Wall clock time and date at job start Mon Mar 30 2020 03:02:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08999 * 109.48424 * 2 1
4 4 C 1.53094 * 109.47868 * 239.97877 * 2 1 3
5 5 C 1.53187 * 109.16327 * 182.40824 * 4 2 1
6 6 H 1.09000 * 109.54090 * 297.02311 * 5 4 2
7 7 C 1.52994 * 109.53940 * 176.84962 * 5 4 2
8 8 N 1.46899 * 109.46884 * 175.00024 * 7 5 4
9 9 C 1.46906 * 111.00346 * 179.97438 * 8 7 5
10 10 C 1.50698 * 109.47358 * 179.97438 * 9 8 7
11 11 H 1.08005 * 119.99819 * 0.02562 * 10 9 8
12 12 C 1.37875 * 120.00046 * 179.97438 * 10 9 8
13 13 N 1.31511 * 120.00192 * 0.02562 * 12 10 9
14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 9
15 15 H 1.48506 * 109.47297 * 180.02562 * 14 12 10
16 16 H 1.48503 * 109.47261 * 60.00310 * 14 12 10
17 17 H 1.48500 * 109.47454 * 300.00304 * 14 12 10
18 18 C 1.53178 * 109.03330 * 56.98189 * 5 4 2
19 19 C 1.53085 * 109.16377 * 303.01816 * 18 5 4
20 20 H 1.09001 * 109.49055 * 297.61927 * 19 18 5
21 21 C 1.52999 * 109.48171 * 177.59559 * 19 18 5
22 22 O 1.42899 * 109.48405 * 120.04062 * 2 1 3
23 23 H 1.09000 * 109.47245 * 180.02562 * 1 2 3
24 24 H 1.09007 * 109.46693 * 300.02166 * 1 2 3
25 25 H 1.08996 * 109.46994 * 60.01771 * 1 2 3
26 26 H 1.09000 * 109.52159 * 62.50730 * 4 2 1
27 27 H 1.09000 * 109.57387 * 302.34599 * 4 2 1
28 28 H 1.08996 * 109.47710 * 55.00098 * 7 5 4
29 29 H 1.08999 * 109.47499 * 294.99949 * 7 5 4
30 30 H 1.00899 * 111.00470 * 303.95185 * 8 7 5
31 31 H 1.09001 * 109.46887 * 60.00315 * 9 8 7
32 32 H 1.08993 * 109.46896 * 299.99985 * 9 8 7
33 33 H 0.97001 * 119.99934 * 359.97438 * 13 12 10
34 34 H 1.08997 * 109.52206 * 62.92641 * 18 5 4
35 35 H 1.08997 * 109.51854 * 183.11378 * 18 5 4
36 36 H 1.09002 * 109.47177 * 300.05801 * 21 19 18
37 37 H 1.09000 * 109.47242 * 60.05521 * 21 19 18
38 38 H 1.09002 * 109.47391 * 180.02562 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8935 1.0276 0.0000
4 6 2.0405 -0.7221 -1.2497
5 6 3.5711 -0.7708 -1.2123
6 1 3.9690 0.2436 -1.2425
7 6 4.0876 -1.5591 -2.4175
8 7 5.5552 -1.5037 -2.4464
9 6 6.0880 -2.2522 -3.5927
10 6 7.5929 -2.1723 -3.5893
11 1 8.1026 -1.6210 -2.8129
12 6 8.3190 -2.8039 -4.5766
13 7 7.6983 -3.4756 -5.5217
14 14 10.1843 -2.7054 -4.5720
15 1 10.7229 -3.4620 -5.7309
16 1 10.7078 -3.2909 -3.3116
17 1 10.6054 -1.2848 -4.6701
18 6 4.0176 -1.4602 0.0806
19 6 3.4308 -0.7096 1.2788
20 1 3.8193 0.3086 1.2960
21 6 3.8228 -1.4270 2.5721
22 8 2.0066 -0.6744 1.1662
23 1 -0.3634 -1.0277 0.0005
24 1 -0.3633 0.5142 0.8899
25 1 -0.3633 0.5135 -0.8901
26 1 1.7148 -0.1840 -2.1399
27 1 1.6442 -1.7373 -1.2723
28 1 3.6895 -1.1239 -3.3341
29 1 3.7647 -2.5972 -2.3382
30 1 5.8810 -0.5488 -2.4548
31 1 5.7038 -1.8221 -4.5176
32 1 5.7790 -3.2950 -3.5210
33 1 6.7297 -3.5270 -5.5239
34 1 3.6613 -2.4903 0.0859
35 1 5.1058 -1.4499 0.1418
36 1 3.4345 -2.4454 2.5547
37 1 4.9091 -1.4538 2.6579
38 1 3.4045 -0.8927 3.4252
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000724461798.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:02:25
Heat of formation + Delta-G solvation = -79.366098 kcal
Electronic energy + Delta-G solvation = -16103.278482 eV
Core-core repulsion = 13558.267703 eV
Total energy + Delta-G solvation = -2545.010779 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-39.67170 -36.08768 -33.75344 -33.63876 -31.95187 -29.77625 -26.72963 -26.30341
-24.12746 -21.97022 -21.67465 -20.86311 -20.04171 -16.85595 -16.50720 -15.60616
-15.21022 -14.83586 -14.20449 -13.98530 -13.72419 -13.44912 -12.87578 -12.74534
-12.45135 -12.16949 -12.03643 -11.80713 -11.73589 -11.48923 -11.38481 -10.91003
-10.81345 -10.64583 -10.52368 -10.32789 -10.13971 -10.05619 -9.29265 -8.62447
-8.41811 -7.41267 -6.38508 -4.07449 3.44063 3.46713 3.65270 3.68449
4.50998 4.63157 4.76935 4.92675 5.00050 5.11644 5.21484 5.31836
5.36010 5.38857 5.48383 5.54725 5.58693 5.69358 5.77082 5.88265
5.94664 5.98009 6.02152 6.08019 6.10540 6.21608 6.31158 6.49572
6.59693 6.93995 7.14601 7.33582 7.76930 8.14321 8.45068 8.56572
8.86127 9.64603 11.01301
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.042990 B = 0.004982 C = 0.004591
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 651.159496 B = 5619.198949 C = 6097.043622
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.089 3.911
3 H 0.053 0.947
4 C -0.144 4.144
5 C -0.085 4.085
6 H 0.065 0.935
7 C 0.064 3.936
8 N -0.681 5.681
9 C 0.184 3.816
10 C -0.595 4.595
11 H 0.056 0.944
12 C 0.014 3.986
13 N -0.914 5.914
14 Si 1.074 2.926
15 H -0.283 1.283
16 H -0.287 1.287
17 H -0.288 1.288
18 C -0.133 4.133
19 C 0.085 3.915
20 H 0.053 0.947
21 C -0.143 4.143
22 O -0.382 6.382
23 H 0.062 0.938
24 H 0.060 0.940
25 H 0.068 0.932
26 H 0.069 0.931
27 H 0.071 0.929
28 H 0.017 0.983
29 H 0.063 0.937
30 H 0.329 0.671
31 H -0.025 1.025
32 H 0.017 0.983
33 H 0.267 0.733
34 H 0.067 0.933
35 H 0.087 0.913
36 H 0.062 0.938
37 H 0.072 0.928
38 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.757 7.123 11.902 18.183
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C 0.032 3.968
3 H 0.071 0.929
4 C -0.183 4.183
5 C -0.104 4.104
6 H 0.084 0.916
7 C -0.066 4.066
8 N -0.311 5.311
9 C 0.056 3.944
10 C -0.634 4.634
11 H 0.074 0.926
12 C -0.190 4.190
13 N -0.550 5.550
14 Si 0.902 3.098
15 H -0.208 1.208
16 H -0.213 1.213
17 H -0.215 1.215
18 C -0.170 4.170
19 C 0.028 3.972
20 H 0.071 0.929
21 C -0.200 4.200
22 O -0.302 6.302
23 H 0.081 0.919
24 H 0.079 0.921
25 H 0.087 0.913
26 H 0.087 0.913
27 H 0.090 0.910
28 H 0.035 0.965
29 H 0.081 0.919
30 H 0.146 0.854
31 H -0.008 1.008
32 H 0.035 0.965
33 H 0.077 0.923
34 H 0.085 0.915
35 H 0.106 0.894
36 H 0.081 0.919
37 H 0.091 0.909
38 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -10.438 6.009 11.649 16.756
hybrid contribution -1.484 1.172 -0.227 1.904
sum -11.922 7.181 11.422 18.005
Atomic orbital electron populations
1.21759 0.93426 1.02817 1.02080 1.22007 0.94615 0.94855 0.85365
0.92856 1.22267 0.96206 1.01841 0.97959 1.21205 0.93956 0.99471
0.95795 0.91632 1.21926 0.90546 0.99424 0.94679 1.60547 1.05169
1.18124 1.47281 1.19650 0.95873 0.93082 0.85753 1.22001 0.90980
1.36721 1.13686 0.92606 1.25880 1.07186 0.93334 0.92568 1.70794
1.11154 1.39568 1.33487 0.83473 0.73998 0.76225 0.76108 1.20810
1.21343 1.21483 1.22143 1.02400 0.99599 0.92881 1.22149 0.80831
0.98497 0.95750 0.92909 1.21746 1.01472 1.00971 0.95791 1.87871
1.21391 1.78081 1.42869 0.91867 0.92104 0.91267 0.91271 0.91048
0.96523 0.91866 0.85446 1.00784 0.96457 0.92324 0.91471 0.89440
0.91922 0.90934 0.92351
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.37 9.56 37.16 0.36 -1.02 16
2 C 0.09 1.04 3.26 -26.68 -0.09 0.96 16
3 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16
4 C -0.14 -1.81 4.71 -26.59 -0.13 -1.93 16
5 C -0.09 -1.24 2.42 -90.43 -0.22 -1.46 16
6 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16
7 C 0.06 1.16 5.08 -3.83 -0.02 1.14 16
8 N -0.68 -14.78 6.03 -115.06 -0.69 -15.48 16
9 C 0.18 4.88 4.75 -4.97 -0.02 4.86 16
10 C -0.60 -17.27 9.32 -34.44 -0.32 -17.60 16
11 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16
12 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16
13 N -0.91 -28.33 13.65 55.43 0.76 -27.58 16
14 Si 1.07 25.54 29.90 -169.99 -5.08 20.46 16
15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
16 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16
17 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16
18 C -0.13 -1.92 4.56 -26.59 -0.12 -2.04 16
19 C 0.09 1.09 3.26 -26.69 -0.09 1.00 16
20 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16
21 C -0.14 -1.58 9.56 37.16 0.36 -1.23 16
22 O -0.38 -5.16 10.05 -35.23 -0.35 -5.51 16
23 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16
24 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16
25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
28 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16
29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16
30 H 0.33 6.88 8.72 -39.29 -0.34 6.54 16
31 H -0.03 -0.71 8.01 -51.93 -0.42 -1.12 16
32 H 0.02 0.49 8.01 -51.93 -0.42 0.08 16
33 H 0.27 8.26 7.22 -40.82 -0.29 7.97 16
34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16
35 H 0.09 1.38 7.87 -51.93 -0.41 0.97 16
36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
LS Contribution 304.53 15.07 4.59 4.59
Total: -1.00 -31.03 304.53 -8.18 -39.20
By element:
Atomic # 1 Polarization: 8.33 SS G_CDS: -7.00 Total: 1.33 kcal
Atomic # 6 Polarization: -16.62 SS G_CDS: -0.39 Total: -17.01 kcal
Atomic # 7 Polarization: -43.12 SS G_CDS: 0.06 Total: -43.05 kcal
Atomic # 8 Polarization: -5.16 SS G_CDS: -0.35 Total: -5.51 kcal
Atomic # 14 Polarization: 25.54 SS G_CDS: -5.08 Total: 20.46 kcal
Total LS contribution 4.59 Total: 4.59 kcal
Total: -31.03 -8.18 -39.20 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000724461798.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.162 kcal
(2) G-P(sol) polarization free energy of solvation -31.027 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.189 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.366 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds