Wall clock time and date at job start Mon Mar 30 2020 03:02:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08999 * 109.48424 * 2 1
4 4 C 1.53094 * 109.47868 * 239.97877 * 2 1 3
5 5 C 1.53187 * 109.16327 * 182.40824 * 4 2 1
6 6 H 1.09000 * 109.54090 * 297.02311 * 5 4 2
7 7 C 1.52994 * 109.53940 * 176.84962 * 5 4 2
8 8 N 1.46899 * 109.46884 * 175.00024 * 7 5 4
9 9 C 1.46906 * 111.00346 * 179.97438 * 8 7 5
10 10 C 1.50698 * 109.47358 * 179.97438 * 9 8 7
11 11 H 1.08005 * 119.99819 * 0.02562 * 10 9 8
12 12 C 1.37875 * 120.00046 * 179.97438 * 10 9 8
13 13 N 1.31511 * 120.00192 * 0.02562 * 12 10 9
14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 9
15 15 H 1.48506 * 109.47297 * 180.02562 * 14 12 10
16 16 H 1.48503 * 109.47261 * 60.00310 * 14 12 10
17 17 H 1.48500 * 109.47454 * 300.00304 * 14 12 10
18 18 C 1.53178 * 109.03330 * 56.98189 * 5 4 2
19 19 C 1.53085 * 109.16377 * 303.01816 * 18 5 4
20 20 H 1.09001 * 109.49055 * 297.61927 * 19 18 5
21 21 C 1.52999 * 109.48171 * 177.59559 * 19 18 5
22 22 O 1.42899 * 109.48405 * 120.04062 * 2 1 3
23 23 H 1.09000 * 109.47245 * 180.02562 * 1 2 3
24 24 H 1.09007 * 109.46693 * 300.02166 * 1 2 3
25 25 H 1.08996 * 109.46994 * 60.01771 * 1 2 3
26 26 H 1.09000 * 109.52159 * 62.50730 * 4 2 1
27 27 H 1.09000 * 109.57387 * 302.34599 * 4 2 1
28 28 H 1.08996 * 109.47710 * 55.00098 * 7 5 4
29 29 H 1.08999 * 109.47499 * 294.99949 * 7 5 4
30 30 H 1.00899 * 111.00470 * 303.95185 * 8 7 5
31 31 H 1.09001 * 109.46887 * 60.00315 * 9 8 7
32 32 H 1.08993 * 109.46896 * 299.99985 * 9 8 7
33 33 H 0.97001 * 119.99934 * 359.97438 * 13 12 10
34 34 H 1.08997 * 109.52206 * 62.92641 * 18 5 4
35 35 H 1.08997 * 109.51854 * 183.11378 * 18 5 4
36 36 H 1.09002 * 109.47177 * 300.05801 * 21 19 18
37 37 H 1.09000 * 109.47242 * 60.05521 * 21 19 18
38 38 H 1.09002 * 109.47391 * 180.02562 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8935 1.0276 0.0000
4 6 2.0405 -0.7221 -1.2497
5 6 3.5711 -0.7708 -1.2123
6 1 3.9690 0.2436 -1.2425
7 6 4.0876 -1.5591 -2.4175
8 7 5.5552 -1.5037 -2.4464
9 6 6.0880 -2.2522 -3.5927
10 6 7.5929 -2.1723 -3.5893
11 1 8.1026 -1.6210 -2.8129
12 6 8.3190 -2.8039 -4.5766
13 7 7.6983 -3.4756 -5.5217
14 14 10.1843 -2.7054 -4.5720
15 1 10.7229 -3.4620 -5.7309
16 1 10.7078 -3.2909 -3.3116
17 1 10.6054 -1.2848 -4.6701
18 6 4.0176 -1.4602 0.0806
19 6 3.4308 -0.7096 1.2788
20 1 3.8193 0.3086 1.2960
21 6 3.8228 -1.4270 2.5721
22 8 2.0066 -0.6744 1.1662
23 1 -0.3634 -1.0277 0.0005
24 1 -0.3633 0.5142 0.8899
25 1 -0.3633 0.5135 -0.8901
26 1 1.7148 -0.1840 -2.1399
27 1 1.6442 -1.7373 -1.2723
28 1 3.6895 -1.1239 -3.3341
29 1 3.7647 -2.5972 -2.3382
30 1 5.8810 -0.5488 -2.4548
31 1 5.7038 -1.8221 -4.5176
32 1 5.7790 -3.2950 -3.5210
33 1 6.7297 -3.5270 -5.5239
34 1 3.6613 -2.4903 0.0859
35 1 5.1058 -1.4499 0.1418
36 1 3.4345 -2.4454 2.5547
37 1 4.9091 -1.4538 2.6579
38 1 3.4045 -0.8927 3.4252
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000724461798.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:02:23
Heat of formation + Delta-G solvation = -99.712859 kcal
Electronic energy + Delta-G solvation = -16104.160783 eV
Core-core repulsion = 13558.267703 eV
Total energy + Delta-G solvation = -2545.893081 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-40.73455 -37.70999 -35.51749 -34.61802 -33.71109 -30.81536 -28.53647 -27.31787
-25.85987 -23.88454 -22.72637 -22.08884 -21.21400 -19.02176 -17.49304 -16.79481
-16.47816 -16.33581 -15.76999 -15.48681 -15.32622 -14.84406 -14.42925 -13.74565
-13.61814 -13.39397 -13.29715 -13.20708 -12.90136 -12.81194 -12.71857 -12.61704
-12.47354 -11.92250 -11.86138 -11.82616 -11.51183 -11.19708 -10.82513 -10.63746
-10.31137 -9.27456 -8.73782 -6.45006 1.53391 1.62221 1.81952 2.55006
2.75796 3.11202 3.31587 3.61284 3.86549 3.90661 3.96104 4.20756
4.25176 4.29934 4.44926 4.54807 4.56379 4.67146 4.69530 4.72037
4.74469 4.83674 4.93477 4.97434 5.02848 5.08324 5.09472 5.23918
5.28264 5.35533 5.40984 5.68565 5.97647 6.34220 6.36674 6.51096
6.63816 7.37853 8.65932
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.042990 B = 0.004982 C = 0.004591
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 651.159496 B = 5619.198949 C = 6097.043622
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.085 3.915
3 H 0.063 0.937
4 C -0.140 4.140
5 C -0.078 4.078
6 H 0.073 0.927
7 C 0.067 3.933
8 N -0.678 5.678
9 C 0.194 3.806
10 C -0.612 4.612
11 H 0.058 0.942
12 C -0.038 4.038
13 N -0.937 5.937
14 Si 1.125 2.875
15 H -0.283 1.283
16 H -0.269 1.269
17 H -0.266 1.266
18 C -0.129 4.129
19 C 0.087 3.913
20 H 0.062 0.938
21 C -0.141 4.141
22 O -0.394 6.394
23 H 0.057 0.943
24 H 0.067 0.933
25 H 0.087 0.913
26 H 0.083 0.917
27 H 0.063 0.937
28 H 0.018 0.982
29 H 0.051 0.949
30 H 0.336 0.664
31 H -0.045 1.045
32 H -0.007 1.007
33 H 0.252 0.748
34 H 0.052 0.948
35 H 0.072 0.928
36 H 0.056 0.944
37 H 0.079 0.921
38 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.674 8.467 12.995 19.412
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C 0.028 3.972
3 H 0.081 0.919
4 C -0.178 4.178
5 C -0.097 4.097
6 H 0.092 0.908
7 C -0.063 4.063
8 N -0.308 5.308
9 C 0.066 3.934
10 C -0.649 4.649
11 H 0.076 0.924
12 C -0.235 4.235
13 N -0.574 5.574
14 Si 0.945 3.055
15 H -0.209 1.209
16 H -0.195 1.195
17 H -0.191 1.191
18 C -0.167 4.167
19 C 0.030 3.970
20 H 0.080 0.920
21 C -0.198 4.198
22 O -0.315 6.315
23 H 0.076 0.924
24 H 0.086 0.914
25 H 0.105 0.895
26 H 0.101 0.899
27 H 0.082 0.918
28 H 0.036 0.964
29 H 0.069 0.931
30 H 0.153 0.847
31 H -0.028 1.028
32 H 0.011 0.989
33 H 0.062 0.938
34 H 0.071 0.929
35 H 0.090 0.910
36 H 0.075 0.925
37 H 0.098 0.902
38 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -10.393 7.371 12.766 18.037
hybrid contribution -1.582 0.755 -0.561 1.841
sum -11.976 8.126 12.206 18.932
Atomic orbital electron populations
1.21766 0.91706 1.02914 1.03351 1.22178 0.95994 0.94889 0.84141
0.91870 1.22241 0.94254 1.01924 0.99361 1.21143 0.95565 0.99019
0.93952 0.90816 1.21984 0.88172 0.99541 0.96600 1.60426 1.07594
1.18143 1.44669 1.19361 0.95250 0.92226 0.86588 1.22371 0.92224
1.36598 1.13755 0.92370 1.27536 1.11894 0.92236 0.91824 1.70932
1.10391 1.41243 1.34818 0.82839 0.68328 0.77547 0.76758 1.20873
1.19459 1.19134 1.22082 1.01449 0.99189 0.93957 1.22161 0.80668
0.98781 0.95414 0.91987 1.21753 1.02037 1.00586 0.95435 1.87876
1.21522 1.78439 1.43612 0.92367 0.91402 0.89465 0.89887 0.91811
0.96385 0.93056 0.84677 1.02768 0.98937 0.93849 0.92894 0.90965
0.92524 0.90190 0.91110
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.33 9.56 71.98 0.69 -1.64 16
2 C 0.09 1.81 3.26 30.62 0.10 1.91 16
3 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16
4 C -0.14 -3.27 4.71 30.69 0.14 -3.13 16
5 C -0.08 -2.19 2.42 -10.67 -0.03 -2.22 16
6 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16
7 C 0.07 2.40 5.08 86.30 0.44 2.84 16
8 N -0.68 -29.64 6.03 -517.95 -3.12 -32.76 16
9 C 0.19 10.58 4.75 85.56 0.41 10.98 16
10 C -0.61 -35.68 9.32 25.60 0.24 -35.44 16
11 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16
12 C -0.04 -2.21 5.46 84.65 0.46 -1.74 16
13 N -0.94 -58.95 13.65 21.45 0.29 -58.65 16
14 Si 1.13 50.51 29.90 68.60 2.05 52.56 16
15 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16
16 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16
17 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16
18 C -0.13 -3.66 4.56 30.68 0.14 -3.52 16
19 C 0.09 2.09 3.26 30.62 0.10 2.19 16
20 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16
21 C -0.14 -2.92 9.56 71.98 0.69 -2.23 16
22 O -0.39 -9.92 10.05 -148.98 -1.50 -11.41 16
23 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16
24 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16
25 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16
26 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16
27 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16
28 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16
29 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16
30 H 0.34 13.92 8.72 -89.69 -0.78 13.14 16
31 H -0.05 -2.60 8.01 -2.39 -0.02 -2.62 16
32 H -0.01 -0.44 8.01 -2.39 -0.02 -0.46 16
33 H 0.25 16.17 7.22 -92.71 -0.67 15.50 16
34 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16
35 H 0.07 2.26 7.87 -2.39 -0.02 2.24 16
36 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16
37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16
38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16
Total: -1.00 -66.29 304.53 1.42 -64.87
By element:
Atomic # 1 Polarization: 17.09 SS G_CDS: 0.32 Total: 17.41 kcal
Atomic # 6 Polarization: -35.39 SS G_CDS: 3.38 Total: -32.01 kcal
Atomic # 7 Polarization: -88.58 SS G_CDS: -2.83 Total: -91.41 kcal
Atomic # 8 Polarization: -9.92 SS G_CDS: -1.50 Total: -11.41 kcal
Atomic # 14 Polarization: 50.51 SS G_CDS: 2.05 Total: 52.56 kcal
Total: -66.29 1.42 -64.87 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000724461798.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.845 kcal
(2) G-P(sol) polarization free energy of solvation -66.289 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.134 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.421 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.868 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.713 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds