy + Delta-G solvation = -16103.278482 eV Core-core repulsion = 13558.267703 eV Total energy + Delta-G solvation = -2545.010779 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.67170 -36.08768 -33.75344 -33.63876 -31.95187 -29.77625 -26.72963 -26.30341 -24.12746 -21.97022 -21.67465 -20.86311 -20.04171 -16.85595 -16.50720 -15.60616 -15.21022 -14.83586 -14.20449 -13.98530 -13.72419 -13.44912 -12.87578 -12.74534 -12.45135 -12.16949 -12.03643 -11.80713 -11.73589 -11.48923 -11.38481 -10.91003 -10.81345 -10.64583 -10.52368 -10.32789 -10.13971 -10.05619 -9.29265 -8.62447 -8.41811 -7.41267 -6.38508 -4.07449 3.44063 3.46713 3.65270 3.68449 4.50998 4.63157 4.76935 4.92675 5.00050 5.11644 5.21484 5.31836 5.36010 5.38857 5.48383 5.54725 5.58693 5.69358 5.77082 5.88265 5.94664 5.98009 6.02152 6.08019 6.10540 6.21608 6.31158 6.49572 6.59693 6.93995 7.14601 7.33582 7.76930 8.14321 8.45068 8.56572 8.86127 9.64603 11.01301 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042990 B = 0.004982 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.159496 B = 5619.198949 C = 6097.043622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.089 3.911 3 H 0.053 0.947 4 C -0.144 4.144 5 C -0.085 4.085 6 H 0.065 0.935 7 C 0.064 3.936 8 N -0.681 5.681 9 C 0.184 3.816 10 C -0.595 4.595 11 H 0.056 0.944 12 C 0.014 3.986 13 N -0.914 5.914 14 Si 1.074 2.926 15 H -0.283 1.283 16 H -0.287 1.287 17 H -0.288 1.288 18 C -0.133 4.133 19 C 0.085 3.915 20 H 0.053 0.947 21 C -0.143 4.143 22 O -0.382 6.382 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.017 0.983 29 H 0.063 0.937 30 H 0.329 0.671 31 H -0.025 1.025 32 H 0.017 0.983 33 H 0.267 0.733 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.757 7.123 11.902 18.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.032 3.968 3 H 0.071 0.929 4 C -0.183 4.183 5 C -0.104 4.104 6 H 0.084 0.916 7 C -0.066 4.066 8 N -0.311 5.311 9 C 0.056 3.944 10 C -0.634 4.634 11 H 0.074 0.926 12 C -0.190 4.190 13 N -0.550 5.550 14 Si 0.902 3.098 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.215 1.215 18 C -0.170 4.170 19 C 0.028 3.972 20 H 0.071 0.929 21 C -0.200 4.200 22 O -0.302 6.302 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.035 0.965 29 H 0.081 0.919 30 H 0.146 0.854 31 H -0.008 1.008 32 H 0.035 0.965 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.438 6.009 11.649 16.756 hybrid contribution -1.484 1.172 -0.227 1.904 sum -11.922 7.181 11.422 18.005 Atomic orbital electron populations 1.21759 0.93426 1.02817 1.02080 1.22007 0.94615 0.94855 0.85365 0.92856 1.22267 0.96206 1.01841 0.97959 1.21205 0.93956 0.99471 0.95795 0.91632 1.21926 0.90546 0.99424 0.94679 1.60547 1.05169 1.18124 1.47281 1.19650 0.95873 0.93082 0.85753 1.22001 0.90980 1.36721 1.13686 0.92606 1.25880 1.07186 0.93334 0.92568 1.70794 1.11154 1.39568 1.33487 0.83473 0.73998 0.76225 0.76108 1.20810 1.21343 1.21483 1.22143 1.02400 0.99599 0.92881 1.22149 0.80831 0.98497 0.95750 0.92909 1.21746 1.01472 1.00971 0.95791 1.87871 1.21391 1.78081 1.42869 0.91867 0.92104 0.91267 0.91271 0.91048 0.96523 0.91866 0.85446 1.00784 0.96457 0.92324 0.91471 0.89440 0.91922 0.90934 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.56 37.16 0.36 -1.02 16 2 C 0.09 1.04 3.26 -26.68 -0.09 0.96 16 3 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.14 -1.81 4.71 -26.59 -0.13 -1.93 16 5 C -0.09 -1.24 2.42 -90.43 -0.22 -1.46 16 6 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 7 C 0.06 1.16 5.08 -3.83 -0.02 1.14 16 8 N -0.68 -14.78 6.03 -115.06 -0.69 -15.48 16 9 C 0.18 4.88 4.75 -4.97 -0.02 4.86 16 10 C -0.60 -17.27 9.32 -34.44 -0.32 -17.60 16 11 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 12 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 13 N -0.91 -28.33 13.65 55.43 0.76 -27.58 16 14 Si 1.07 25.54 29.90 -169.99 -5.08 20.46 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 18 C -0.13 -1.92 4.56 -26.59 -0.12 -2.04 16 19 C 0.09 1.09 3.26 -26.69 -0.09 1.00 16 20 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 21 C -0.14 -1.58 9.56 37.16 0.36 -1.23 16 22 O -0.38 -5.16 10.05 -35.23 -0.35 -5.51 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.33 6.88 8.72 -39.29 -0.34 6.54 16 31 H -0.03 -0.71 8.01 -51.93 -0.42 -1.12 16 32 H 0.02 0.49 8.01 -51.93 -0.42 0.08 16 33 H 0.27 8.26 7.22 -40.82 -0.29 7.97 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.09 1.38 7.87 -51.93 -0.41 0.97 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 304.53 15.07 4.59 4.59 Total: -1.00 -31.03 304.53 -8.18 -39.20 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.00 Total: 1.33 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -0.39 Total: -17.01 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.06 Total: -43.05 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.35 Total: -5.51 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.08 Total: 20.46 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.03 -8.18 -39.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724461798.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.162 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds