Wall clock time and date at job start Mon Mar 30 2020 03:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47533 * 2 1 4 4 C 1.50699 * 109.47139 * 240.00005 * 2 1 3 5 5 H 1.08000 * 120.00420 * 239.99958 * 4 2 1 6 6 C 1.37878 * 119.99719 * 60.00081 * 4 2 1 7 7 N 1.31517 * 120.00229 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99986 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47116 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46970 * 120.00250 * 8 6 4 11 11 H 1.48495 * 109.47039 * 240.00056 * 8 6 4 12 12 N 1.46897 * 109.46882 * 120.00285 * 2 1 3 13 13 C 1.46897 * 110.99894 * 273.32117 * 12 2 1 14 14 H 1.09002 * 109.54294 * 34.04476 * 13 12 2 15 15 C 1.53180 * 109.54277 * 154.21693 * 13 12 2 16 16 C 1.53102 * 109.16089 * 176.76061 * 15 13 12 17 17 H 1.09006 * 109.40138 * 62.50787 * 16 15 13 18 18 C 1.52992 * 109.49438 * 182.49172 * 16 15 13 19 19 O 1.42904 * 109.48952 * 302.53127 * 16 15 13 20 20 C 1.42902 * 114.09878 * 61.10521 * 19 16 15 21 21 H 1.09004 * 109.48140 * 58.82500 * 20 19 16 22 22 C 1.53000 * 109.47969 * 178.86257 * 20 19 16 23 23 C 1.53093 * 109.41460 * 298.84669 * 20 19 16 24 24 H 1.09001 * 109.47475 * 173.99993 * 1 2 3 25 25 H 1.09003 * 109.47058 * 293.99922 * 1 2 3 26 26 H 1.09005 * 109.47021 * 53.99929 * 1 2 3 27 27 H 0.97005 * 119.99810 * 179.97438 * 7 6 4 28 28 H 1.00894 * 111.00620 * 37.28505 * 12 2 1 29 29 H 1.09002 * 109.52679 * 296.76225 * 15 13 12 30 30 H 1.08999 * 109.52080 * 56.94457 * 15 13 12 31 31 H 1.09004 * 109.47631 * 180.02562 * 18 16 15 32 32 H 1.09003 * 109.47211 * 300.03720 * 18 16 15 33 33 H 1.09001 * 109.47445 * 60.04280 * 18 16 15 34 34 H 1.09001 * 109.46642 * 179.97438 * 22 20 19 35 35 H 1.09001 * 109.46870 * 299.94445 * 22 20 19 36 36 H 1.09001 * 109.46953 * 59.94329 * 22 20 19 37 37 H 1.09005 * 109.52438 * 297.70318 * 23 20 19 38 38 H 1.08998 * 109.52272 * 177.51725 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1473 -2.2862 -3.6039 10 1 1.1677 -1.5864 -4.8166 11 1 3.1472 -0.1856 -4.8161 12 7 2.0196 -0.6925 1.1994 13 6 2.1201 0.2317 2.3367 14 1 1.3223 0.9719 2.2767 15 6 1.9941 -0.5522 3.6467 16 6 2.1808 0.4063 4.8259 17 1 1.3889 1.1552 4.8126 18 6 2.1182 -0.3793 6.1372 19 8 3.4504 1.0533 4.7180 20 6 3.6058 1.8400 3.5351 21 1 2.8325 2.6076 3.5050 22 6 4.9843 2.5038 3.5413 23 6 3.4786 0.9387 2.3042 24 1 -0.3634 -1.0220 -0.1074 25 1 -0.3633 0.4180 0.9389 26 1 -0.3633 0.6041 -0.8314 27 1 0.7095 1.1620 -3.4844 28 1 1.4336 -1.4821 1.4257 29 1 1.0076 -1.0126 3.7024 30 1 2.7607 -1.3262 3.6832 31 1 2.2507 0.3035 6.9766 32 1 1.1497 -0.8726 6.2194 33 1 2.9099 -1.1284 6.1502 34 1 5.1027 3.1034 2.6388 35 1 5.0746 3.1454 4.4178 36 1 5.7572 1.7358 3.5719 37 1 4.2761 0.1957 2.3127 38 1 3.5528 1.5436 1.4005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724492495.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:22 Heat of formation + Delta-G solvation = -66.311671 kcal Electronic energy + Delta-G solvation = -16605.092950 eV Core-core repulsion = 14060.648254 eV Total energy + Delta-G solvation = -2544.444697 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.43953 -36.08428 -33.53161 -33.14925 -31.16226 -29.35961 -26.83997 -26.14539 -25.10011 -21.79557 -21.62721 -20.08060 -19.70320 -16.39729 -16.23204 -15.41787 -14.92498 -14.69802 -14.41656 -13.92257 -13.29472 -12.90496 -12.60557 -12.31565 -12.20223 -12.02511 -11.87005 -11.64699 -11.45904 -11.28426 -10.96095 -10.74361 -10.70313 -10.51535 -10.25769 -10.16120 -10.06799 -9.73124 -9.18916 -8.91418 -8.36149 -7.23174 -5.97779 -4.00166 3.32062 3.39776 3.45449 3.84812 4.44433 4.85434 4.95586 5.11458 5.25047 5.33853 5.34310 5.38946 5.57802 5.63681 5.66066 5.75006 5.85515 5.91844 6.04424 6.13083 6.16902 6.23199 6.28370 6.43447 6.59127 6.68741 6.80278 6.83641 7.10921 7.39636 7.50097 7.72739 7.91220 8.28784 8.56459 8.63853 9.07661 9.65203 11.09812 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037222 B = 0.006431 C = 0.005964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.063008 B = 4353.036785 C = 4693.613776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.211 3.789 3 H 0.033 0.967 4 C -0.493 4.493 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.679 5.679 13 C 0.087 3.913 14 H 0.034 0.966 15 C -0.150 4.150 16 C 0.090 3.910 17 H 0.052 0.948 18 C -0.142 4.142 19 O -0.381 6.381 20 C 0.086 3.914 21 H 0.052 0.948 22 C -0.141 4.141 23 C -0.132 4.132 24 H 0.030 0.970 25 H 0.003 0.997 26 H 0.085 0.915 27 H 0.258 0.742 28 H 0.325 0.675 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.190 0.961 13.310 13.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.103 3.897 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.212 1.212 12 N -0.309 5.309 13 C -0.023 4.023 14 H 0.052 0.948 15 C -0.188 4.188 16 C 0.032 3.968 17 H 0.070 0.930 18 C -0.199 4.199 19 O -0.301 6.301 20 C 0.029 3.971 21 H 0.070 0.930 22 C -0.198 4.198 23 C -0.171 4.171 24 H 0.049 0.951 25 H 0.022 0.978 26 H 0.103 0.897 27 H 0.068 0.932 28 H 0.142 0.858 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.928 1.113 13.115 13.484 hybrid contribution -1.020 -0.239 -1.000 1.448 sum 1.908 0.874 12.115 12.296 Atomic orbital electron populations 1.22420 1.00770 1.00187 0.99150 1.19214 0.89462 0.94366 0.86656 0.94928 1.21204 1.30040 1.12342 0.89578 0.91919 1.24960 0.95371 0.95218 0.99048 1.69912 1.37530 1.23255 1.23177 0.86465 0.78500 0.79679 0.82900 1.19745 1.21241 1.21158 1.60811 1.57000 1.09592 1.03454 1.21433 0.95936 0.94595 0.90369 0.94848 1.22431 1.02312 0.99213 0.94815 1.21994 0.85934 0.93813 0.95048 0.93002 1.21747 1.02213 1.00089 0.95877 1.87849 1.34970 1.65451 1.41863 1.22125 0.97583 0.92309 0.85127 0.93043 1.21733 0.95660 1.00449 1.01975 1.22203 0.98499 0.99141 0.97242 0.95095 0.97836 0.89672 0.93188 0.85761 0.91568 0.90493 0.92208 0.91335 0.91852 0.91060 0.92416 0.91870 0.90749 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.02 8.84 37.16 0.33 -3.69 16 2 C 0.21 5.31 2.38 -68.87 -0.16 5.14 16 3 H 0.03 0.90 7.23 -51.93 -0.38 0.53 16 4 C -0.49 -13.73 8.84 -34.44 -0.30 -14.03 16 5 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.87 11.39 55.43 0.63 -25.24 16 8 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 N -0.68 -14.50 6.05 -100.76 -0.61 -15.11 16 13 C 0.09 1.59 2.36 -67.53 -0.16 1.43 16 14 H 0.03 0.65 7.23 -51.93 -0.38 0.27 16 15 C -0.15 -2.24 4.69 -26.59 -0.12 -2.37 16 16 C 0.09 1.23 3.26 -26.68 -0.09 1.15 16 17 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 18 C -0.14 -1.55 9.56 37.15 0.36 -1.20 16 19 O -0.38 -5.81 10.05 -35.23 -0.35 -6.17 16 20 C 0.09 1.29 3.26 -26.68 -0.09 1.20 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 22 C -0.14 -1.78 9.56 37.16 0.36 -1.43 16 23 C -0.13 -2.32 4.91 -26.59 -0.13 -2.45 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.00 0.06 7.52 -51.93 -0.39 -0.33 16 26 H 0.08 2.27 6.26 -51.93 -0.32 1.95 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.33 6.61 8.08 -39.29 -0.32 6.29 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 38 H 0.07 1.42 7.58 -51.93 -0.39 1.03 16 LS Contribution 299.05 15.07 4.51 4.51 Total: -1.00 -28.83 299.05 -7.75 -36.59 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.80 Total: 3.61 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -0.11 Total: -14.82 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.02 Total: -40.35 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.35 Total: -6.17 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.83 -7.75 -36.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724492495.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.726 kcal (2) G-P(sol) polarization free energy of solvation -28.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds