Wall clock time and date at job start Mon Mar 30 2020 03:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.48424 * 2 1 4 4 C 1.53094 * 109.47868 * 239.97877 * 2 1 3 5 5 C 1.53187 * 109.16327 * 182.40824 * 4 2 1 6 6 H 1.09000 * 109.54090 * 297.02311 * 5 4 2 7 7 C 1.52994 * 109.53940 * 176.84962 * 5 4 2 8 8 N 1.46899 * 109.46884 * 175.00024 * 7 5 4 9 9 C 1.46906 * 111.00346 * 179.97438 * 8 7 5 10 10 C 1.50698 * 109.47358 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99819 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00046 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00192 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47261 * 60.00310 * 14 12 10 17 17 H 1.48500 * 109.47454 * 300.00304 * 14 12 10 18 18 C 1.53178 * 109.03330 * 56.98189 * 5 4 2 19 19 C 1.53085 * 109.16377 * 303.01816 * 18 5 4 20 20 H 1.09001 * 109.49055 * 297.61927 * 19 18 5 21 21 C 1.52999 * 109.48171 * 177.59559 * 19 18 5 22 22 O 1.42899 * 109.48405 * 120.04062 * 2 1 3 23 23 H 1.09000 * 109.47245 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46693 * 300.02166 * 1 2 3 25 25 H 1.08996 * 109.46994 * 60.01771 * 1 2 3 26 26 H 1.09000 * 109.52159 * 62.50730 * 4 2 1 27 27 H 1.09000 * 109.57387 * 302.34599 * 4 2 1 28 28 H 1.08996 * 109.47710 * 55.00098 * 7 5 4 29 29 H 1.08999 * 109.47499 * 294.99949 * 7 5 4 30 30 H 1.00899 * 111.00470 * 303.95185 * 8 7 5 31 31 H 1.09001 * 109.46887 * 60.00315 * 9 8 7 32 32 H 1.08993 * 109.46896 * 299.99985 * 9 8 7 33 33 H 0.97001 * 119.99934 * 359.97438 * 13 12 10 34 34 H 1.08997 * 109.52206 * 62.92641 * 18 5 4 35 35 H 1.08997 * 109.51854 * 183.11378 * 18 5 4 36 36 H 1.09002 * 109.47177 * 300.05801 * 21 19 18 37 37 H 1.09000 * 109.47242 * 60.05521 * 21 19 18 38 38 H 1.09002 * 109.47391 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7221 -1.2497 5 6 3.5711 -0.7708 -1.2123 6 1 3.9690 0.2436 -1.2425 7 6 4.0876 -1.5591 -2.4175 8 7 5.5552 -1.5037 -2.4464 9 6 6.0880 -2.2522 -3.5927 10 6 7.5929 -2.1723 -3.5893 11 1 8.1026 -1.6210 -2.8129 12 6 8.3190 -2.8039 -4.5766 13 7 7.6983 -3.4756 -5.5217 14 14 10.1843 -2.7054 -4.5720 15 1 10.7229 -3.4620 -5.7309 16 1 10.7078 -3.2909 -3.3116 17 1 10.6054 -1.2848 -4.6701 18 6 4.0176 -1.4602 0.0806 19 6 3.4308 -0.7096 1.2788 20 1 3.8193 0.3086 1.2960 21 6 3.8228 -1.4270 2.5721 22 8 2.0066 -0.6744 1.1662 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5142 0.8899 25 1 -0.3633 0.5135 -0.8901 26 1 1.7148 -0.1840 -2.1399 27 1 1.6442 -1.7373 -1.2723 28 1 3.6895 -1.1239 -3.3341 29 1 3.7647 -2.5972 -2.3382 30 1 5.8810 -0.5488 -2.4548 31 1 5.7038 -1.8221 -4.5176 32 1 5.7790 -3.2950 -3.5210 33 1 6.7297 -3.5270 -5.5239 34 1 3.6613 -2.4903 0.0859 35 1 5.1058 -1.4499 0.1418 36 1 3.4345 -2.4454 2.5547 37 1 4.9091 -1.4538 2.6579 38 1 3.4045 -0.8927 3.4252 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724461798.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:23 Heat of formation + Delta-G solvation = -99.712859 kcal Electronic energy + Delta-G solvation = -16104.160783 eV Core-core repulsion = 13558.267703 eV Total energy + Delta-G solvation = -2545.893081 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.73455 -37.70999 -35.51749 -34.61802 -33.71109 -30.81536 -28.53647 -27.31787 -25.85987 -23.88454 -22.72637 -22.08884 -21.21400 -19.02176 -17.49304 -16.79481 -16.47816 -16.33581 -15.76999 -15.48681 -15.32622 -14.84406 -14.42925 -13.74565 -13.61814 -13.39397 -13.29715 -13.20708 -12.90136 -12.81194 -12.71857 -12.61704 -12.47354 -11.92250 -11.86138 -11.82616 -11.51183 -11.19708 -10.82513 -10.63746 -10.31137 -9.27456 -8.73782 -6.45006 1.53391 1.62221 1.81952 2.55006 2.75796 3.11202 3.31587 3.61284 3.86549 3.90661 3.96104 4.20756 4.25176 4.29934 4.44926 4.54807 4.56379 4.67146 4.69530 4.72037 4.74469 4.83674 4.93477 4.97434 5.02848 5.08324 5.09472 5.23918 5.28264 5.35533 5.40984 5.68565 5.97647 6.34220 6.36674 6.51096 6.63816 7.37853 8.65932 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042990 B = 0.004982 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.159496 B = 5619.198949 C = 6097.043622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.085 3.915 3 H 0.063 0.937 4 C -0.140 4.140 5 C -0.078 4.078 6 H 0.073 0.927 7 C 0.067 3.933 8 N -0.678 5.678 9 C 0.194 3.806 10 C -0.612 4.612 11 H 0.058 0.942 12 C -0.038 4.038 13 N -0.937 5.937 14 Si 1.125 2.875 15 H -0.283 1.283 16 H -0.269 1.269 17 H -0.266 1.266 18 C -0.129 4.129 19 C 0.087 3.913 20 H 0.062 0.938 21 C -0.141 4.141 22 O -0.394 6.394 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.018 0.982 29 H 0.051 0.949 30 H 0.336 0.664 31 H -0.045 1.045 32 H -0.007 1.007 33 H 0.252 0.748 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.674 8.467 12.995 19.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.028 3.972 3 H 0.081 0.919 4 C -0.178 4.178 5 C -0.097 4.097 6 H 0.092 0.908 7 C -0.063 4.063 8 N -0.308 5.308 9 C 0.066 3.934 10 C -0.649 4.649 11 H 0.076 0.924 12 C -0.235 4.235 13 N -0.574 5.574 14 Si 0.945 3.055 15 H -0.209 1.209 16 H -0.195 1.195 17 H -0.191 1.191 18 C -0.167 4.167 19 C 0.030 3.970 20 H 0.080 0.920 21 C -0.198 4.198 22 O -0.315 6.315 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.036 0.964 29 H 0.069 0.931 30 H 0.153 0.847 31 H -0.028 1.028 32 H 0.011 0.989 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.393 7.371 12.766 18.037 hybrid contribution -1.582 0.755 -0.561 1.841 sum -11.976 8.126 12.206 18.932 Atomic orbital electron populations 1.21766 0.91706 1.02914 1.03351 1.22178 0.95994 0.94889 0.84141 0.91870 1.22241 0.94254 1.01924 0.99361 1.21143 0.95565 0.99019 0.93952 0.90816 1.21984 0.88172 0.99541 0.96600 1.60426 1.07594 1.18143 1.44669 1.19361 0.95250 0.92226 0.86588 1.22371 0.92224 1.36598 1.13755 0.92370 1.27536 1.11894 0.92236 0.91824 1.70932 1.10391 1.41243 1.34818 0.82839 0.68328 0.77547 0.76758 1.20873 1.19459 1.19134 1.22082 1.01449 0.99189 0.93957 1.22161 0.80668 0.98781 0.95414 0.91987 1.21753 1.02037 1.00586 0.95435 1.87876 1.21522 1.78439 1.43612 0.92367 0.91402 0.89465 0.89887 0.91811 0.96385 0.93056 0.84677 1.02768 0.98937 0.93849 0.92894 0.90965 0.92524 0.90190 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.56 71.98 0.69 -1.64 16 2 C 0.09 1.81 3.26 30.62 0.10 1.91 16 3 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 4 C -0.14 -3.27 4.71 30.69 0.14 -3.13 16 5 C -0.08 -2.19 2.42 -10.67 -0.03 -2.22 16 6 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 7 C 0.07 2.40 5.08 86.30 0.44 2.84 16 8 N -0.68 -29.64 6.03 -517.95 -3.12 -32.76 16 9 C 0.19 10.58 4.75 85.56 0.41 10.98 16 10 C -0.61 -35.68 9.32 25.60 0.24 -35.44 16 11 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 12 C -0.04 -2.21 5.46 84.65 0.46 -1.74 16 13 N -0.94 -58.95 13.65 21.45 0.29 -58.65 16 14 Si 1.13 50.51 29.90 68.60 2.05 52.56 16 15 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 16 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 17 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 18 C -0.13 -3.66 4.56 30.68 0.14 -3.52 16 19 C 0.09 2.09 3.26 30.62 0.10 2.19 16 20 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 21 C -0.14 -2.92 9.56 71.98 0.69 -2.23 16 22 O -0.39 -9.92 10.05 -148.98 -1.50 -11.41 16 23 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.34 13.92 8.72 -89.69 -0.78 13.14 16 31 H -0.05 -2.60 8.01 -2.39 -0.02 -2.62 16 32 H -0.01 -0.44 8.01 -2.39 -0.02 -0.46 16 33 H 0.25 16.17 7.22 -92.71 -0.67 15.50 16 34 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.07 2.26 7.87 -2.39 -0.02 2.24 16 36 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -66.29 304.53 1.42 -64.87 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.32 Total: 17.41 kcal Atomic # 6 Polarization: -35.39 SS G_CDS: 3.38 Total: -32.01 kcal Atomic # 7 Polarization: -88.58 SS G_CDS: -2.83 Total: -91.41 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -1.50 Total: -11.41 kcal Atomic # 14 Polarization: 50.51 SS G_CDS: 2.05 Total: 52.56 kcal Total: -66.29 1.42 -64.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724461798.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.845 kcal (2) G-P(sol) polarization free energy of solvation -66.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds